FvH4_3g23270

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016793
Physical Location & Seq
Reverse (-)
16354852 .. 16355508
657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23270.t1

Sequence Viewer

Length: 657 bp
ATGAAGAACTGTGAGAAATCTCAAATCCTAATGCTTTCTCTAATTCTTATTCTTCTCATCGTCACACCTCTTTTATCCTCATCAGTAAGGACTACCTATCTCTACATCATCACTAACCTCGTCATCATTGCCCTCGGAGCACAGGCTGGTATTCTCAGAGCCTTCTCCAAGCCTATAGATCATGACAAGAAGAACCCAGTTTCTGTTCCTCAAAAACCAGTACTGGTGGTACCCTCAGAATTAGCCTCTACTCATGAGAAAACTCAGAAAAAGGTTGCTGCCCAAAACCAAGAAGATCAAAGGGTTGCTTCTGAATGTTCCGAAAAGAATGTTCCTAATAAGGTGGTTGCGAAAAGCAAGTCTCAGAAGGTTACTGGTACTGTGAAAACGGAGAGTGTGAGAAAGTGTCCTTCCATGCCTAGCCTTTTTTTCATAGGTGGTGGAGAGACTGAGACTGAAGGAGCTCATAGTGATGACGATGATGATGTTCTTGAGGACTTCCATCAGATAGAGGAGGAAGAAGAGGTAGCAGATCTTAGTGGTCAAGAGCTTTTAATCAAAGCTGAGAAATTTATCGGGAACTTCTACAAGCAGTTGAAGATGCAGAGGGAAGAGTCATGGAAAAGGATTCATGGGATGTATCACAAAGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

219

Amino Acids

24.38

Weight (kDa)

6.32

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 187 - 215 2.6e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23270
malus_domestica MD03G1195800.v1.1 MD11G1212200.v1.1
prunus_persica Prupe.4G220200_v2.0.a1 Prupe.4G220300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040991
rosa_laevigata RLG00000034018
rosa_roxburghii Rroxscaffold_1G00039710
rosa_rugosa Rorug05G0189300
rosa_samantha Rh5AG274500 Rh5BG279800 Rh5CG311900 Rh5DG287800
rosa_wichuraiana Rw5G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 229
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 3 cut(s) 222, 231, 379
AgsI TTSAA 1 cut(s) 598
AluBI AGCT 3 cut(s) 464, 550, 563
AluI AGCT 3 cut(s) 464, 550, 563
Alw21I GWGCWC 2 cut(s) 142, 466
Alw26I GTCTC 3 cut(s) 366, 440, 446
AlwNI CAGNNNCTG 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 569
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
Asp718I GGTACC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 466
Bbv12I GWGCWC 2 cut(s) 142, 466
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 510
BcoDI GTCTC 3 cut(s) 366, 440, 446
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 532
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 591
BmuI ACTGGG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 133
Bse1I ACTGG 4 cut(s) 197, 218, 228, 379
Bse3DI GCAATG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 642
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 6 cut(s) 169, 249, 278, 377, 441, 555
BseNI ACTGG 4 cut(s) 197, 218, 228, 379
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 1 cut(s) 265
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 142, 466
BsmAI GTCTC 3 cut(s) 366, 440, 446
Bsp1286I GDGCHC 2 cut(s) 142, 466
Bsp143I GATC 3 cut(s) 178, 295, 532
BspCNI CTCAG 6 cut(s) 168, 248, 277, 376, 442, 556
BspHI TCATGA 2 cut(s) 181, 253
BspLI GGNNCC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 4 cut(s) 197, 218, 228, 379
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 178, 295, 532
Bst4CI ACNGT 2 cut(s) 11, 382
Bst6I CTCTTC 2 cut(s) 516, 606
BstDEI CTNAG 7 cut(s) 155, 235, 264, 363, 450, 536, 564
BstF5I GGATG 1 cut(s) 642
BstKTI GATC 3 cut(s) 181, 298, 535
BstMAI GTCTC 3 cut(s) 366, 440, 446
BstMBI GATC 3 cut(s) 178, 295, 532
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BtsCI GGATG 1 cut(s) 642
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 2 cut(s) 181, 253
Csp6I GTAC 3 cut(s) 221, 230, 378
CviAII CATG 5 cut(s) 182, 254, 415, 618, 632
CviJI RGCY 9 cut(s) 146, 161, 172, 245, 423, 464, 550, 563, 650
CviKI_1 RGCY 9 cut(s) 146, 161, 172, 245, 423, 464, 550, 563, 650
CviQI GTAC 3 cut(s) 221, 230, 378
DdeI CTNAG 7 cut(s) 155, 235, 264, 363, 450, 536, 564
DpnI GATC 3 cut(s) 180, 297, 534
DpnII GATC 3 cut(s) 178, 295, 532
Eam1104I CTCTTC 2 cut(s) 516, 606
EarI CTCTTC 2 cut(s) 516, 606
Ecl136II GAGCTC 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 466
FaeI CATG 5 cut(s) 185, 257, 418, 621, 635
FaiI YATR 8 cut(s) 176, 183, 255, 416, 434, 468, 619, 633
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FatI CATG 5 cut(s) 181, 253, 414, 617, 631
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 649
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 279
Hin1II CATG 5 cut(s) 185, 257, 418, 621, 635
HinfI GANTC 2 cut(s) 614, 628
Hpy188I TCNGA 8 cut(s) 137, 158, 238, 267, 313, 322, 366, 507
Hpy188III TCNNGA 5 cut(s) 182, 254, 491, 545, 577
HpyAV CCTTC 4 cut(s) 172, 361, 420, 452
HpyCH4III ACNGT 2 cut(s) 11, 382
HpyCH4V TGCA 1 cut(s) 604
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 7 cut(s) 155, 235, 264, 363, 450, 536, 564
Hsp92II CATG 5 cut(s) 185, 257, 418, 621, 635
KpnI GGTACC 1 cut(s) 233
Kzo9I GATC 3 cut(s) 178, 295, 532
LmnI GCTCC 2 cut(s) 137, 461
LpnPI CCDG 6 cut(s) 128, 132, 209, 210, 231, 360
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 591
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 61, 370
MalI GATC 3 cut(s) 180, 297, 534
MboI GATC 3 cut(s) 178, 295, 532
MboII GAAGA 8 cut(s) 16, 44, 202, 305, 530, 533, 610, 623
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 2 cut(s) 142, 466
MluCI AATT 3 cut(s) 42, 239, 569
MlyI GAGTC 1 cut(s) 623
MseI TTAA 1 cut(s) 554
MslI CAYNNNNRTG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 3 cut(s) 178, 295, 532
NlaIII CATG 5 cut(s) 185, 257, 418, 621, 635
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 2 cut(s) 181, 253
PfeI GAWTC 1 cut(s) 628
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Psp124BI GAGCTC 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 3 cut(s) 222, 231, 379
RsaNI GTAC 3 cut(s) 221, 230, 378
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 466
SaqAI TTAA 1 cut(s) 554
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 178, 295, 532
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 1 cut(s) 623
SduI GDGCHC 2 cut(s) 142, 466
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 3 cut(s) 42, 239, 569
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 466
TaaI ACNGT 2 cut(s) 11, 382
TasI AATT 3 cut(s) 42, 239, 569
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 17, 421, 620
TspGWI ACGGA 1 cut(s) 404
XapI RAATTY 1 cut(s) 569
XspI CTAG 1 cut(s) 420
ZrmI AGTACT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.