RLG00000034018

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016793
Physical Location & Seq
Reverse (-)
35426774 .. 35427430
657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034018

Sequence Viewer

Length: 657 bp
ATGAAGAACTGTGAAAAATCTCAAATCCTCATGCTTTCTCTGATAGCTATTCTTCTCATCGTCACACCTCTTTTATCCTCGTCAGTAAGAACTACCTATCTCTACATCATCACTAACCTCCTCATCATTGCCCTTGGAGCACAGGCCGGTGTTCTCAGAGCCTTTTCCAAGCCTATAGATCATGAGAAGAAGAACCCAGTTTCTGTTCCTCAAAAACCTGTGTTGGCGGTGCCCTCAGAATTAGCCTTTACTGAGAAAAGGGTTGCTGCCCAAAATGATGAAGATCAAAGGGTTACTTCGGAATGTTCCGAAAAGAATGGTGCTAATAAGGTTGTTGCAAAAAGCAAGTCTCAGAAGGTTACTGGCACTGTGAAAATGGAGAGTGTGAAAAAGTGTCCTTCCATGCCTAGCCTTTTCTTCATAGGTGGTGGTGAGACTGAGACTGAATTAGGAGCTCATAATGATGATGATGATGATGATGATGATGAGGTTGAGGACTTCCATCAACTAGAGGAGGAAGAAGATGTAGCAGATCTTAGTGGTCAAGAGCTTTTAATCAAAGCTGAGACTTTTATCGGGAACTTCTACAAGCAGTTGAAGATGCAGAGGGAAGAGTCATGGAAAAGGATTCATGGGATTTATCACAAAGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

219

Amino Acids

24.31

Weight (kDa)

5.14

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 187 - 215 1.3e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23270
malus_domestica MD03G1195800.v1.1 MD11G1212200.v1.1
prunus_persica Prupe.4G220200_v2.0.a1 Prupe.4G220300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040991
rosa_laevigata RLG00000034018
rosa_roxburghii Rroxscaffold_1G00039710
rosa_rugosa Rorug05G0189300
rosa_samantha Rh5AG274500 Rh5BG279800 Rh5CG311900 Rh5DG287800
rosa_wichuraiana Rw5G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 1 cut(s) 227
AgsI TTSAA 1 cut(s) 598
AluBI AGCT 4 cut(s) 47, 455, 550, 563
AluI AGCT 4 cut(s) 47, 455, 550, 563
Alw21I GWGCWC 2 cut(s) 142, 457
Alw26I GTCTC 4 cut(s) 354, 428, 434, 560
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 266
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AsuHPI GGTGA 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 2 cut(s) 142, 457
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 510
BcoDI GTCTC 4 cut(s) 354, 428, 434, 560
BfaI CTAG 2 cut(s) 408, 509
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 532
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 591
BmuI ACTGGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 197, 367
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 282
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 6 cut(s) 169, 243, 249, 365, 429, 555
BseNI ACTGG 2 cut(s) 197, 367
BseRI GAGGAG 2 cut(s) 110, 527
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 142, 457
BsiSI CCGG 1 cut(s) 147
BsmAI GTCTC 4 cut(s) 354, 428, 434, 560
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 3 cut(s) 142, 234, 457
Bsp143I GATC 3 cut(s) 178, 283, 532
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 6 cut(s) 168, 244, 248, 364, 430, 556
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 197, 367
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 178, 283, 532
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 11, 370
Bst6I CTCTTC 1 cut(s) 606
BstDEI CTNAG 7 cut(s) 155, 235, 252, 351, 438, 536, 564
BstKTI GATC 3 cut(s) 181, 286, 535
BstMAI GTCTC 4 cut(s) 354, 428, 434, 560
BstMBI GATC 3 cut(s) 178, 283, 532
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 146
CviAII CATG 5 cut(s) 31, 182, 403, 618, 632
DdeI CTNAG 7 cut(s) 155, 235, 252, 351, 438, 536, 564
DpnI GATC 3 cut(s) 180, 285, 534
DpnII GATC 3 cut(s) 178, 283, 532
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 455
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 5 cut(s) 34, 185, 406, 621, 635
FaiI YATR 8 cut(s) 32, 176, 183, 404, 422, 459, 619, 633
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 5 cut(s) 30, 181, 402, 617, 631
Fnu4HI GCNGC 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 408, 509
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 147
Hin1II CATG 5 cut(s) 34, 185, 406, 621, 635
HinfI GANTC 2 cut(s) 614, 628
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 6 cut(s) 42, 158, 238, 301, 310, 354
Hpy188III TCNNGA 3 cut(s) 182, 545, 577
HpyAV CCTTC 2 cut(s) 349, 408
HpyCH4III ACNGT 2 cut(s) 11, 370
HpyCH4V TGCA 2 cut(s) 338, 604
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 7 cut(s) 155, 235, 252, 351, 438, 536, 564
Hsp92II CATG 5 cut(s) 34, 185, 406, 621, 635
Kzo9I GATC 3 cut(s) 178, 283, 532
LmnI GCTCC 2 cut(s) 137, 452
LpnPI CCDG 5 cut(s) 128, 160, 210, 231, 348
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 591
MaeI CTAG 2 cut(s) 408, 509
MaeIII GTNAC 3 cut(s) 61, 292, 358
MalI GATC 3 cut(s) 180, 285, 534
MboI GATC 3 cut(s) 178, 283, 532
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 3 cut(s) 142, 234, 457
MluCI AATT 2 cut(s) 239, 446
MlyI GAGTC 1 cut(s) 623
MseI TTAA 1 cut(s) 554
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 3 cut(s) 178, 283, 532
NlaIII CATG 5 cut(s) 34, 185, 406, 621, 635
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 1 cut(s) 628
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Psp124BI GAGCTC 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 462
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 554
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 178, 283, 532
SchI GAGTC 1 cut(s) 623
SduI GDGCHC 3 cut(s) 142, 234, 457
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 2 cut(s) 239, 446
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 408, 509
SstI GAGCTC 1 cut(s) 457
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 11, 370
TasI AATT 2 cut(s) 239, 446
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 17, 294, 409, 620
TspRI CASTG 1 cut(s) 373
XspI CTAG 2 cut(s) 408, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.