Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014613

Physical Location & Seq

Genomic Coordinates Reverse (-)

28873791 .. 28877808

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1209400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCAGCTTTCAGAGCCTTGAGGAAACGAATCGTTCCTTCCTTCAAGTCACGAATTTTCGCTTCATCCTTCAATTCAAGATCCATTAGCACATTGGTTTTAGCCGAACACGAAGGTGGTGCTATCAAACCCCAATCAGTCAGCGCAGTGAAGGCTGCAAGTTCTTTGAGCGACGAAAACTCGATTTCGTTGCTATTAGCAGGCTCCGGCCCTGCCCTCCACGACGCGGCTGCGAATGCTGCTTTGTGTGACCCGTCAGTTTCTCAGGTGCTTGTGGCTGATTCTGAGAAATTTAGTCATCCTCTAGCAGAACCTTGGGCTAGACTGATCCATTTGGTTCAGCAGAAAGGTGGGTACTCACATGTAATCACTGCTTCGGGTTCATTTGGGAAGAACATACTGCCACGGGCTGCTGCGCTTTTAGATGTTTCTCCAATCACGGATGTGATTGAAATTTCTGATTCTCATCTATTTGTCAGGCCAATATATGCCGGAAATGCCCTTTGTACTGTTCGATACACTGGTGCTGGCCCTTGTCTGCTGAGCATTAGATCAACATCTTTTCCAGTATCCCCCATCTCGGCTGATTCGAAATCAAATGAAGCTCCTATCTCCCAGGTTGACCTCTCCACCTTTGGTGAAGATTCTGTTTGTAAATCTCGATATGTAAAGCACACATCACAGGATACAGACCGGCCTGATCTTGGGAATGCTCGTGTTGTGGTTACTGGGGGCCGTGCGTTGAAAAGTGCTGAAAACTTCAAAATGATAGAAAAACTCGCAGAGAAACTTGGTGCAGCTGTTGGAGCTACCCGTGCTGCTGTTGATGCCGGATATGTTCCTAATGAGCTGCAGGTTGGCCAAACTGGAAAGATAGTTGCCCCGGAGTTGTACCTGGCTTTTGGTGTTTCAGGAGCCATTCAACATTTAGCAGGCATGAGAGATTCCAAGTACATTGTTGCTGTGAACAAAGATGCAGATGCCCCAATATTTCAGGTTGCTGACTATGGACTCGTAGGCGATATATTTGAAGTTATTCCGGAGTTGCTAGAGAAGCTTCCTGAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0019395 GO:0019752 GO:0022900 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF ETF_alpha

Protein Analysis

358

Amino Acids

37.73

Weight (kDa)

7.09

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	31 - 209	4.1e-38	Electron transfer flavoprotein domain
ETF_alpha	PF00766	234 - 314	8.5e-36	Electron transfer flavoprotein FAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50940
fragaria_vesca	FvH4_3g22000 FvH4_3g22000
malus_domestica	MD03G1209400.v1.1
prunus_persica	Prupe.4G205700_v2.0.a1
pyrus_communis	pycom03g15820
rosa_chinensis	RchiOBHm_Chr5g0037851
rosa_laevigata	RLG00000033817
rosa_multiflora	Rmu_sc0003735.1_g000010 Rmu_sc0005416.1_g000017
rosa_roxburghii	Rroxscaffold_1G00043070
rosa_rugosa	Rorug05G0168100
rosa_samantha	Rh5AG257000 Rh5BG259400 Rh5CG292400 Rh5DG269300
rosa_wichuraiana	Rw5G023830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	844
AccII	CGCG	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	1039
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	75, 322
AcoI	YGGCCR	1 cut(s)	859
AcsI	RAATTY	3 cut(s)	54, 290, 453
AfaI	GTAC	4 cut(s)	356, 508, 893, 953
AfiI	CCNNNNNNNGG	3 cut(s)	226, 580, 704
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	8 cut(s)	46, 73, 78, 452, 745, 763, 923, 1031
AjnI	CCWGG	2 cut(s)	615, 894
AleI	CACNNNNGTG	2 cut(s)	114, 443
AluBI	AGCT	6 cut(s)	8, 605, 800, 809, 850, 1057
AluI	AGCT	6 cut(s)	8, 605, 800, 809, 850, 1057
AlwI	GGATC	2 cut(s)	75, 322
Aor13HI	TCCGGA	1 cut(s)	1039
AoxI	GGCC	6 cut(s)	208, 479, 529, 695, 733, 859
ApeKI	GCWGC	9 cut(s)	5, 155, 230, 239, 410, 413, 797, 818, 850
ApoI	RAATTY	3 cut(s)	54, 290, 453
Asp700I	GAANNNNTTC	1 cut(s)	1035
AspLEI	GCGC	2 cut(s)	146, 418
AspS9I	GGNCC	3 cut(s)	209, 530, 733
AsuC2I	CCSGG	1 cut(s)	884
AsuHPI	GGTGA	1 cut(s)	650
AsuII	TTCGAA	1 cut(s)	590
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BalI	TGGCCA	1 cut(s)	861
BauI	CACGAG	1 cut(s)	714
BbvI	GCAGC	9 cut(s)	17, 142, 217, 226, 397, 400, 805, 809, 837
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	720
BcgI	CGANNNNNNTGC	6 cut(s)	101, 135, 172, 206, 212, 246
BciT130I	CCWGG	2 cut(s)	617, 896
BciVI	GTATCC	2 cut(s)	580, 679
BcnI	CCSGG	1 cut(s)	884
BfaI	CTAG	3 cut(s)	305, 321, 1049
BfmI	CTRYAG	1 cut(s)	851
BfuAI	ACCTGC	1 cut(s)	844
BfuI	GTATCC	2 cut(s)	580, 679
BlpI	GCTNAGC	1 cut(s)	542
Bme1390I	CCNGG	3 cut(s)	617, 884, 896
BmgT120I	GGNCC	3 cut(s)	209, 530, 733
BmiI	GGNNCC	3 cut(s)	205, 734, 916
BmrFI	CCNGG	3 cut(s)	617, 884, 896
BmrI	ACTGGG	1 cut(s)	738
BmsI	GCATC	3 cut(s)	817, 964, 970
BmuI	ACTGGG	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	884
BsaBI	GATNNNNATC	2 cut(s)	465, 556
BsaJI	CCNNGG	4 cut(s)	314, 404, 615, 882
BsaWI	WCCGGW	1 cut(s)	1039
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 580, 704
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	4 cut(s)	526, 566, 733, 871
Bse8I	GATNNNNATC	2 cut(s)	465, 556
BseAI	TCCGGA	1 cut(s)	1039
BseBI	CCWGG	2 cut(s)	617, 896
BseDI	CCNNGG	4 cut(s)	314, 404, 615, 882
BseGI	GGATG	3 cut(s)	65, 298, 448
BseJI	GATNNNNATC	2 cut(s)	465, 556
BseLI	CCNNNNNNNGG	3 cut(s)	226, 580, 704
BseMII	CTCAG	4 cut(s)	276, 278, 533, 1053
BseNI	ACTGG	4 cut(s)	526, 566, 733, 871
BseXI	GCAGC	9 cut(s)	17, 142, 217, 226, 397, 400, 805, 809, 837
BsgI	GTGCAG	1 cut(s)	816
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	6 cut(s)	210, 481, 531, 697, 735, 861
BsiSI	CCGG	6 cut(s)	207, 492, 694, 831, 884, 1040
BslI	CCNNNNNNNGG	3 cut(s)	226, 580, 704
BsmI	GAATGC	2 cut(s)	241, 715
BsnI	GGCC	6 cut(s)	210, 481, 531, 697, 735, 861
Bsp119I	TTCGAA	1 cut(s)	590
Bsp13I	TCCGGA	1 cut(s)	1039
Bsp143I	GATC	4 cut(s)	80, 327, 551, 700
Bsp1720I	GCTNAGC	1 cut(s)	542
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	6 cut(s)	210, 481, 531, 697, 735, 861
BspCNI	CTCAG	4 cut(s)	277, 277, 534, 1054
BspEI	TCCGGA	1 cut(s)	1039
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	3 cut(s)	205, 734, 916
BspMAI	CTGCAG	1 cut(s)	855
BspMI	ACCTGC	1 cut(s)	844
BspPI	GGATC	2 cut(s)	75, 322
BspT104I	TTCGAA	1 cut(s)	590
BsrFI	RCCGGY	1 cut(s)	693
BsrI	ACTGG	4 cut(s)	526, 566, 733, 871
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	4 cut(s)	314, 404, 615, 882
BssMI	GATC	4 cut(s)	80, 327, 551, 700
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	617, 896
Bst4CI	ACNGT	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	3 cut(s)	202, 529, 934
BstDEI	CTNAG	4 cut(s)	264, 285, 542, 1062
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	65, 298, 448
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	146, 418
BstKTI	GATC	4 cut(s)	83, 330, 554, 703
BstMBI	GATC	4 cut(s)	80, 327, 551, 700
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 152, 236, 239, 497, 806, 815, 827, 1054
BstNI	CCWGG	2 cut(s)	617, 896
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	615, 882, 894
BstSFI	CTRYAG	1 cut(s)	851
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	9 cut(s)	17, 142, 217, 226, 397, 400, 805, 809, 837
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuI	GTATCC	2 cut(s)	580, 679
BsuRI	GGCC	6 cut(s)	210, 481, 531, 697, 735, 861
BtgI	CCRYGG	1 cut(s)	404
BtsCI	GGATG	3 cut(s)	65, 298, 448
BtsI	GCAGTG	2 cut(s)	153, 369
BtsIMutI	CAGTG	3 cut(s)	153, 369, 519
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	3 cut(s)	202, 529, 934
CfoI	GCGC	2 cut(s)	146, 418
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	3 cut(s)	209, 530, 733
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	4 cut(s)	355, 507, 892, 952
CviAII	CATG	2 cut(s)	362, 937
CviQI	GTAC	4 cut(s)	355, 507, 892, 952
DdeI	CTNAG	4 cut(s)	264, 285, 542, 1062
DpnI	GATC	4 cut(s)	82, 329, 553, 702
DpnII	GATC	4 cut(s)	80, 327, 551, 700
EaeI	YGGCCR	1 cut(s)	859
Eco130I	CCWWGG	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	615, 894
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	2 cut(s)	365, 940
FaiI	YATR	9 cut(s)	363, 398, 487, 489, 666, 837, 938, 1008, 1025
FatI	CATG	2 cut(s)	361, 936
FokI	GGATG	3 cut(s)	52, 285, 455
FspBI	CTAG	3 cut(s)	305, 321, 1049
GlaI	GCGC	2 cut(s)	145, 417
HaeIII	GGCC	6 cut(s)	210, 481, 531, 697, 735, 861
HapII	CCGG	6 cut(s)	207, 492, 694, 831, 884, 1040
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	2 cut(s)	146, 418
Hin1II	CATG	2 cut(s)	365, 940
Hin6I	GCGC	2 cut(s)	144, 416
HinP1I	GCGC	2 cut(s)	144, 416
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	1 cut(s)	1055
HinfI	GANTC	7 cut(s)	30, 281, 461, 587, 644, 944, 1011
HpaII	CCGG	6 cut(s)	207, 492, 694, 831, 884, 1040
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	2 cut(s)	622, 967
Hpy188I	TCNGA	3 cut(s)	14, 286, 460
Hpy188III	TCNNGA	6 cut(s)	51, 78, 660, 912, 1040, 1061
Hpy8I	GTNNAC	2 cut(s)	622, 967
Hpy99I	CGWCG	2 cut(s)	176, 227
HpyAV	CCTTC	5 cut(s)	48, 52, 79, 107, 145
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	4 cut(s)	158, 797, 853, 977
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 152, 236, 239, 497, 806, 815, 827, 1054
HpyF3I	CTNAG	4 cut(s)	264, 285, 542, 1062
Hsp92II	CATG	2 cut(s)	365, 940
HspAI	GCGC	2 cut(s)	144, 416
Kpn2I	TCCGGA	1 cut(s)	1039
Kzo9I	GATC	4 cut(s)	80, 327, 551, 700
LmnI	GCTCC	4 cut(s)	209, 610, 806, 914
Lsp1109I	GCAGC	9 cut(s)	17, 142, 217, 226, 397, 400, 805, 809, 837
LweI	GCATC	3 cut(s)	817, 964, 970
MaeI	CTAG	3 cut(s)	305, 321, 1049
MaeIII	GTNAC	3 cut(s)	48, 248, 724
MalI	GATC	4 cut(s)	82, 329, 553, 702
MboI	GATC	4 cut(s)	80, 327, 551, 700
MboII	GAAGA	2 cut(s)	403, 653
MflI	RGATCY	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	861
MluCI	AATT	4 cut(s)	54, 73, 290, 453
MluNI	TGGCCA	1 cut(s)	861
MlyI	GAGTC	1 cut(s)	1005
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	4 cut(s)	15, 227, 312, 635
Mox20I	TGGCCA	1 cut(s)	861
MroI	TCCGGA	1 cut(s)	1039
MroXI	GAANNNNTTC	1 cut(s)	1035
MscI	TGGCCA	1 cut(s)	861
MslI	CAYNNNNRTG	2 cut(s)	114, 443
Msp20I	TGGCCA	1 cut(s)	861
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	6 cut(s)	207, 492, 694, 831, 884, 1040
MspR9I	CCNGG	3 cut(s)	617, 884, 896
Mva1269I	GAATGC	2 cut(s)	241, 715
MvaI	CCWGG	2 cut(s)	617, 896
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	9 cut(s)	14, 152, 236, 239, 497, 806, 815, 827, 1054
NciI	CCSGG	1 cut(s)	884
NdeII	GATC	4 cut(s)	80, 327, 551, 700
NlaIII	CATG	2 cut(s)	365, 940
NlaIV	GGNNCC	3 cut(s)	205, 734, 916
NmeAIII	GCCGAG	1 cut(s)	560
NmuCI	GTSAC	2 cut(s)	48, 248
NspI	RCATGY	1 cut(s)	365
NspV	TTCGAA	1 cut(s)	590
OliI	CACNNNNGTG	2 cut(s)	114, 443
PciI	ACATGT	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PctI	GAATGC	2 cut(s)	241, 715
PdmI	GAANNNNTTC	1 cut(s)	1035
PfeI	GAWTC	6 cut(s)	30, 281, 461, 587, 644, 944
PleI	GAGTC	1 cut(s)	1005
PpsI	GAGTC	1 cut(s)	1005
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	615, 894
PspGI	CCWGG	2 cut(s)	615, 894
PspN4I	GGNNCC	3 cut(s)	205, 734, 916
PspPI	GGNCC	3 cut(s)	209, 530, 733
PstI	CTGCAG	1 cut(s)	855
PsuI	RGATCY	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	4 cut(s)	356, 508, 893, 953
RsaNI	GTAC	4 cut(s)	355, 507, 892, 952
RseI	CAYNNNNRTG	2 cut(s)	114, 443
Sau3AI	GATC	4 cut(s)	80, 327, 551, 700
Sau96I	GGNCC	3 cut(s)	209, 530, 733
SchI	GAGTC	1 cut(s)	1005
ScrFI	CCNGG	3 cut(s)	617, 884, 896
SfaNI	GCATC	3 cut(s)	817, 964, 970
SfcI	CTRYAG	1 cut(s)	851
SfuI	TTCGAA	1 cut(s)	590
SmiMI	CAYNNNNRTG	2 cut(s)	114, 443
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	4 cut(s)	54, 73, 290, 453
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	990
SspMI	CTAG	3 cut(s)	305, 321, 1049
StyD4I	CCNGG	3 cut(s)	615, 882, 894
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	4 cut(s)	182, 514, 590, 661
TasI	AATT	4 cut(s)	54, 73, 290, 453
TatI	WGTACW	2 cut(s)	506, 951
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	6 cut(s)	30, 281, 461, 587, 644, 944
TscAI	CASTG	3 cut(s)	153, 376, 526
TseFI	GTSAC	2 cut(s)	48, 248
TseI	GCWGC	9 cut(s)	5, 155, 230, 239, 410, 413, 797, 818, 850
Tsp45I	GTSAC	2 cut(s)	48, 248
TspDTI	ATGAA	3 cut(s)	54, 372, 615
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	3 cut(s)	153, 376, 526
XapI	RAATTY	3 cut(s)	54, 290, 453
XceI	RCATGY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	1035
XspI	CTAG	3 cut(s)	305, 321, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.