Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014613

Physical Location & Seq

Genomic Coordinates Reverse (-)

17069765 .. 17073506

Gene Structure 3742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGGATCTGAAGACCCAAAATGCGCCACGTTTATTAGGACGTTTGGAGCTCAGCCGTTTCGATCGTTTGCCTATGTCATTCTTCCTCCATCGTCATCGTCCCCAAAAGCTACACACACAGAGAGGGAGAGAGCTTCAGAAATGGCAGCTTTCAGAGCCTTCAGGAAACGAATCGTTCCTTCCTTCAAGTCACGAATTTTCGCTTCATCCTTCAATTCAAGATCCATTAGCACATTGGTTTTAGCCGAACATGAAGGTGGTGCTATCAAACCCCAATCAGTCAGCGCAGTGAAGGCTGCAAGTTCTTTGAGCGACGAAAACTCGATTTCGTTGTTATTAGCAGGCTCCGGCCCTGCCCTCCATGAAGCGGCTGCGAATGCCGCTTCGTGTGACCCGTCAGTTTCTCAGGTGCTTGTGGCTGATTCTGAGAAATTTAGTCATCATCTAGCAGAACCTTGGGCTAGACTGATCCATTTGGTTCAGCAGAAAGGCGGGTACTCACATGTAATCACTGCTTCGGGTTCATTTGGGAAGAACATACTGCCACGGGCTGCTGCGCTTTTAGATGTTTCTCCAATCACGGATGTGATTGAAATTTCTGATTCTCATCTATTTGTCAGGCCAATATATGCCGGAAATGCCCTTTGTACTGTTCGATACACTGGTGCTGGCCCTTGTCTGCTGAGCATTAGGTCAACATCTTTTCCAGTGTCCCCCATCTGGGCTGATTCGAAATCAAATGAAGCTCCTATCTCCCAGGTTGACCTCTCCACCTTTGGTGAAGATTCTGTTGGTAAATCTCGATATGTAAAGCACACATCACAGGATACAGAACGGCCTGATCTTGGGAATGCTCGTGTTGTGGTTACTGGGGGCCGTGCGTTGAAAAGTGCTGAAAACTTCAAAATGATAGAAAAACTTGCAGAGAAACTTGGTGCAGCTGTTGGAGCTACCCGTGCTGCTGTTGATGCAGGATATGTTCCTAATGAGCTGCAGGTTGGCCAAACTGGAAAGATAGTTGCCCCGGAGTTGTACCTGGCTTTTGGTGTTTCAGGAGCCATTCAACATTTAGCAGGCATGAGAGATTCCAAGTACATTGTTGCTGTAAACAAAGATGCAGATGCCCCAATATTTCAGGTTGCTGACTATGGACTCGTAGGCGATATATTTGAAGTTATTCCGGAGTTGCTGGAGAAGCTTCCTGAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0019395 GO:0019752 GO:0022900 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF ETF_alpha

Protein Analysis

405

Amino Acids

43.03

Weight (kDa)

7.72

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50940
fragaria_vesca	FvH4_3g22000 FvH4_3g22000
malus_domestica	MD03G1209400.v1.1
prunus_persica	Prupe.4G205700_v2.0.a1
pyrus_communis	pycom03g15820
rosa_chinensis	RchiOBHm_Chr5g0037851
rosa_laevigata	RLG00000033817
rosa_multiflora	Rmu_sc0003735.1_g000010 Rmu_sc0005416.1_g000017
rosa_roxburghii	Rroxscaffold_1G00043070
rosa_rugosa	Rorug05G0168100
rosa_samantha	Rh5AG257000 Rh5BG259400 Rh5CG292400 Rh5DG269300
rosa_wichuraiana	Rw5G023830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	985
AccIII	TCCGGA	1 cut(s)	1180
AciI	CCGC	3 cut(s)	368, 381, 492
AclWI	GGATC	3 cut(s)	13, 216, 463
AcoI	YGGCCR	1 cut(s)	1000
AcsI	RAATTY	3 cut(s)	195, 431, 594
AcuI	CTGAAG	3 cut(s)	30, 120, 145
AfaI	GTAC	4 cut(s)	497, 649, 1034, 1094
AfiI	CCNNNNNNNGG	4 cut(s)	367, 720, 721, 845
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	8 cut(s)	187, 214, 219, 593, 886, 904, 1064, 1172
AjnI	CCWGG	2 cut(s)	756, 1035
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	9 cut(s)	50, 110, 134, 149, 746, 941, 950, 991, 1198
AluI	AGCT	9 cut(s)	50, 110, 134, 149, 746, 941, 950, 991, 1198
Alw21I	GWGCWC	1 cut(s)	52
AlwI	GGATC	3 cut(s)	13, 216, 463
Aor13HI	TCCGGA	1 cut(s)	1180
AoxI	GGCC	6 cut(s)	349, 620, 670, 836, 874, 1000
ApeKI	GCWGC	8 cut(s)	146, 296, 371, 551, 554, 938, 959, 991
ApoI	RAATTY	3 cut(s)	195, 431, 594
Asp700I	GAANNNNTTC	1 cut(s)	1176
AspLEI	GCGC	3 cut(s)	26, 287, 559
AspS9I	GGNCC	3 cut(s)	350, 671, 874
AsuC2I	CCSGG	1 cut(s)	1025
AsuHPI	GGTGA	1 cut(s)	791
AsuII	TTCGAA	1 cut(s)	731
BaeI	ACNNNNGTAYC	2 cut(s)	649, 682
BalI	TGGCCA	1 cut(s)	1002
BanII	GRGCYC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	855
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	8 cut(s)	158, 283, 358, 538, 541, 946, 950, 978
BccI	CCATC	2 cut(s)	97, 725
BceAI	ACGGC	3 cut(s)	40, 851, 861
BciT130I	CCWGG	2 cut(s)	758, 1037
BciVI	GTATCC	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	1025
BfaI	CTAG	2 cut(s)	446, 462
BfmI	CTRYAG	1 cut(s)	992
BfuAI	ACCTGC	1 cut(s)	985
BfuI	GTATCC	1 cut(s)	820
BlpI	GCTNAGC	2 cut(s)	51, 683
Bme1390I	CCNGG	3 cut(s)	758, 1025, 1037
BmgT120I	GGNCC	3 cut(s)	350, 671, 874
BmiI	GGNNCC	3 cut(s)	346, 875, 1057
BmrFI	CCNGG	3 cut(s)	758, 1025, 1037
BmrI	ACTGGG	1 cut(s)	879
BmsI	GCATC	3 cut(s)	958, 1105, 1111
BmuI	ACTGGG	1 cut(s)	879
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	1211
Bpu1102I	GCTNAGC	2 cut(s)	51, 683
Bpu14I	TTCGAA	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	1025
BsaBI	GATNNNNATC	1 cut(s)	606
BsaJI	CCNNGG	4 cut(s)	455, 545, 756, 1023
BsaWI	WCCGGW	1 cut(s)	1180
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 720, 721, 845
Bse1I	ACTGG	4 cut(s)	667, 707, 874, 1012
Bse8I	GATNNNNATC	1 cut(s)	606
BseAI	TCCGGA	1 cut(s)	1180
BseBI	CCWGG	2 cut(s)	758, 1037
BseDI	CCNNGG	4 cut(s)	455, 545, 756, 1023
BseGI	GGATG	2 cut(s)	206, 589
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	4 cut(s)	367, 720, 721, 845
BseMII	CTCAG	5 cut(s)	65, 417, 419, 674, 1194
BseNI	ACTGG	4 cut(s)	667, 707, 874, 1012
BseXI	GCAGC	8 cut(s)	158, 283, 358, 538, 541, 946, 950, 978
BsgI	GTGCAG	1 cut(s)	957
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	6 cut(s)	351, 622, 672, 838, 876, 1002
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	4 cut(s)	348, 633, 1025, 1181
BslFI	GGGAC	2 cut(s)	85, 697
BslI	CCNNNNNNNGG	4 cut(s)	367, 720, 721, 845
BsmFI	GGGAC	2 cut(s)	85, 697
BsmI	GAATGC	2 cut(s)	382, 856
BsnI	GGCC	6 cut(s)	351, 622, 672, 838, 876, 1002
Bsp119I	TTCGAA	1 cut(s)	731
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	1180
Bsp143I	GATC	5 cut(s)	5, 62, 221, 468, 841
Bsp1720I	GCTNAGC	2 cut(s)	51, 683
BspACI	CCGC	3 cut(s)	368, 381, 492
BspANI	GGCC	6 cut(s)	351, 622, 672, 838, 876, 1002
BspCNI	CTCAG	5 cut(s)	64, 418, 418, 675, 1195
BspEI	TCCGGA	1 cut(s)	1180
BspLI	GGNNCC	3 cut(s)	346, 875, 1057
BspMAI	CTGCAG	1 cut(s)	996
BspMI	ACCTGC	1 cut(s)	985
BspPI	GGATC	3 cut(s)	13, 216, 463
BspT104I	TTCGAA	1 cut(s)	731
BsrI	ACTGG	4 cut(s)	667, 707, 874, 1012
BssECI	CCNNGG	4 cut(s)	455, 545, 756, 1023
BssMI	GATC	5 cut(s)	5, 62, 221, 468, 841
BssSI	CACGAG	1 cut(s)	855
BssT1I	CCWWGG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	855
Bst2UI	CCWGG	2 cut(s)	758, 1037
Bst4CI	ACNGT	1 cut(s)	652
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	343, 670, 1075
BstDEI	CTNAG	5 cut(s)	51, 405, 426, 683, 1203
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	206, 589
BstHHI	GCGC	3 cut(s)	26, 287, 559
BstKTI	GATC	5 cut(s)	8, 65, 224, 471, 844
BstMBI	GATC	5 cut(s)	5, 62, 221, 468, 841
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	9 cut(s)	155, 293, 377, 380, 638, 947, 956, 968, 1195
BstNI	CCWGG	2 cut(s)	758, 1037
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	3 cut(s)	756, 1023, 1035
BstSFI	CTRYAG	1 cut(s)	992
BstV1I	GCAGC	8 cut(s)	158, 283, 358, 538, 541, 946, 950, 978
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	5, 221
BstYI	RGATCY	2 cut(s)	5, 221
BsuI	GTATCC	1 cut(s)	820
BsuRI	GGCC	6 cut(s)	351, 622, 672, 838, 876, 1002
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	206, 589
BtsI	GCAGTG	2 cut(s)	294, 510
BtsIMutI	CAGTG	4 cut(s)	294, 510, 660, 714
BveI	ACCTGC	1 cut(s)	985
Cac8I	GCNNGC	3 cut(s)	343, 670, 1075
CfoI	GCGC	3 cut(s)	26, 287, 559
Cfr13I	GGNCC	3 cut(s)	350, 671, 874
Csp6I	GTAC	4 cut(s)	496, 648, 1033, 1093
CviAII	CATG	4 cut(s)	251, 362, 503, 1078
CviQI	GTAC	4 cut(s)	496, 648, 1033, 1093
DdeI	CTNAG	5 cut(s)	51, 405, 426, 683, 1203
DpnI	GATC	5 cut(s)	7, 64, 223, 470, 843
DpnII	GATC	5 cut(s)	5, 62, 221, 468, 841
EaeI	YGGCCR	1 cut(s)	1000
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	3 cut(s)	30, 120, 145
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	756, 1035
EcoT14I	CCWWGG	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	4 cut(s)	254, 365, 506, 1081
FaqI	GGGAC	2 cut(s)	85, 697
FatI	CATG	4 cut(s)	250, 361, 502, 1077
FauI	CCCGC	1 cut(s)	485
FokI	GGATG	2 cut(s)	193, 596
FriOI	GRGCYC	1 cut(s)	52
FspBI	CTAG	2 cut(s)	446, 462
GlaI	GCGC	3 cut(s)	25, 286, 558
GsuI	CTGGAG	1 cut(s)	1211
HaeIII	GGCC	6 cut(s)	351, 622, 672, 838, 876, 1002
HapII	CCGG	4 cut(s)	348, 633, 1025, 1181
HhaI	GCGC	3 cut(s)	26, 287, 559
Hin1II	CATG	4 cut(s)	254, 365, 506, 1081
Hin6I	GCGC	3 cut(s)	24, 285, 557
HinP1I	GCGC	3 cut(s)	24, 285, 557
HincII	GTYRAC	2 cut(s)	696, 763
HindII	GTYRAC	2 cut(s)	696, 763
HindIII	AAGCTT	1 cut(s)	1196
HinfI	GANTC	7 cut(s)	171, 422, 602, 728, 785, 1085, 1152
HpaII	CCGG	4 cut(s)	348, 633, 1025, 1181
HphI	GGTGA	1 cut(s)	791
Hpy166II	GTNNAC	3 cut(s)	696, 763, 1108
Hpy188I	TCNGA	5 cut(s)	10, 139, 155, 427, 601
Hpy188III	TCNNGA	7 cut(s)	163, 192, 219, 801, 1053, 1181, 1202
Hpy8I	GTNNAC	3 cut(s)	696, 763, 1108
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	6 cut(s)	169, 189, 193, 220, 248, 286
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	2 cut(s)	29, 41
HpyCH4V	TGCA	6 cut(s)	299, 923, 938, 971, 994, 1118
HpyF10VI	GCNNNNNNNGC	9 cut(s)	155, 293, 377, 380, 638, 947, 956, 968, 1195
HpyF3I	CTNAG	5 cut(s)	51, 405, 426, 683, 1203
HpySE526I	ACGT	2 cut(s)	29, 41
Hsp92II	CATG	4 cut(s)	254, 365, 506, 1081
HspAI	GCGC	3 cut(s)	24, 285, 557
Kpn2I	TCCGGA	1 cut(s)	1180
Kzo9I	GATC	5 cut(s)	5, 62, 221, 468, 841
LmnI	GCTCC	5 cut(s)	47, 350, 751, 947, 1055
Lsp1109I	GCAGC	8 cut(s)	158, 283, 358, 538, 541, 946, 950, 978
LweI	GCATC	3 cut(s)	958, 1105, 1111
MaeI	CTAG	2 cut(s)	446, 462
MaeII	ACGT	2 cut(s)	29, 41
MaeIII	GTNAC	3 cut(s)	189, 389, 865
MalI	GATC	5 cut(s)	7, 64, 223, 470, 843
MboI	GATC	5 cut(s)	5, 62, 221, 468, 841
MboII	GAAGA	4 cut(s)	23, 74, 544, 794
MflI	RGATCY	2 cut(s)	5, 221
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	1002
MluCI	AATT	4 cut(s)	195, 214, 431, 594
MluNI	TGGCCA	1 cut(s)	1002
MlyI	GAGTC	1 cut(s)	1146
MmeI	TCCRAC	1 cut(s)	925
MnlI	CCTC	4 cut(s)	96, 117, 368, 776
Mox20I	TGGCCA	1 cut(s)	1002
MroI	TCCGGA	1 cut(s)	1180
MroXI	GAANNNNTTC	1 cut(s)	1176
MscI	TGGCCA	1 cut(s)	1002
MslI	CAYNNNNRTG	2 cut(s)	255, 584
Msp20I	TGGCCA	1 cut(s)	1002
MspA1I	CMGCKG	1 cut(s)	941
MspI	CCGG	4 cut(s)	348, 633, 1025, 1181
MspR9I	CCNGG	3 cut(s)	758, 1025, 1037
Mva1269I	GAATGC	2 cut(s)	382, 856
MvaI	CCWGG	2 cut(s)	758, 1037
MwoI	GCNNNNNNNGC	9 cut(s)	155, 293, 377, 380, 638, 947, 956, 968, 1195
NciI	CCSGG	1 cut(s)	1025
NdeII	GATC	5 cut(s)	5, 62, 221, 468, 841
NlaIII	CATG	4 cut(s)	254, 365, 506, 1081
NlaIV	GGNNCC	3 cut(s)	346, 875, 1057
NmuCI	GTSAC	2 cut(s)	189, 389
NspI	RCATGY	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	731
OliI	CACNNNNGTG	1 cut(s)	584
PciI	ACATGT	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PctI	GAATGC	2 cut(s)	382, 856
PdmI	GAANNNNTTC	1 cut(s)	1176
PfeI	GAWTC	6 cut(s)	171, 422, 602, 728, 785, 1085
Ple19I	CGATCG	1 cut(s)	65
PleI	GAGTC	1 cut(s)	1146
PpsI	GAGTC	1 cut(s)	1146
PscI	ACATGT	1 cut(s)	502
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	756, 1035
PspGI	CCWGG	2 cut(s)	756, 1035
PspN4I	GGNNCC	3 cut(s)	346, 875, 1057
PspPI	GGNCC	3 cut(s)	350, 671, 874
PstI	CTGCAG	1 cut(s)	996
PsuI	RGATCY	2 cut(s)	5, 221
PvuI	CGATCG	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	4 cut(s)	497, 649, 1034, 1094
RsaNI	GTAC	4 cut(s)	496, 648, 1033, 1093
RseI	CAYNNNNRTG	2 cut(s)	255, 584
SacI	GAGCTC	1 cut(s)	52
Sau3AI	GATC	5 cut(s)	5, 62, 221, 468, 841
Sau96I	GGNCC	3 cut(s)	350, 671, 874
SchI	GAGTC	1 cut(s)	1146
ScrFI	CCNGG	3 cut(s)	758, 1025, 1037
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	3 cut(s)	958, 1105, 1111
SfcI	CTRYAG	1 cut(s)	992
SfuI	TTCGAA	1 cut(s)	731
SmiMI	CAYNNNNRTG	2 cut(s)	255, 584
Sse9I	AATT	4 cut(s)	195, 214, 431, 594
SsiI	CCGC	3 cut(s)	368, 381, 492
SspI	AATATT	1 cut(s)	1131
SspMI	CTAG	2 cut(s)	446, 462
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	3 cut(s)	756, 1023, 1035
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	2 cut(s)	32, 44
TaqI	TCGA	5 cut(s)	61, 323, 655, 731, 802
TasI	AATT	4 cut(s)	195, 214, 431, 594
TatI	WGTACW	2 cut(s)	647, 1092
TauI	GCSGC	2 cut(s)	371, 383
TfiI	GAWTC	6 cut(s)	171, 422, 602, 728, 785, 1085
TscAI	CASTG	4 cut(s)	294, 517, 667, 714
TseFI	GTSAC	2 cut(s)	189, 389
TseI	GCWGC	8 cut(s)	146, 296, 371, 551, 554, 938, 959, 991
Tsp45I	GTSAC	2 cut(s)	189, 389
TspDTI	ATGAA	5 cut(s)	195, 267, 378, 513, 756
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	4 cut(s)	294, 517, 667, 714
XapI	RAATTY	3 cut(s)	195, 431, 594
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	1176
XspI	CTAG	2 cut(s)	446, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.