Prupe.4G220200_v2.0.a1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016793
Physical Location & Seq
Reverse (-)
13832644 .. 13833273
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G220200.1

Sequence Viewer

Length: 630 bp
ATGAACACCTTTGAAAAATCTCAGATTCTGTTGTTGTCTCTGCTAGCAATCCTTCTCACCATTGCACCTTTATTGTCCTCATCACTAAGGACTCCTTATCTCTATATCATCACTAACCTCGTCATTGTTGCCCTCGGAGCACAAGCTGGCCTTCTCTCAGCCTCTTCCAAGCCTTCAGATCATGACAAAAAGGAAGGTACGATTTCTGCTGCTCACAAACCTGTGATTGCCCCAGAATTAGCCTACTCCTCAGATAAATGGTTTCTTGCGCATAATGATGAAGATCAAAGGGTTGCTTCAAAATGTGCTCAAGAGAAACCTAAGGTGGTTGAGCTTGAGAAGTCCCTGTCTGAGAAGATTGTTGGCAGTGTGAAAATGGAGAGTGTGAAAAAGTGTCCTTCCATGCCTAGCCTTTTCTTCATAGGGGATGGTGAGGCTGATCAAGGAGATCTTGATGAGGTAACTGATTATAACCATGAAGTGGAGGAAGAAGAAGAAATAGTGGAGCTTAGTGGACCAGAGCTTTTTGCCAAAGCTGAGACCTTAATTGGGAACTTCTACAAGCAGTTGAAGATGCAGAGGGAAGAGTCATGGAAAAAGATTCATGGGTCTTATCAGAAAGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

210

Amino Acids

23.2

Weight (kDa)

5.13

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23270
malus_domestica MD03G1195800.v1.1 MD11G1212200.v1.1
prunus_persica Prupe.4G220200_v2.0.a1 Prupe.4G220300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040991
rosa_laevigata RLG00000034018
rosa_roxburghii Rroxscaffold_1G00039710
rosa_rugosa Rorug05G0189300
rosa_samantha Rh5AG274500 Rh5BG279800 Rh5CG311900 Rh5DG287800
rosa_wichuraiana Rw5G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
Acc16I TGCGCA 1 cut(s) 270
AccB7I CCANNNNNTGG 1 cut(s) 481
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 481, 549
AgsI TTSAA 3 cut(s) 14, 300, 571
AluBI AGCT 5 cut(s) 146, 334, 508, 523, 536
AluI AGCT 5 cut(s) 146, 334, 508, 523, 536
Alw21I GWGCWC 2 cut(s) 142, 310
Alw26I GTCTC 2 cut(s) 42, 533
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 623
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 515
AsuHPI GGTGA 2 cut(s) 49, 443
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 515
AxyI CCTNAGG 1 cut(s) 321
Bbv12I GWGCWC 2 cut(s) 142, 310
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 422
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 42, 533
BfaI CTAG 2 cut(s) 44, 408
BglII AGATCT 1 cut(s) 448
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 515
BmsI GCATC 1 cut(s) 564
BmtI GCTAGC 1 cut(s) 47
BpuEI CTTGAG 2 cut(s) 294, 356
BsaBI GATNNNNATC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 481, 549
Bse21I CCTNAGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 433
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 481, 549
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 5 cut(s) 35, 171, 264, 342, 528
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 142, 310
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 481, 549
BsmAI GTCTC 2 cut(s) 42, 533
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 142, 310
Bsp143I GATC 4 cut(s) 178, 283, 439, 448
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 5 cut(s) 34, 170, 263, 343, 529
BspHI TCATGA 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 4 cut(s) 178, 283, 439, 448
Bst6I CTCTTC 2 cut(s) 169, 579
BstC8I GCNNGC 2 cut(s) 45, 148
BstDEI CTNAG 8 cut(s) 21, 86, 157, 250, 321, 351, 509, 537
BstF5I GGATG 1 cut(s) 433
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 4 cut(s) 181, 286, 442, 451
BstMAI GTCTC 2 cut(s) 42, 533
BstMBI GATC 4 cut(s) 178, 283, 439, 448
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 2 cut(s) 45, 148
CaiI CAGNNNCTG 1 cut(s) 28
CciI TCATGA 1 cut(s) 181
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 198
CviAII CATG 5 cut(s) 182, 403, 476, 591, 605
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 8 cut(s) 21, 86, 157, 250, 321, 351, 509, 537
DpnI GATC 4 cut(s) 180, 285, 441, 450
DpnII GATC 4 cut(s) 178, 283, 439, 448
Eam1104I CTCTTC 2 cut(s) 169, 579
EarI CTCTTC 2 cut(s) 169, 579
Eco31I GGTCTC 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 321
FaeI CATG 5 cut(s) 185, 406, 479, 594, 608
FaiI YATR 9 cut(s) 105, 183, 273, 404, 422, 471, 477, 592, 606
FalI AAGNNNNNCTT 8 cut(s) 79, 111, 135, 167, 280, 312, 435, 467
FaqI GGGAC 1 cut(s) 328
FatI CATG 5 cut(s) 181, 402, 475, 590, 604
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 44, 408
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 150
HhaI GCGC 1 cut(s) 271
Hin1II CATG 5 cut(s) 185, 406, 479, 594, 608
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 4 cut(s) 25, 91, 587, 601
HphI GGTGA 2 cut(s) 49, 443
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 6 cut(s) 24, 137, 178, 253, 352, 618
Hpy188III TCNNGA 3 cut(s) 182, 311, 452
Hpy8I GTNNAC 1 cut(s) 515
HpyAV CCTTC 5 cut(s) 62, 161, 183, 188, 408
HpyCH4V TGCA 2 cut(s) 65, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 8 cut(s) 21, 86, 157, 250, 321, 351, 509, 537
Hsp92II CATG 5 cut(s) 185, 406, 479, 594, 608
HspAI GCGC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 4 cut(s) 178, 283, 439, 448
LmnI GCTCC 2 cut(s) 137, 505
LpnPI CCDG 5 cut(s) 132, 234, 246, 359, 531
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 564
MaeI CTAG 2 cut(s) 44, 408
MaeIII GTNAC 1 cut(s) 460
MalI GATC 4 cut(s) 180, 285, 441, 450
MboI GATC 4 cut(s) 178, 283, 439, 448
MboII GAAGA 9 cut(s) 156, 293, 367, 409, 500, 503, 506, 583, 596
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 142, 310
MluCI AATT 2 cut(s) 236, 546
MlyI GAGTC 2 cut(s) 85, 596
MnlI CCTC 9 cut(s) 88, 128, 143, 172, 259, 427, 451, 478, 573
MroXI GAANNNNTTC 1 cut(s) 623
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 4 cut(s) 178, 283, 439, 448
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 5 cut(s) 185, 406, 479, 594, 608
NsbI TGCGCA 1 cut(s) 270
PagI TCATGA 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 2 cut(s) 25, 601
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 2 cut(s) 85, 595
PpsI GAGTC 2 cut(s) 85, 595
PsiI TTATAA 1 cut(s) 471
PspPI GGNCC 1 cut(s) 515
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 4 cut(s) 178, 283, 439, 448
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 2 cut(s) 85, 596
SduI GDGCHC 2 cut(s) 142, 310
SfaNI GCATC 1 cut(s) 564
SinI GGWCC 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 309, 335
SmoI CTYRAG 2 cut(s) 309, 335
Sse9I AATT 2 cut(s) 236, 546
SspMI CTAG 2 cut(s) 44, 408
TasI AATT 2 cut(s) 236, 546
TfiI GAWTC 2 cut(s) 25, 601
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 1 cut(s) 373
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 5 cut(s) 17, 294, 409, 492, 593
TspRI CASTG 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 623
XspI CTAG 2 cut(s) 44, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.