Rroxscaffold_1G00039710

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016793
Physical Location & Seq
Forward (+)
57367369 .. 57368013
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039710.1

Sequence Viewer

Length: 645 bp
ATGAAGAACTGTGAAAAATCTCAAATCCTAATGCTTTCTCTGATAGCTATTCTTCTCATCGTCACACCTCTTTTATCCTCGTCAGTAAGAACTACCTATCTCTACATCATCACTAACCTCCTCATCATTGCCCTCGGAGCACAGGCCGGTGTCCTCAAAGCCTTTTCCAAGCCTATAGATCATGAGAAGAAGAACCCAGTTTCTGTTCCTCAAAAACCTGTGTTGGCGGTGCCCTCAGAATTAGCCTCTACTGAGAAAAGGGTTGATGCCCAAAATGATGAAGATCAAGGGGTTACTTCGGAATTTTCCGGAAAGAATGGTGCTAATAAGGTTGTTGCAAAAAGCAAGTCTCAGAAGGTTACTGGCACTGTGAAAATGGAGAGCGTGAAAAAGTGTCCTTCCATGCCTAGCCTTTTCTTCATAGGTGGTGGTGAGACTGAGACTGAATTAGGAGCTCATAATGATGATGATGATGAGGTTGAGGACTTCCATCAACTAGAGGAGGAAGAAGATGTAGCAGATCTTAGTGGTCAAGAGCTTTTAATCAAAGCTGAGACTTTTATCGGGAACTTCTACAAGCAGTTGAAGATGCAGAGGGAAGAGTCATGGAAAAGGATTCATGGGATTTATCACAAAGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

214

Amino Acids

23.68

Weight (kDa)

5.46

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 183 - 211 1.3e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23270
malus_domestica MD03G1195800.v1.1 MD11G1212200.v1.1
prunus_persica Prupe.4G220200_v2.0.a1 Prupe.4G220300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040991
rosa_laevigata RLG00000034018
rosa_roxburghii Rroxscaffold_1G00039710
rosa_rugosa Rorug05G0189300
rosa_samantha Rh5AG274500 Rh5BG279800 Rh5CG311900 Rh5DG287800
rosa_wichuraiana Rw5G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 302
AgsI TTSAA 1 cut(s) 586
AluBI AGCT 4 cut(s) 47, 455, 538, 551
AluI AGCT 4 cut(s) 47, 455, 538, 551
Alw21I GWGCWC 2 cut(s) 142, 457
Alw26I GTCTC 4 cut(s) 354, 428, 434, 548
AlwNI CAGNNNCTG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 308
AoxI GGCC 1 cut(s) 144
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AsuHPI GGTGA 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 2 cut(s) 142, 457
BccI CCATC 1 cut(s) 498
BcoDI GTCTC 4 cut(s) 354, 428, 434, 548
BfaI CTAG 2 cut(s) 408, 497
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 520
BmiI GGNNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 256, 579
BmuI ACTGGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 197, 367
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 282
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 5 cut(s) 243, 249, 365, 429, 543
BseNI ACTGG 2 cut(s) 197, 367
BseRI GAGGAG 2 cut(s) 110, 515
BseSI GKGCMC 1 cut(s) 234
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 142, 457
BsiSI CCGG 2 cut(s) 147, 309
BsmAI GTCTC 4 cut(s) 354, 428, 434, 548
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 3 cut(s) 142, 234, 457
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 3 cut(s) 178, 283, 520
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 5 cut(s) 244, 248, 364, 430, 544
BspEI TCCGGA 1 cut(s) 308
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 197, 367
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 178, 283, 520
Bst4CI ACNGT 2 cut(s) 11, 370
Bst6I CTCTTC 1 cut(s) 594
BstDEI CTNAG 6 cut(s) 235, 252, 351, 438, 524, 552
BstKTI GATC 3 cut(s) 181, 286, 523
BstMAI GTCTC 4 cut(s) 354, 428, 434, 548
BstMBI GATC 3 cut(s) 178, 283, 520
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 146
CviAII CATG 4 cut(s) 182, 403, 606, 620
DdeI CTNAG 6 cut(s) 235, 252, 351, 438, 524, 552
DpnI GATC 3 cut(s) 180, 285, 522
DpnII GATC 3 cut(s) 178, 283, 520
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 457
FaeI CATG 4 cut(s) 185, 406, 609, 623
FaiI YATR 7 cut(s) 176, 183, 404, 422, 459, 607, 621
FatI CATG 4 cut(s) 181, 402, 605, 619
FriOI GRGCYC 1 cut(s) 457
FspBI CTAG 2 cut(s) 408, 497
HaeIII GGCC 1 cut(s) 146
HapII CCGG 2 cut(s) 147, 309
Hin1II CATG 4 cut(s) 185, 406, 609, 623
HinfI GANTC 2 cut(s) 602, 616
HpaII CCGG 2 cut(s) 147, 309
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 5 cut(s) 42, 137, 238, 301, 354
Hpy188III TCNNGA 4 cut(s) 182, 309, 533, 565
HpyAV CCTTC 2 cut(s) 349, 408
HpyCH4III ACNGT 2 cut(s) 11, 370
HpyCH4V TGCA 2 cut(s) 338, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 6 cut(s) 235, 252, 351, 438, 524, 552
Hsp92II CATG 4 cut(s) 185, 406, 609, 623
Kpn2I TCCGGA 1 cut(s) 308
Kzo9I GATC 3 cut(s) 178, 283, 520
LmnI GCTCC 2 cut(s) 137, 452
LpnPI CCDG 6 cut(s) 128, 160, 210, 231, 322, 348
LweI GCATC 2 cut(s) 256, 579
MaeI CTAG 2 cut(s) 408, 497
MaeIII GTNAC 3 cut(s) 61, 292, 358
MalI GATC 3 cut(s) 180, 285, 522
MboI GATC 3 cut(s) 178, 283, 520
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 3 cut(s) 142, 234, 457
MluCI AATT 3 cut(s) 239, 302, 446
MlyI GAGTC 1 cut(s) 611
MroI TCCGGA 1 cut(s) 308
MseI TTAA 1 cut(s) 542
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 2 cut(s) 147, 309
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 3 cut(s) 178, 283, 520
NlaIII CATG 4 cut(s) 185, 406, 609, 623
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 1 cut(s) 616
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 462
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 542
Sau3AI GATC 3 cut(s) 178, 283, 520
SchI GAGTC 1 cut(s) 611
SduI GDGCHC 3 cut(s) 142, 234, 457
SfaNI GCATC 2 cut(s) 256, 579
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 3 cut(s) 239, 302, 446
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 408, 497
SstI GAGCTC 1 cut(s) 457
TaaI ACNGT 2 cut(s) 11, 370
TasI AATT 3 cut(s) 239, 302, 446
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 17, 294, 409, 608
TspRI CASTG 1 cut(s) 373
XapI RAATTY 1 cut(s) 302
XspI CTAG 2 cut(s) 408, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.