Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005416.1

Orthogroup ID

OG0014613

Physical Location & Seq

Genomic Coordinates Forward (+)

71084 .. 74144

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005416.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggcaactggagcagccctcagagctttcaggaaacgaatcattccttccttcacatcccaaaccttcgcttcaaccttcaattctcgatccattagcacgctggttttagctgaacatgaaggtagctctctcaaaatccaatccgtgagcgcagtaaaggcagccaagtctctaagcaaggacaattccatttcgttgctgttggctgggtccggccctggcctccatgaggccgccgcacaagcggcttcgtgcgacccttcagtgtctcaggtgcttgtggctgattctgatgagtttagtcatcctctggcagaaccttgggctaaactggtccagttggttcagcagaaaggcgggtactcacatgtgatcacaacttcaggatcatttgggaagaacataatgccacgggcagctgctcttttggatgtttctccaatcacggatgtgactggaatctccgagcctcatctatttgtcaggccaatatatgctggaaatgcactttgtactgttcgatacactggtgttggcccttgtctgttgaccattagagcaacatcctttccggtttctcccatcacatctgattcaaaatctaatgaagcttccatctcccaggttgatctctccacctttggtgaagattctgttggcaaatctcgatatgttaagcacacatcccaggatatagagcgccctgatcttggaaatgcccgtgttgtgattacaggtgggcgtgcgctaaaaagtgctgaaaacttcaaaatgatagaaaagcttgcagaaaaacttggtgcagctggatatgttcctaatgacctgcaggcggcgatggctgctctgtggttgccggacgaaccctctgaacatcccgaaccactttccagttgggtggactcgccggtaaccactttgcaatcgaccttgatcggactaccactttgcagtcgaccacgctgcccagacctccgacctcgatctctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0019395 GO:0019752 GO:0022900 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF ETF_alpha

Protein Analysis

331

Amino Acids

35.1

Weight (kDa)

7.68

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50940
fragaria_vesca	FvH4_3g22000 FvH4_3g22000
malus_domestica	MD03G1209400.v1.1
prunus_persica	Prupe.4G205700_v2.0.a1
pyrus_communis	pycom03g15820
rosa_chinensis	RchiOBHm_Chr5g0037851
rosa_laevigata	RLG00000033817
rosa_multiflora	Rmu_sc0003735.1_g000010 Rmu_sc0005416.1_g000017
rosa_roxburghii	Rroxscaffold_1G00043070
rosa_rugosa	Rorug05G0168100
rosa_samantha	Rh5AG257000 Rh5BG259400 Rh5CG292400 Rh5DG269300
rosa_wichuraiana	Rw5G023830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	837
AccI	GTMKAC	1 cut(s)	958
AciI	CCGC	5 cut(s)	237, 240, 248, 360, 836
AclWI	GGATC	2 cut(s)	84, 397
AcuI	CTGAAG	2 cut(s)	249, 369
AfaI	GTAC	2 cut(s)	365, 517
AfiI	CCNNNNNNNGG	3 cut(s)	232, 713, 835
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	75, 82, 600, 772
AjnI	CCWGG	3 cut(s)	220, 624, 690
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	7 cut(s)	26, 113, 129, 422, 614, 787, 809
AluI	AGCT	7 cut(s)	26, 113, 129, 422, 614, 787, 809
Alw26I	GTCTC	2 cut(s)	177, 276
AlwI	GGATC	2 cut(s)	84, 397
AoxI	GGCC	5 cut(s)	217, 223, 234, 488, 538
ApeKI	GCWGC	7 cut(s)	14, 164, 419, 422, 806, 845, 966
ArsI	GACNNNNNNTTYG	2 cut(s)	933, 965
AspLEI	GCGC	3 cut(s)	155, 705, 751
AspS9I	GGNCC	4 cut(s)	213, 218, 337, 539
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	213, 337
BaeI	ACNNNNGTAYC	2 cut(s)	517, 550
BbvI	GCAGC	7 cut(s)	26, 176, 409, 431, 818, 832, 953
BccI	CCATC	3 cut(s)	593, 626, 835
BcgI	CGANNNNNNTGC	2 cut(s)	948, 982
BciT130I	CCWGG	3 cut(s)	222, 626, 692
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	177, 276
BfmI	CTRYAG	1 cut(s)	830
BfoI	RGCGCY	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	837
Bme1390I	CCNGG	3 cut(s)	222, 626, 692
Bme18I	GGWCC	2 cut(s)	213, 337
BmgT120I	GGNCC	4 cut(s)	213, 218, 337, 539
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	3 cut(s)	222, 626, 692
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	5 cut(s)	220, 323, 413, 624, 690
BsaWI	WCCGGW	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 713, 835
Bse118I	RCCGGY	1 cut(s)	910
Bse1I	ACTGG	6 cut(s)	13, 339, 340, 463, 535, 894
BseBI	CCWGG	3 cut(s)	222, 626, 692
BseDI	CCNNGG	5 cut(s)	220, 323, 413, 624, 690
BseGI	GGATG	7 cut(s)	56, 307, 439, 457, 566, 686, 877
BseLI	CCNNNNNNNGG	3 cut(s)	232, 713, 835
BseMII	CTCAG	2 cut(s)	34, 287
BseNI	ACTGG	6 cut(s)	13, 339, 340, 463, 535, 894
BseXI	GCAGC	7 cut(s)	26, 176, 409, 431, 818, 832, 953
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	5 cut(s)	219, 225, 236, 490, 540
BsiSI	CCGG	4 cut(s)	216, 575, 860, 911
BslI	CCNNNNNNNGG	3 cut(s)	232, 713, 835
BsmAI	GTCTC	2 cut(s)	177, 276
BsnI	GGCC	5 cut(s)	219, 225, 236, 490, 540
Bsp143I	GATC	7 cut(s)	89, 375, 389, 631, 709, 936, 986
BspACI	CCGC	5 cut(s)	237, 240, 248, 360, 836
BspANI	GGCC	5 cut(s)	219, 225, 236, 490, 540
BspCNI	CTCAG	2 cut(s)	33, 286
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	834
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	2 cut(s)	84, 397
BsrFI	RCCGGY	1 cut(s)	910
BsrI	ACTGG	6 cut(s)	13, 339, 340, 463, 535, 894
BssAI	RCCGGY	1 cut(s)	910
BssECI	CCNNGG	5 cut(s)	220, 323, 413, 624, 690
BssMI	GATC	7 cut(s)	89, 375, 389, 631, 709, 936, 986
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	3 cut(s)	222, 626, 692
Bst4CI	ACNGT	1 cut(s)	520
BstC8I	GCNNGC	4 cut(s)	101, 747, 789, 834
BstDEI	CTNAG	3 cut(s)	20, 176, 273
BstDSI	CCRYGG	1 cut(s)	413
BstEII	GGTNACC	1 cut(s)	913
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	7 cut(s)	56, 307, 439, 457, 566, 686, 877
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	3 cut(s)	155, 705, 751
BstKTI	GATC	7 cut(s)	92, 378, 392, 634, 712, 939, 989
BstMAI	GTCTC	2 cut(s)	177, 276
BstMBI	GATC	7 cut(s)	89, 375, 389, 631, 709, 936, 986
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 23, 161, 245, 248, 506, 842, 845
BstNI	CCWGG	3 cut(s)	222, 626, 692
BstNSI	RCATGY	1 cut(s)	374
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	3 cut(s)	220, 624, 690
BstSFI	CTRYAG	1 cut(s)	830
BstV1I	GCAGC	7 cut(s)	26, 176, 409, 431, 818, 832, 953
BstXI	CCANNNNNNTGG	1 cut(s)	901
BsuRI	GGCC	5 cut(s)	219, 225, 236, 490, 540
BtgI	CCRYGG	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	854
BtsCI	GGATG	7 cut(s)	56, 307, 439, 457, 566, 686, 877
BtsIMutI	CAGTG	2 cut(s)	273, 528
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	4 cut(s)	101, 747, 789, 834
CfoI	GCGC	3 cut(s)	155, 705, 751
Cfr10I	RCCGGY	1 cut(s)	910
Cfr13I	GGNCC	4 cut(s)	213, 218, 337, 539
Csp6I	GTAC	2 cut(s)	364, 516
CviAII	CATG	3 cut(s)	119, 230, 371
CviQI	GTAC	2 cut(s)	364, 516
DdeI	CTNAG	3 cut(s)	20, 176, 273
DpnI	GATC	7 cut(s)	91, 377, 391, 633, 711, 938, 988
DpnII	GATC	7 cut(s)	89, 375, 389, 631, 709, 936, 986
Eco130I	CCWWGG	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	213, 337
Eco57I	CTGAAG	2 cut(s)	249, 369
Eco91I	GGTNACC	1 cut(s)	913
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	913
EcoRII	CCWGG	3 cut(s)	220, 624, 690
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	3 cut(s)	122, 233, 374
FaiI	YATR	9 cut(s)	120, 231, 372, 407, 496, 498, 675, 698, 816
FatI	CATG	3 cut(s)	118, 229, 370
FauI	CCCGC	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	375
FblI	GTMKAC	1 cut(s)	958
FokI	GGATG	7 cut(s)	43, 294, 446, 464, 553, 673, 864
GlaI	GCGC	3 cut(s)	154, 704, 750
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	5 cut(s)	219, 225, 236, 490, 540
HapII	CCGG	4 cut(s)	216, 575, 860, 911
HhaI	GCGC	3 cut(s)	155, 705, 751
Hin1II	CATG	3 cut(s)	122, 233, 374
Hin6I	GCGC	3 cut(s)	153, 703, 749
HinP1I	GCGC	3 cut(s)	153, 703, 749
HincII	GTYRAC	2 cut(s)	552, 959
HindII	GTYRAC	2 cut(s)	552, 959
HindIII	AAGCTT	2 cut(s)	612, 785
HinfI	GANTC	6 cut(s)	39, 290, 462, 596, 653, 905
HpaII	CCGG	4 cut(s)	216, 575, 860, 911
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	3 cut(s)	552, 904, 959
Hpy188I	TCNGA	7 cut(s)	23, 295, 469, 595, 874, 941, 980
Hpy188III	TCNNGA	5 cut(s)	31, 87, 387, 669, 881
Hpy8I	GTNNAC	3 cut(s)	552, 904, 959
HpyAV	CCTTC	6 cut(s)	57, 61, 76, 88, 116, 273
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	6 cut(s)	509, 791, 806, 832, 925, 954
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 23, 161, 245, 248, 506, 842, 845
HpyF3I	CTNAG	3 cut(s)	20, 176, 273
Hsp92II	CATG	3 cut(s)	122, 233, 374
HspAI	GCGC	3 cut(s)	153, 703, 749
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	7 cut(s)	89, 375, 389, 631, 709, 936, 986
LmnI	GCTCC	1 cut(s)	11
Lsp1109I	GCAGC	7 cut(s)	26, 176, 409, 431, 818, 832, 953
MaeIII	GTNAC	2 cut(s)	454, 913
MalI	GATC	7 cut(s)	91, 377, 391, 633, 711, 938, 988
MboI	GATC	7 cut(s)	89, 375, 389, 631, 709, 936, 986
MboII	GAAGA	2 cut(s)	412, 662
MluCI	AATT	2 cut(s)	82, 187
MlyI	GAGTC	1 cut(s)	899
MnlI	CCTC	8 cut(s)	29, 226, 236, 321, 483, 880, 986, 993
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	2 cut(s)	422, 809
MspI	CCGG	4 cut(s)	216, 575, 860, 911
MspR9I	CCNGG	3 cut(s)	222, 626, 692
MvaI	CCWGG	3 cut(s)	222, 626, 692
MwoI	GCNNNNNNNGC	8 cut(s)	11, 23, 161, 245, 248, 506, 842, 845
NdeII	GATC	7 cut(s)	89, 375, 389, 631, 709, 936, 986
NlaIII	CATG	3 cut(s)	122, 233, 374
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	374
OliI	CACNNNNGTG	1 cut(s)	452
PciI	ACATGT	1 cut(s)	370
PfeI	GAWTC	5 cut(s)	39, 290, 462, 596, 653
PleI	GAGTC	1 cut(s)	899
PpsI	GAGTC	1 cut(s)	899
PscI	ACATGT	1 cut(s)	370
Psp6I	CCWGG	3 cut(s)	220, 624, 690
PspEI	GGTNACC	1 cut(s)	913
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	220, 624, 690
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	4 cut(s)	213, 218, 337, 539
PstI	CTGCAG	1 cut(s)	834
PvuII	CAGCTG	2 cut(s)	422, 809
RsaI	GTAC	2 cut(s)	365, 517
RsaNI	GTAC	2 cut(s)	364, 516
RseI	CAYNNNNRTG	1 cut(s)	452
SalI	GTCGAC	1 cut(s)	957
SaqAI	TTAA	1 cut(s)	678
Sau3AI	GATC	7 cut(s)	89, 375, 389, 631, 709, 936, 986
Sau96I	GGNCC	4 cut(s)	213, 218, 337, 539
SbfI	CCTGCAGG	1 cut(s)	834
SchI	GAGTC	1 cut(s)	899
ScrFI	CCNGG	3 cut(s)	222, 626, 692
SdaI	CCTGCAGG	1 cut(s)	834
SfcI	CTRYAG	1 cut(s)	830
SinI	GGWCC	2 cut(s)	213, 337
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse8387I	CCTGCAGG	1 cut(s)	834
Sse9I	AATT	2 cut(s)	82, 187
SsiI	CCGC	5 cut(s)	237, 240, 248, 360, 836
StyD4I	CCNGG	3 cut(s)	220, 624, 690
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	6 cut(s)	88, 523, 670, 929, 958, 985
TasI	AATT	2 cut(s)	82, 187
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	4 cut(s)	239, 242, 251, 839
TfiI	GAWTC	5 cut(s)	39, 290, 462, 596, 653
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	2 cut(s)	273, 535
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	7 cut(s)	14, 164, 419, 422, 806, 845, 966
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	135, 624
TspGWI	ACGGA	2 cut(s)	136, 464
TspRI	CASTG	2 cut(s)	273, 535
VpaK11BI	GGWCC	2 cut(s)	213, 337
XagI	CCTNNNNNAGG	1 cut(s)	230
XceI	RCATGY	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	2 cut(s)	100, 894
XmiI	GTMKAC	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.