Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014613

Physical Location & Seq

Genomic Coordinates Forward (+)

33677540 .. 33681922

Gene Structure 4383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCAACTGGAGCAGCCCTCAGAGCTTTCAGGAAACGAATCATTCCTTCCTTCACATCCCAAACCTTCGCTTCAACCTTCAATTCTCGATCCATTAGCACGCTGGTTTTAGCTGAACATGAAGGTAGCTCTCTCAAAATCCAATCCGTGAGCGCAGTAAAGGCGGCCAAGTCTCTAAGCAAGGACAACTCCATTTCGTTGCTGTTGGCTGGGTCCGGCCCTGGCCTCCATGAGGCCGCCGCACAAGCGGCTTCGTGCGACGCTTCAGTGTCTCAGGTGCTTGTGGCTGATTCTGATGAGTTTAGTCATCCTCTGGCAGAACCTTGGGCTAAACTGGTCCAGTTGGTGCAGCAGAAAGGGGGGTACTCACATGTGATCACAACTTCAGGATCATTTGGGAAGAACATAATGCCACGGGCAGCTGCTCTTTTGGATGTTTCTCCAATCACGGATGTGACTGGAATCTCCGAGCCTCATCTATTTGTCAGGCCAATATATGCTGGAAATGCACTTTGTACTGTTCGATACACTGGTGTTGGCCCTTGTCTGTTGACCATTAGAGCAACATCCTTTCCGGTTTCTCCCATCACATCTGATTCAAAATCTAATGAAGCTTCCATCTCCCAGGTTGATCTCTCCACCTTTGGTGAAGATTCTGTTGGCAAATCTCGATATGTTAAGCACACATCCCAGGATATAGAGCGCCCTGATCTTGGAAATGCCCGTGTTGTGATTACAGGTGGGCGTGCGCTAAAAAGTGCTGAAAACTTCAAAATGATAGAAAAGCTTGCAGAAAAACTTGGTGCAGCTGTTGGAGCTACCCGTGCTGCTGTTGATGCAGGATATGTTCCTAATGACCTGCAGGTTGGCCAAACTGGAAAGATAGTTGCCCCAGAGTTGTACATGGCCTTTGGTGTTTCAGGAGCCATTCAACACTTGGCAGGCATGCGAGATTCCAAGTACATTGTTGCTGTGAACAAAGATGCAGATGCACCCATATTTCAGGTTGCTGACTATGGACTTGTAGGTGATATTTTTGATGTGATACCAGAGTTGCTAGAGAAGCTTCCTGAGAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0019395 GO:0019752 GO:0022900 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF ETF_alpha

Protein Analysis

360

Amino Acids

37.93

Weight (kDa)

7.06

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	34 - 211	9.7e-35	Electron transfer flavoprotein domain
ETF_alpha	PF00766	237 - 317	1.9e-35	Electron transfer flavoprotein FAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50940
fragaria_vesca	FvH4_3g22000 FvH4_3g22000
malus_domestica	MD03G1209400.v1.1
prunus_persica	Prupe.4G205700_v2.0.a1
pyrus_communis	pycom03g15820
rosa_chinensis	RchiOBHm_Chr5g0037851
rosa_laevigata	RLG00000033817
rosa_multiflora	Rmu_sc0003735.1_g000010 Rmu_sc0005416.1_g000017
rosa_roxburghii	Rroxscaffold_1G00043070
rosa_rugosa	Rorug05G0168100
rosa_samantha	Rh5AG257000 Rh5BG259400 Rh5CG292400 Rh5DG269300
rosa_wichuraiana	Rw5G023830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	853, 867
AciI	CCGC	4 cut(s)	164, 237, 240, 248
AclWI	GGATC	2 cut(s)	84, 397
AcoI	YGGCCR	2 cut(s)	165, 868
AcuI	CTGAAG	2 cut(s)	249, 369
AfaI	GTAC	4 cut(s)	365, 517, 902, 962
AfiI	CCNNNNNNNGG	2 cut(s)	232, 713
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	5 cut(s)	75, 82, 600, 772, 932
AjnI	CCWGG	3 cut(s)	220, 624, 690
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	9 cut(s)	26, 113, 129, 422, 614, 787, 809, 818, 1066
AluI	AGCT	9 cut(s)	26, 113, 129, 422, 614, 787, 809, 818, 1066
Alw26I	GTCTC	2 cut(s)	177, 276
AlwI	GGATC	2 cut(s)	84, 397
AoxI	GGCC	8 cut(s)	165, 217, 223, 234, 488, 538, 868, 906
ApeKI	GCWGC	6 cut(s)	14, 349, 419, 422, 806, 827
AspLEI	GCGC	3 cut(s)	155, 705, 751
AspS9I	GGNCC	4 cut(s)	213, 218, 337, 539
AsuHPI	GGTGA	2 cut(s)	659, 1040
AvaII	GGWCC	2 cut(s)	213, 337
BaeI	ACNNNNGTAYC	4 cut(s)	517, 550, 1037, 1070
BalI	TGGCCA	1 cut(s)	870
BbvI	GCAGC	6 cut(s)	26, 361, 409, 431, 814, 818
BccI	CCATC	2 cut(s)	593, 626
BciT130I	CCWGG	3 cut(s)	222, 626, 692
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	177, 276
BfaI	CTAG	1 cut(s)	1058
BfmI	CTRYAG	1 cut(s)	860
BfoI	RGCGCY	1 cut(s)	706
BfuAI	ACCTGC	2 cut(s)	853, 867
Bme1390I	CCNGG	3 cut(s)	222, 626, 692
Bme18I	GGWCC	2 cut(s)	213, 337
BmgT120I	GGNCC	4 cut(s)	213, 218, 337, 539
BmiI	GGNNCC	2 cut(s)	214, 925
BmrFI	CCNGG	3 cut(s)	222, 626, 692
BmsI	GCATC	3 cut(s)	826, 973, 979
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	5 cut(s)	220, 323, 413, 624, 690
BsaWI	WCCGGW	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 713
Bse1I	ACTGG	6 cut(s)	13, 339, 340, 463, 535, 880
BseBI	CCWGG	3 cut(s)	222, 626, 692
BseDI	CCNNGG	5 cut(s)	220, 323, 413, 624, 690
BseGI	GGATG	6 cut(s)	56, 307, 439, 457, 566, 686
BseLI	CCNNNNNNNGG	2 cut(s)	232, 713
BseMII	CTCAG	3 cut(s)	34, 287, 1062
BseNI	ACTGG	6 cut(s)	13, 339, 340, 463, 535, 880
BseXI	GCAGC	6 cut(s)	26, 361, 409, 431, 814, 818
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	2 cut(s)	368, 825
BshFI	GGCC	8 cut(s)	167, 219, 225, 236, 490, 540, 870, 908
BsiSI	CCGG	2 cut(s)	216, 575
BslI	CCNNNNNNNGG	2 cut(s)	232, 713
BsmAI	GTCTC	2 cut(s)	177, 276
BsnI	GGCC	8 cut(s)	167, 219, 225, 236, 490, 540, 870, 908
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	5 cut(s)	89, 375, 389, 631, 709
BspACI	CCGC	4 cut(s)	164, 237, 240, 248
BspANI	GGCC	8 cut(s)	167, 219, 225, 236, 490, 540, 870, 908
BspCNI	CTCAG	3 cut(s)	33, 286, 1063
BspLI	GGNNCC	2 cut(s)	214, 925
BspMAI	CTGCAG	1 cut(s)	864
BspMI	ACCTGC	2 cut(s)	853, 867
BspPI	GGATC	2 cut(s)	84, 397
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	6 cut(s)	13, 339, 340, 463, 535, 880
BssECI	CCNNGG	5 cut(s)	220, 323, 413, 624, 690
BssMI	GATC	5 cut(s)	89, 375, 389, 631, 709
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	3 cut(s)	222, 626, 692
Bst4CI	ACNGT	1 cut(s)	520
BstAUI	TGTACA	1 cut(s)	900
BstC8I	GCNNGC	5 cut(s)	101, 747, 789, 943, 947
BstDEI	CTNAG	4 cut(s)	20, 176, 273, 1071
BstDSI	CCRYGG	1 cut(s)	413
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	6 cut(s)	56, 307, 439, 457, 566, 686
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	3 cut(s)	155, 705, 751
BstKTI	GATC	5 cut(s)	92, 378, 392, 634, 712
BstMAI	GTCTC	2 cut(s)	177, 276
BstMBI	GATC	5 cut(s)	89, 375, 389, 631, 709
BstNI	CCWGG	3 cut(s)	222, 626, 692
BstNSI	RCATGY	2 cut(s)	374, 949
BstSCI	CCNGG	3 cut(s)	220, 624, 690
BstSFI	CTRYAG	1 cut(s)	860
BstV1I	GCAGC	6 cut(s)	26, 361, 409, 431, 814, 818
BsuRI	GGCC	8 cut(s)	167, 219, 225, 236, 490, 540, 870, 908
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	6 cut(s)	56, 307, 439, 457, 566, 686
BtsIMutI	CAGTG	2 cut(s)	273, 528
BveI	ACCTGC	2 cut(s)	853, 867
Cac8I	GCNNGC	5 cut(s)	101, 747, 789, 943, 947
CfoI	GCGC	3 cut(s)	155, 705, 751
Cfr13I	GGNCC	4 cut(s)	213, 218, 337, 539
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	4 cut(s)	364, 516, 901, 961
CviAII	CATG	5 cut(s)	119, 230, 371, 904, 946
CviQI	GTAC	4 cut(s)	364, 516, 901, 961
DdeI	CTNAG	4 cut(s)	20, 176, 273, 1071
DpnI	GATC	5 cut(s)	91, 377, 391, 633, 711
DpnII	GATC	5 cut(s)	89, 375, 389, 631, 709
EaeI	YGGCCR	2 cut(s)	165, 868
Eco130I	CCWWGG	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	213, 337
Eco57I	CTGAAG	2 cut(s)	249, 369
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	220, 624, 690
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	5 cut(s)	122, 233, 374, 907, 949
FatI	CATG	5 cut(s)	118, 229, 370, 903, 945
FbaI	TGATCA	1 cut(s)	375
FokI	GGATG	6 cut(s)	43, 294, 446, 464, 553, 673
FspBI	CTAG	1 cut(s)	1058
GlaI	GCGC	3 cut(s)	154, 704, 750
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	8 cut(s)	167, 219, 225, 236, 490, 540, 870, 908
HapII	CCGG	2 cut(s)	216, 575
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	3 cut(s)	155, 705, 751
Hin1II	CATG	5 cut(s)	122, 233, 374, 907, 949
Hin6I	GCGC	3 cut(s)	153, 703, 749
HinP1I	GCGC	3 cut(s)	153, 703, 749
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	3 cut(s)	612, 785, 1064
HinfI	GANTC	6 cut(s)	39, 290, 462, 596, 653, 953
HpaII	CCGG	2 cut(s)	216, 575
HphI	GGTGA	2 cut(s)	659, 1040
Hpy166II	GTNNAC	2 cut(s)	552, 976
Hpy188I	TCNGA	4 cut(s)	23, 295, 469, 595
Hpy188III	TCNNGA	6 cut(s)	31, 87, 387, 669, 921, 1070
Hpy8I	GTNNAC	2 cut(s)	552, 976
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	5 cut(s)	57, 61, 76, 88, 116
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	8 cut(s)	349, 509, 791, 806, 839, 862, 986, 992
HpyF3I	CTNAG	4 cut(s)	20, 176, 273, 1071
Hsp92II	CATG	5 cut(s)	122, 233, 374, 907, 949
HspAI	GCGC	3 cut(s)	153, 703, 749
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	5 cut(s)	89, 375, 389, 631, 709
LmnI	GCTCC	3 cut(s)	11, 815, 923
Lsp1109I	GCAGC	6 cut(s)	26, 361, 409, 431, 814, 818
LweI	GCATC	3 cut(s)	826, 973, 979
MaeI	CTAG	1 cut(s)	1058
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	5 cut(s)	91, 377, 391, 633, 711
MboI	GATC	5 cut(s)	89, 375, 389, 631, 709
MboII	GAAGA	2 cut(s)	412, 662
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	1 cut(s)	82
MluNI	TGGCCA	1 cut(s)	870
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	5 cut(s)	29, 226, 236, 321, 483
Mox20I	TGGCCA	1 cut(s)	870
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	870
MspA1I	CMGCKG	2 cut(s)	422, 809
MspI	CCGG	2 cut(s)	216, 575
MspR9I	CCNGG	3 cut(s)	222, 626, 692
MvaI	CCWGG	3 cut(s)	222, 626, 692
NdeII	GATC	5 cut(s)	89, 375, 389, 631, 709
NlaIII	CATG	5 cut(s)	122, 233, 374, 907, 949
NlaIV	GGNNCC	2 cut(s)	214, 925
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	2 cut(s)	374, 949
OliI	CACNNNNGTG	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	949
PciI	ACATGT	1 cut(s)	370
PfeI	GAWTC	6 cut(s)	39, 290, 462, 596, 653, 953
PscI	ACATGT	1 cut(s)	370
Psp6I	CCWGG	3 cut(s)	220, 624, 690
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	220, 624, 690
PspN4I	GGNNCC	2 cut(s)	214, 925
PspPI	GGNCC	4 cut(s)	213, 218, 337, 539
PstI	CTGCAG	1 cut(s)	864
PvuII	CAGCTG	2 cut(s)	422, 809
RsaI	GTAC	4 cut(s)	365, 517, 902, 962
RsaNI	GTAC	4 cut(s)	364, 516, 901, 961
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	678
Sau3AI	GATC	5 cut(s)	89, 375, 389, 631, 709
Sau96I	GGNCC	4 cut(s)	213, 218, 337, 539
SbfI	CCTGCAGG	1 cut(s)	864
ScrFI	CCNGG	3 cut(s)	222, 626, 692
SdaI	CCTGCAGG	1 cut(s)	864
SfaNI	GCATC	3 cut(s)	826, 973, 979
SfcI	CTRYAG	1 cut(s)	860
SinI	GGWCC	2 cut(s)	213, 337
SmiMI	CAYNNNNRTG	1 cut(s)	452
SphI	GCATGC	1 cut(s)	949
Sse8387I	CCTGCAGG	1 cut(s)	864
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	4 cut(s)	164, 237, 240, 248
SspMI	CTAG	1 cut(s)	1058
StyD4I	CCNGG	3 cut(s)	220, 624, 690
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	88, 523, 670
TasI	AATT	1 cut(s)	82
TatI	WGTACW	3 cut(s)	515, 900, 960
TauI	GCSGC	4 cut(s)	167, 239, 242, 251
TfiI	GAWTC	6 cut(s)	39, 290, 462, 596, 653, 953
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	2 cut(s)	273, 535
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	6 cut(s)	14, 349, 419, 422, 806, 827
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	135, 624
TspGWI	ACGGA	2 cut(s)	136, 464
TspRI	CASTG	2 cut(s)	273, 535
VpaK11BI	GGWCC	2 cut(s)	213, 337
XagI	CCTNNNNNAGG	1 cut(s)	230
XceI	RCATGY	2 cut(s)	374, 949
XcmI	CCANNNNNNNNNTGG	2 cut(s)	100, 934
XspI	CTAG	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.