MD03G1195800.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016793
Physical Location & Seq
Forward (+)
26813990 .. 26814652
663 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1195800.v1.1.491

Sequence Viewer

Length: 663 bp
ATGAGCAAGTTTAATGAAAAATCTCAGATTCTTATGTTTTCTCTGCTAGTTATTCTTCTCGTCCTTGCACCTTTGTTGTCCTCATCCCTAAGGACTCCTTACCTCTACATCATCACTAACCTCCTCATCATCGCCCTCGGAGCGCAAGCCGGCCTCCTCTCATCTTTTACCGAACATAATTCAGACAATGACAAGAAGAATGGCTCCGGCACCGGTTTTTCTTTTGCTCCCAAACCTGTGGTTCCCACGGAATTGGCCTCCTCCGACAAAAGGGTTGTTGCCCGTAACGATGAAAATCAAACGGTTGTTGCTCCACAATATGCTGAAAAGAAGGCTAGGGTTGTTGAGAAATCCAAGTCTGAGAAGATTGTGGACACTGTGAAGGTGGAGAGTGTGAAGAAGTGTACTTCTATGCGTAGTCTTTTCTTCATAGGGGGAGGTGAGACCGATCATGGAGATTACGAGGTGATCGGGGAAAAGCGTTATGTGGAGGAAGAAGAAGAAGAAGTTTTGGGGGAGCTTAGCCGGCAAGAGCTTTTTGCAAAAGCTGAGAACTTTATTGGCAACTTCTACAAGCAGCTGAAAATGCAGAGAGAAGACTCATGGAAGAATATTCATGAGTTTTATCACATGCCTTCTAATAATTCTGCTGCAATTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

221

Amino Acids

24.7

Weight (kDa)

5.89

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 177 - 208 3e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23270
malus_domestica MD03G1195800.v1.1 MD11G1212200.v1.1
prunus_persica Prupe.4G220200_v2.0.a1 Prupe.4G220300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040991
rosa_laevigata RLG00000034018
rosa_roxburghii Rroxscaffold_1G00039710
rosa_rugosa Rorug05G0189300
rosa_samantha Rh5AG274500 Rh5BG279800 Rh5CG311900 Rh5DG287800
rosa_wichuraiana Rw5G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 209
AfaI GTAC 1 cut(s) 406
AfiI CCNNNNNNNGG 1 cut(s) 270
AgeI ACCGGT 1 cut(s) 212
AluBI AGCT 4 cut(s) 520, 535, 548, 580
AluI AGCT 4 cut(s) 520, 535, 548, 580
Alw26I GTCTC 1 cut(s) 437
AoxI GGCC 2 cut(s) 151, 255
ApeKI GCWGC 2 cut(s) 577, 650
AsiGI ACCGGT 1 cut(s) 212
AspLEI GCGC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 452, 478
AxyI CCTNAGG 1 cut(s) 89
BanI GGYRCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 589, 637
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 2 cut(s) 47, 336
BisI GCNGC 2 cut(s) 578, 651
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 2 cut(s) 579, 652
BmiI GGNNCC 3 cut(s) 205, 211, 243
BpiI GAAGAC 1 cut(s) 603
Bpu1102I GCTNAGC 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 136, 246
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 3 cut(s) 149, 212, 525
Bse21I CCTNAGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 136, 246
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 3 cut(s) 38, 351, 540
BseRI GAGGAG 3 cut(s) 113, 146, 250
BseXI GCAGC 2 cut(s) 589, 637
BshFI GGCC 2 cut(s) 153, 257
BshNI GGYRCC 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 212
BsiSI CCGG 4 cut(s) 150, 207, 213, 526
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 437
BsnI GGCC 2 cut(s) 153, 257
Bso31I GGTCTC 1 cut(s) 437
Bsp143I GATC 2 cut(s) 448, 468
Bsp1720I GCTNAGC 1 cut(s) 521
BspANI GGCC 2 cut(s) 153, 257
BspCNI CTCAG 3 cut(s) 37, 352, 541
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 3 cut(s) 205, 211, 243
BspT107I GGYRCC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 437
BsrFI RCCGGY 3 cut(s) 149, 212, 525
BssAI RCCGGY 3 cut(s) 149, 212, 525
BssECI CCNNGG 2 cut(s) 136, 246
BssMI GATC 2 cut(s) 448, 468
Bst4CI ACNGT 2 cut(s) 304, 379
BstC8I GCNNGC 3 cut(s) 147, 151, 527
BstDEI CTNAG 5 cut(s) 24, 89, 360, 521, 549
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 2 cut(s) 451, 471
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 2 cut(s) 448, 468
BstMWI GCNNNNNNNGC 3 cut(s) 140, 526, 586
BstNSI RCATGY 1 cut(s) 634
BstV1I GCAGC 2 cut(s) 589, 637
BstV2I GAAGAC 1 cut(s) 603
BstXI CCANNNNNNTGG 2 cut(s) 238, 253
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 153, 257
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 147, 151, 527
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 3 cut(s) 149, 212, 525
Csp6I GTAC 1 cut(s) 405
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 4 cut(s) 452, 603, 617, 631
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 5 cut(s) 24, 89, 360, 521, 549
DpnI GATC 2 cut(s) 450, 470
DpnII GATC 2 cut(s) 448, 468
Eco31I GGTCTC 1 cut(s) 437
Eco81I CCTNAGG 1 cut(s) 89
FaeI CATG 4 cut(s) 455, 606, 620, 634
FalI AAGNNNNNCTT 2 cut(s) 82, 114
FatI CATG 4 cut(s) 451, 602, 616, 630
Fnu4HI GCNGC 2 cut(s) 578, 651
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 578, 651
FspBI CTAG 2 cut(s) 47, 336
GlaI GCGC 1 cut(s) 144
GluI GCNGC 2 cut(s) 578, 651
HaeIII GGCC 2 cut(s) 153, 257
HapII CCGG 4 cut(s) 150, 207, 213, 526
HhaI GCGC 1 cut(s) 145
Hin1II CATG 4 cut(s) 455, 606, 620, 634
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 3 cut(s) 28, 94, 599
HpaII CCGG 4 cut(s) 150, 207, 213, 526
HphI GGTGA 2 cut(s) 452, 478
Hpy166II GTNNAC 2 cut(s) 373, 405
Hpy188I TCNGA 5 cut(s) 27, 140, 184, 265, 361
Hpy188III TCNNGA 1 cut(s) 617
Hpy8I GTNNAC 2 cut(s) 373, 405
HpyAV CCTTC 3 cut(s) 325, 376, 645
HpyCH4III ACNGT 2 cut(s) 304, 379
HpyCH4V TGCA 4 cut(s) 68, 542, 589, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 526, 586
HpyF3I CTNAG 5 cut(s) 24, 89, 360, 521, 549
Hsp92II CATG 4 cut(s) 455, 606, 620, 634
HspAI GCGC 1 cut(s) 143
KroI GCCGGC 2 cut(s) 149, 525
KroNI GCCGGC 2 cut(s) 151, 527
Kzo9I GATC 2 cut(s) 448, 468
LmnI GCTCC 5 cut(s) 140, 209, 232, 316, 517
LpnPI CCDG 5 cut(s) 163, 220, 226, 249, 539
Lsp1109I GCAGC 2 cut(s) 589, 637
MaeI CTAG 2 cut(s) 47, 336
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 450, 470
MboI GATC 2 cut(s) 448, 468
MluCI AATT 4 cut(s) 178, 251, 643, 654
MlyI GAGTC 2 cut(s) 88, 593
MmeI TCCRAC 1 cut(s) 288
MroNI GCCGGC 2 cut(s) 149, 525
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 580
MspI CCGG 4 cut(s) 150, 207, 213, 526
MwoI GCNNNNNNNGC 3 cut(s) 140, 526, 586
NaeI GCCGGC 2 cut(s) 151, 527
NdeII GATC 2 cut(s) 448, 468
NgoMIV GCCGGC 2 cut(s) 149, 525
NlaIII CATG 4 cut(s) 455, 606, 620, 634
NlaIV GGNNCC 3 cut(s) 205, 211, 243
NspI RCATGY 1 cut(s) 634
PagI TCATGA 1 cut(s) 616
PdiI GCCGGC 2 cut(s) 151, 527
PfeI GAWTC 1 cut(s) 28
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 2 cut(s) 579, 652
PleI GAGTC 2 cut(s) 88, 593
PpsI GAGTC 2 cut(s) 88, 593
PsiI TTATAA 1 cut(s) 661
PspN4I GGNNCC 3 cut(s) 205, 211, 243
PvuII CAGCTG 1 cut(s) 580
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 578, 651
Sau3AI GATC 2 cut(s) 448, 468
SchI GAGTC 2 cut(s) 88, 593
Sse9I AATT 4 cut(s) 178, 251, 643, 654
SspI AATATT 1 cut(s) 613
SspMI CTAG 2 cut(s) 47, 336
TaaI ACNGT 2 cut(s) 304, 379
TaqII GACCGA 1 cut(s) 461
TasI AATT 4 cut(s) 178, 251, 643, 654
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 382
TseI GCWGC 2 cut(s) 577, 650
TspDTI ATGAA 4 cut(s) 30, 306, 418, 605
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 382
XceI RCATGY 1 cut(s) 634
XspI CTAG 2 cut(s) 47, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.