Rw5G025860

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016793
Physical Location & Seq
Reverse (-)
37060794 .. 37061831
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025860.1

Sequence Viewer

Length: 645 bp
ATGAAGAACTGTGAAAAATCTCAAATCCTAATGCTTTCTCTGATAGCTATTCTTCTCATCGTCACACCTCTTTTATCCTCGTCAGTAAGAACTACCTATCTCTACATCATCACTAACCTCCTCATCATTTCCCTCGGAGCACAGGCCGGTGTTCTCAGAGCCTTTTCCAAGCCTATAGATCATGAGAAGAAGAACCCAGTTTCTGTTCCTCAAAAACCTGTGTTGGCGGTGCCCTCAGAATTAGCCTCTACTGAGAAAAGGCCTAGGGTTGCTGCCCAAAATGATGAAGATCAAAGGGTTGCTTCGGAATGTTCCGAAAAGAATGGTGCTAATAAGGTTGTTGCAAAAAGCAAGTCTCAGAAGGTTACTGGCACTGTGAAAATGGAGACCGTGAAGAAGTGTCCTTCCATGCCTAGCCTTTTCTTCATAGGTGGTGGTGAGGCTGAGACTGAAGGAGCTCAAAATGATGATGATGAAGTTGAGGACTTCTATCAACTAGAGGAGGATGAAGATGTAGCAGATCTTAGTGGTCAAGAGCTTTTAATCAAAGCTGAGACCTTCATCGGGAACTTCTACAAGCAGTTGAAGATGCAGAGGGAAGAGTCATGGAAAAGGATTCATGGGATTTATCACAAAGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

214

Amino Acids

23.79

Weight (kDa)

5.75

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 183 - 211 1.3e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23270
malus_domestica MD03G1195800.v1.1 MD11G1212200.v1.1
prunus_persica Prupe.4G220200_v2.0.a1 Prupe.4G220300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040991
rosa_laevigata RLG00000034018
rosa_roxburghii Rroxscaffold_1G00039710
rosa_rugosa Rorug05G0189300
rosa_samantha Rh5AG274500 Rh5BG279800 Rh5CG311900 Rh5DG287800
rosa_wichuraiana Rw5G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 471
AfiI CCNNNNNNNGG 1 cut(s) 564
AgsI TTSAA 1 cut(s) 586
AluBI AGCT 4 cut(s) 47, 458, 538, 551
AluI AGCT 4 cut(s) 47, 458, 538, 551
Alw21I GWGCWC 2 cut(s) 142, 460
Alw26I GTCTC 4 cut(s) 360, 380, 440, 548
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 144, 260
ApeKI GCWGC 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspA2I CCTAGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 449
AvrII CCTAGG 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 460
Bbv12I GWGCWC 2 cut(s) 142, 460
BbvI GCAGC 1 cut(s) 259
BcoDI GTCTC 4 cut(s) 360, 380, 440, 548
BfaI CTAG 3 cut(s) 264, 414, 497
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 520
BisI GCNGC 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 579
BmuI ACTGGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 2 cut(s) 380, 548
BsaJI CCNNGG 2 cut(s) 133, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 197, 373
Bse8I GATNNNNATC 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 133, 263
BseGI GGATG 1 cut(s) 511
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMII CTCAG 6 cut(s) 169, 243, 249, 371, 435, 543
BseNI ACTGG 2 cut(s) 197, 373
BseRI GAGGAG 2 cut(s) 110, 515
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 2 cut(s) 146, 262
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 142, 460
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 564
BsmAI GTCTC 4 cut(s) 360, 380, 440, 548
BsnI GGCC 2 cut(s) 146, 262
Bso31I GGTCTC 2 cut(s) 380, 548
Bsp1286I GDGCHC 3 cut(s) 142, 234, 460
Bsp143I GATC 3 cut(s) 178, 289, 520
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 146, 262
BspCNI CTCAG 6 cut(s) 168, 244, 248, 370, 436, 544
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 229
BspTNI GGTCTC 2 cut(s) 380, 548
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 197, 373
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 133, 263
BssMI GATC 3 cut(s) 178, 289, 520
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 3 cut(s) 11, 376, 391
Bst6I CTCTTC 1 cut(s) 594
BstDEI CTNAG 7 cut(s) 155, 235, 252, 357, 444, 524, 552
BstF5I GGATG 1 cut(s) 511
BstKTI GATC 3 cut(s) 181, 292, 523
BstMAI GTCTC 4 cut(s) 360, 380, 440, 548
BstMBI GATC 3 cut(s) 178, 289, 520
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 2 cut(s) 146, 262
BtsCI GGATG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 372
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 146
CviAII CATG 4 cut(s) 182, 409, 606, 620
DdeI CTNAG 7 cut(s) 155, 235, 252, 357, 444, 524, 552
DpnI GATC 3 cut(s) 180, 291, 522
DpnII GATC 3 cut(s) 178, 289, 520
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 263
Eco147I AGGCCT 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 460
Eco31I GGTCTC 2 cut(s) 380, 548
Eco53kI GAGCTC 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 4 cut(s) 185, 412, 609, 623
FaiI YATR 6 cut(s) 176, 183, 410, 428, 607, 621
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FatI CATG 4 cut(s) 181, 408, 605, 619
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 460
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 3 cut(s) 264, 414, 497
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 2 cut(s) 146, 262
HapII CCGG 1 cut(s) 147
Hin1II CATG 4 cut(s) 185, 412, 609, 623
HinfI GANTC 2 cut(s) 602, 616
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 449
Hpy188I TCNGA 7 cut(s) 42, 137, 158, 238, 307, 316, 360
Hpy188III TCNNGA 3 cut(s) 182, 533, 565
HpyAV CCTTC 4 cut(s) 355, 414, 446, 568
HpyCH4III ACNGT 3 cut(s) 11, 376, 391
HpyCH4V TGCA 2 cut(s) 344, 592
HpyF3I CTNAG 7 cut(s) 155, 235, 252, 357, 444, 524, 552
Hsp92II CATG 4 cut(s) 185, 412, 609, 623
Kzo9I GATC 3 cut(s) 178, 289, 520
LmnI GCTCC 2 cut(s) 137, 455
LpnPI CCDG 5 cut(s) 128, 160, 210, 231, 354
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 579
MaeI CTAG 3 cut(s) 264, 414, 497
MaeIII GTNAC 2 cut(s) 61, 364
MalI GATC 3 cut(s) 180, 291, 522
MboI GATC 3 cut(s) 178, 289, 520
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 3 cut(s) 142, 234, 460
MluCI AATT 1 cut(s) 239
MlyI GAGTC 1 cut(s) 611
MseI TTAA 1 cut(s) 542
MspI CCGG 1 cut(s) 147
NdeII GATC 3 cut(s) 178, 289, 520
NlaIII CATG 4 cut(s) 185, 412, 609, 623
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 181
PceI AGGCCT 1 cut(s) 262
PfeI GAWTC 1 cut(s) 616
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 520
SacI GAGCTC 1 cut(s) 460
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 3 cut(s) 178, 289, 520
SchI GAGTC 1 cut(s) 611
SduI GDGCHC 3 cut(s) 142, 234, 460
SfaNI GCATC 1 cut(s) 579
SfcI CTRYAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 1 cut(s) 227
SspMI CTAG 3 cut(s) 264, 414, 497
SstI GAGCTC 1 cut(s) 460
StuI AGGCCT 1 cut(s) 262
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 3 cut(s) 11, 376, 391
TasI AATT 1 cut(s) 239
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 7 cut(s) 17, 300, 415, 489, 522, 550, 608
TspRI CASTG 1 cut(s) 379
XmaJI CCTAGG 1 cut(s) 263
XspI CTAG 3 cut(s) 264, 414, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.