MD11G1212200.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016793
Physical Location & Seq
Forward (+)
30958510 .. 30959319
810 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1212200.v1.1.491

Sequence Viewer

Length: 810 bp
ATGAGCAAGACAATTCCATCTCTCTCTCTCTCTATAAATACGTCCCTAGGCTTTTACTTGTTCTCTACTACCATAAACCACATCCCTCTCACTCCTCTCATTCTTCGCACTTCATCCTTATTATTCCTATACTACCCGCACCACCTTTTCAGTCCCTCAGTAGACGCCATGAGCAAGCTTAATGAAAAATCTCAGATTCTTATGTTTTCTCTGCTAGTTTTTCTTCTCGTCCTTGCACCTTTGTTGTCCTCCTCACTAAGGACTCCTTACCTCTACATCATCACTAACCTCCTCATCATTGCTCTCGGAGCACAAGCCGGCGTCCTCTCATCCTTTTCCAAACTTGATTCAGACCATGACAAGAAGAACGGCTCTGGCGCCAGTTTTTCTTTTGCTCCCAAGCCTGTGGTTCCCACGGAGCTAGCCTCAGACGAAAAAAGGGTTGTTTCCCGTAATGATGAACATCAAACGGTTGTTGCTCCGCAATATGTCGAAAAGAAGGCTAGGGTTGTTGAGAAATCCAAGTCTGAGAAGATTGTGGACACTGTGAAAGTGGAGAGTGTGAAGAAGTGTACTTCTATGCCTAGCCTTTTCTTCATAGGGGGAGGTGAGACTTATCATGGAGATCACGAAGTGATCGAGGAAAAGCGTTACATTGAGGGAGAAGAAGAAGAAGTTTTCGAGGAGCTTAGTGGGCAAGAGCTGTTTGCCAAAGCTGAGAACTTTATTAGCAACTTCTACAAGCAGCTGAAGATGCAGAGGGAAGACTCATGGAAAAAGATTCATGAGTTTTATCACAAAGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

270

Amino Acids

30.41

Weight (kDa)

6.52

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 233 - 266 4e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23270
malus_domestica MD03G1195800.v1.1 MD11G1212200.v1.1
prunus_persica Prupe.4G220200_v2.0.a1 Prupe.4G220300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040991
rosa_laevigata RLG00000034018
rosa_roxburghii Rroxscaffold_1G00039710
rosa_rugosa Rorug05G0189300
rosa_samantha Rh5AG274500 Rh5BG279800 Rh5CG311900 Rh5DG287800
rosa_wichuraiana Rw5G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 162
AciI CCGC 2 cut(s) 137, 482
AcuI CTGAAG 1 cut(s) 770
AcyI GRCGYC 3 cut(s) 165, 321, 378
AdeI CACNNNGTG 1 cut(s) 634
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 1 cut(s) 258
AluBI AGCT 6 cut(s) 178, 421, 688, 703, 716, 748
AluI AGCT 6 cut(s) 178, 421, 688, 703, 716, 748
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 605
ApeKI GCWGC 1 cut(s) 745
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 620
AsuNHI GCTAGC 1 cut(s) 421
AvrII CCTAGG 1 cut(s) 46
BanI GGYRCC 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 757
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 605
BfaI CTAG 5 cut(s) 47, 215, 422, 504, 585
BfoI RGCGCY 1 cut(s) 381
BisI GCNGC 1 cut(s) 746
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 1 cut(s) 747
BmiI GGNNCC 2 cut(s) 379, 411
BmsI GCATC 1 cut(s) 744
BmtI GCTAGC 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 771
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 3 cut(s) 165, 321, 378
BsaJI CCNNGG 2 cut(s) 46, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 46, 414
BseGI GGATG 3 cut(s) 81, 113, 329
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 5 cut(s) 171, 206, 441, 519, 708
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 4 cut(s) 84, 241, 281, 698
BseXI GCAGC 1 cut(s) 757
BshNI GGYRCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 2 cut(s) 28, 138
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 605
BsmFI GGGAC 2 cut(s) 28, 138
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 625, 636
BspACI CCGC 2 cut(s) 137, 482
BspCNI CTCAG 5 cut(s) 170, 205, 440, 520, 709
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 379, 411
BspOI GCTAGC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 46, 414
BssMI GATC 2 cut(s) 625, 636
BssNI GRCGYC 3 cut(s) 165, 321, 378
BssT1I CCWWGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 472, 547
BstACI GRCGYC 3 cut(s) 165, 321, 378
BstC8I GCNNGC 3 cut(s) 176, 319, 423
BstDEI CTNAG 7 cut(s) 157, 192, 257, 427, 528, 689, 717
BstDSI CCRYGG 1 cut(s) 414
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 3 cut(s) 81, 113, 329
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 2 cut(s) 628, 639
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 2 cut(s) 625, 636
BstMWI GCNNNNNNNGC 3 cut(s) 308, 694, 754
BstV1I GCAGC 1 cut(s) 757
BstV2I GAAGAC 1 cut(s) 771
BstXI CCANNNNNNTGG 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 3 cut(s) 81, 113, 329
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 3 cut(s) 176, 319, 423
CciI TCATGA 1 cut(s) 784
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 317
CseI GACGC 2 cut(s) 173, 310
Csp6I GTAC 1 cut(s) 573
CviAII CATG 5 cut(s) 169, 356, 620, 771, 785
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 7 cut(s) 157, 192, 257, 427, 528, 689, 717
DinI GGCGCC 1 cut(s) 379
DpnI GATC 2 cut(s) 627, 638
DpnII GATC 2 cut(s) 625, 636
DraIII CACNNNGTG 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 770
EcoNI CCTNNNNNAGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 46
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 5 cut(s) 172, 359, 623, 774, 788
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 2 cut(s) 28, 138
FatI CATG 5 cut(s) 168, 355, 619, 770, 784
FauI CCCGC 1 cut(s) 144
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 746
FokI GGATG 3 cut(s) 68, 100, 316
Fsp4HI GCNGC 1 cut(s) 746
FspBI CTAG 5 cut(s) 47, 215, 422, 504, 585
GlaI GCGC 1 cut(s) 379
GluI GCNGC 1 cut(s) 746
HaeII RGCGCY 1 cut(s) 381
HapII CCGG 1 cut(s) 318
HgaI GACGC 2 cut(s) 173, 310
HhaI GCGC 1 cut(s) 380
Hin1I GRCGYC 3 cut(s) 165, 321, 378
Hin1II CATG 5 cut(s) 172, 359, 623, 774, 788
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 5 cut(s) 196, 262, 347, 767, 781
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 3 cut(s) 163, 541, 573
Hpy188I TCNGA 5 cut(s) 195, 308, 352, 430, 529
Hpy188III TCNNGA 2 cut(s) 629, 785
Hpy8I GTNNAC 3 cut(s) 163, 541, 573
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 2 cut(s) 472, 547
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 236, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 694, 754
HpyF3I CTNAG 7 cut(s) 157, 192, 257, 427, 528, 689, 717
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 3 cut(s) 165, 321, 378
Hsp92II CATG 5 cut(s) 172, 359, 623, 774, 788
HspAI GCGC 1 cut(s) 378
KasI GGCGCC 1 cut(s) 377
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Kzo9I GATC 2 cut(s) 625, 636
LmnI GCTCC 5 cut(s) 308, 400, 418, 484, 685
LpnPI CCDG 4 cut(s) 331, 360, 394, 417
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 1 cut(s) 744
MaeI CTAG 5 cut(s) 47, 215, 422, 504, 585
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 650
MalI GATC 2 cut(s) 627, 638
MboI GATC 2 cut(s) 625, 636
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 12
Mly113I GGCGCC 1 cut(s) 378
MlyI GAGTC 2 cut(s) 256, 761
MroNI GCCGGC 1 cut(s) 317
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 748
MspI CCGG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 308, 694, 754
NaeI GCCGGC 1 cut(s) 319
NarI GGCGCC 1 cut(s) 378
NdeII GATC 2 cut(s) 625, 636
NgoMIV GCCGGC 1 cut(s) 317
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 5 cut(s) 172, 359, 623, 774, 788
NlaIV GGNNCC 2 cut(s) 379, 411
PagI TCATGA 1 cut(s) 784
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdiI GCCGGC 1 cut(s) 319
PfeI GAWTC 3 cut(s) 196, 347, 781
PkrI GCNGC 1 cut(s) 747
PleI GAGTC 2 cut(s) 256, 761
PluTI GGCGCC 1 cut(s) 381
PpsI GAGTC 2 cut(s) 256, 761
PspN4I GGNNCC 2 cut(s) 379, 411
PvuII CAGCTG 1 cut(s) 748
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 746
Sau3AI GATC 2 cut(s) 625, 636
SchI GAGTC 2 cut(s) 256, 761
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 1 cut(s) 744
SfoI GGCGCC 1 cut(s) 379
Sse9I AATT 1 cut(s) 12
SsiI CCGC 2 cut(s) 137, 482
SspDI GGCGCC 1 cut(s) 377
SspMI CTAG 5 cut(s) 47, 215, 422, 504, 585
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 472, 547
TaiI ACGT 1 cut(s) 44
TaqI TCGA 3 cut(s) 492, 639, 681
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 572
TfiI GAWTC 3 cut(s) 196, 347, 781
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 550
TseI GCWGC 1 cut(s) 745
TspDTI ATGAA 5 cut(s) 102, 198, 474, 586, 773
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 1 cut(s) 550
XagI CCTNNNNNAGG 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 5 cut(s) 47, 215, 422, 504, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.