Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005529

Physical Location & Seq

Genomic Coordinates Reverse (-)

16673813 .. 16678459

Gene Structure 4647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23590.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGGTTCCTTCAGAAAGTTCATGGCTTTTACTACTATGTTCACAGTTTTGTTACTTTATCTGATTCCTACAAAGGCCCAAGAAGAAGGATTCATATCTGCAGTTATATCGAGTAAAGGCCTCGACTTTACCAAGGACTTGCTGATAGAAGAGGCAATCTCCTCTATAATTCCACTTGAATTGCCTCAAATTGAAAAGTCTGTGAAAATCCCACTTATTGGTCAAGTTGATGTTGCCCTGTCCAATATCACAATATATAGTGTTGATATTGCCTCTTCATATGTGGAGACCGGTGACTCCGGCATTGCTTTGGTTGCTTCAGGAGCCACTGCAAATTTGAGTATGCATTGGCAGTACTCTTACACCACTTGGTTATTTGAAGTTACGGATAATGGGGCCGCCTCTATTCAGGTTGAAGGTATGGAAGTTGGTGTTACCTTAGCTTTGAAGGACCAACAAGGAAGTCTTAAGCTGTCTGTTTTGGATTGTGGATGCTATGTGAAGGATATTTCCATCAAGTTAGACGGTGGAGCATCTTGGCTTTACCAAGGGTTAGTGGATGCTTTTGGTGGGCAAATAGTTTCTGCAGTTGAAGAAAATATTGCCAAAAAAGTCGATGAGGGAATAATGAAGCTTGACTCGTCACTACAATCGCTTCCAAAGCAAATCGAGCTGGATGACATTGCTTCTTTGAATGTCACGTTGGTGGACAATCCTGTGCTTAGTAATTCTTCCATTGAATTTCAGATCAATGGTCTATTCACAACTCCTATTGATGATTCGACATCCAGCTTAGACCATAAAGGTTCATTAAATCCTCTTCCGCGCAGTGCTCCAGCTAGGATGGTTGAGATATCATTACATGAAGATGTCTTTAACTCGGTGTCCTTAGTCTATTTCAATGCAAACTATATGAACTGGATTATTAACAAAATACCAGATCAATCCCTGTTGAACACCGCTGAATGGAGATACATTGTTCCCCAACTGTACAAACAGTATCCAAACAAGGATATGGATCTTAATGTTACTGTATCTTCTCAACCAATCATTACAGTTGTGAACAACGGCATTGACATCATTGTTTACTCTGATGTGACAATTGATGTCATAGATGATGAAGTAATACCAGTTGCCTGCATATCAATGCACATTCATGCTTCATGTACTCCAGAGATCCTGAGGAGTAAACTATCTGGTATTGTTAAATTGAATGATTTTACCGCATCTTTGAAATGGAGCAAAATTGGTACCGTACACATGCATCTTGTTCAGGCAGTGTTGTCAACGGTCCTCAGAACTGTTGTCGTGCCTTATGTGAATTTATGGCTCTGGAAAGGACTACCTTTACCACTTCCGCATGGATTTACCCTTCATAATTCTGAAACCTTCTCCACCAATTCAAGGCTTACAGTATACAGTGATGTTGCGTTTCTAGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

482

Amino Acids

52.86

Weight (kDa)

4.7

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	40 - 209	2.7e-24	LBP / BPI / CETP family, N-terminal domain
LBP_BPI_CETP_C	PF02886	272 - 426	5e-21	LBP / BPI / CETP family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23590 FvH4_3g23590 FvH4_3g23590 FvH4_3g23590
malus_domestica	MD03G1192700.v1.1
prunus_persica	Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1
pyrus_communis	pycom03g14500
rosa_chinensis	RchiOBHm_Chr5g0041601
rosa_laevigata	RLG00000034085
rosa_multiflora	Rmu_co8479759.1_g000001 Rmu_sc0000861.1_g000013 Rmu_sc0011648.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029690 Rroxscaffold_1G00038880 Rroxscaffold_2G00117350 Rroxscaffold_2G00128820 Rroxscaffold_4G00323640
rosa_rugosa	Rorug05G0194000 Rorug05G0194000
rosa_samantha	Rh5AG279600 Rh5BG284200 Rh5BG285000 Rh5CG316900 Rh5DG293800
rosa_wichuraiana	Rw5G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1250
AccB1I	GGYRCC	1 cut(s)	1250
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	1416
AccII	CGCG	1 cut(s)	826
AciI	CCGC	5 cut(s)	399, 824, 960, 1224, 1358
AclWI	GGATC	2 cut(s)	1026, 1171
AcsI	RAATTY	3 cut(s)	334, 740, 1321
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	5 cut(s)	356, 992, 1168, 1252, 1257
AfiI	CCNNNNNNNGG	3 cut(s)	218, 966, 1404
AflII	CTTAAG	1 cut(s)	467
AgeI	ACCGGT	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AleI	CACNNNNGTG	1 cut(s)	704
AluBI	AGCT	6 cut(s)	443, 472, 634, 673, 792, 839
AluI	AGCT	6 cut(s)	443, 472, 634, 673, 792, 839
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	1026, 1171
AoxI	GGCC	3 cut(s)	75, 118, 396
ApoI	RAATTY	3 cut(s)	334, 740, 1321
AsiGI	ACCGGT	1 cut(s)	290
Asp718I	GGTACC	1 cut(s)	1250
AspLEI	GCGC	1 cut(s)	828
AspS9I	GGNCC	4 cut(s)	76, 396, 451, 1291
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	451, 1291
AxyI	CCTNAGG	1 cut(s)	1181
BanI	GGYRCC	1 cut(s)	1250
Bbv12I	GWGCWC	1 cut(s)	835
BccI	CCATC	2 cut(s)	521, 838
BceAI	ACGGC	1 cut(s)	1084
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciVI	GTATCC	1 cut(s)	1011
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	840, 1436
BfmI	CTRYAG	2 cut(s)	99, 585
BfrI	CTTAAG	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	1011
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	356
Bme18I	GGWCC	2 cut(s)	451, 1291
BmgT120I	GGNCC	4 cut(s)	76, 396, 451, 1291
BmiI	GGNNCC	4 cut(s)	7, 325, 397, 1252
BmsI	GCATC	5 cut(s)	482, 542, 550, 1235, 1273
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpmI	CTGGAG	2 cut(s)	819, 1155
Bpu10I	CCTNAGC	1 cut(s)	439
BsaBI	GATNNNNATC	2 cut(s)	94, 1017
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	132, 547
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 966, 1404
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	923, 1130
Bse21I	CCTNAGG	1 cut(s)	1181
Bse3DI	GCAATG	2 cut(s)	303, 681
Bse8I	GATNNNNATC	2 cut(s)	94, 1017
BseDI	CCNNGG	2 cut(s)	132, 547
BseGI	GGATG	5 cut(s)	497, 565, 682, 785, 849
BseJI	GATNNNNATC	2 cut(s)	94, 1017
BseLI	CCNNNNNNNGG	3 cut(s)	218, 966, 1404
BseMI	GCAATG	2 cut(s)	303, 681
BseMII	CTCAG	2 cut(s)	1172, 1309
BseNI	ACTGG	2 cut(s)	923, 1130
BseRI	GAGGAG	2 cut(s)	151, 1198
Bsh1236I	CGCG	1 cut(s)	826
BshFI	GGCC	3 cut(s)	77, 120, 398
BshNI	GGYRCC	1 cut(s)	1250
BshTI	ACCGGT	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	2 cut(s)	291, 300
BslI	CCNNNNNNNGG	3 cut(s)	218, 966, 1404
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	77, 120, 398
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	4 cut(s)	747, 940, 1018, 1176
BspACI	CCGC	5 cut(s)	399, 824, 960, 1224, 1358
BspANI	GGCC	3 cut(s)	77, 120, 398
BspCNI	CTCAG	2 cut(s)	1173, 1308
BspFNI	CGCG	1 cut(s)	826
BspLI	GGNNCC	4 cut(s)	7, 325, 397, 1252
BspMAI	CTGCAG	2 cut(s)	103, 589
BspPI	GGATC	2 cut(s)	1026, 1171
BspT107I	GGYRCC	1 cut(s)	1250
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	303, 681
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	2 cut(s)	923, 1130
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	132, 547
BssMI	GATC	4 cut(s)	747, 940, 1018, 1176
BssNAI	GTATAC	1 cut(s)	1417
BssT1I	CCWWGG	2 cut(s)	132, 547
Bst1107I	GTATAC	1 cut(s)	1417
Bst6I	CTCTTC	3 cut(s)	144, 280, 825
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	990
BstC8I	GCNNGC	1 cut(s)	1138
BstDEI	CTNAG	6 cut(s)	439, 722, 793, 889, 1181, 1295
BstF5I	GGATG	5 cut(s)	497, 565, 682, 785, 849
BstFNI	CGCG	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	4 cut(s)	750, 943, 1021, 1179
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	4 cut(s)	747, 940, 1018, 1176
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 323, 661, 670
BstNSI	RCATGY	1 cut(s)	1264
BstSFI	CTRYAG	2 cut(s)	99, 585
BstUI	CGCG	1 cut(s)	826
BstX2I	RGATCY	2 cut(s)	1018, 1176
BstYI	RGATCY	2 cut(s)	1018, 1176
BstZ17I	GTATAC	1 cut(s)	1417
Bsu36I	CCTNAGG	1 cut(s)	1181
BsuI	GTATCC	1 cut(s)	1011
BsuRI	GGCC	3 cut(s)	77, 120, 398
BtsCI	GGATG	5 cut(s)	497, 565, 682, 785, 849
BtsI	GCAGTG	3 cut(s)	327, 835, 1284
BtsIMutI	CAGTG	4 cut(s)	327, 835, 1284, 1426
Cac8I	GCNNGC	1 cut(s)	1138
CfoI	GCGC	1 cut(s)	828
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	76, 396, 451, 1291
Csp6I	GTAC	5 cut(s)	355, 991, 1167, 1251, 1256
CspAI	ACCGGT	1 cut(s)	290
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	6 cut(s)	22, 863, 1157, 1164, 1261, 1361
CviQI	GTAC	5 cut(s)	355, 991, 1167, 1251, 1256
DdeI	CTNAG	6 cut(s)	439, 722, 793, 889, 1181, 1295
DpnI	GATC	4 cut(s)	749, 942, 1020, 1178
DpnII	GATC	4 cut(s)	747, 940, 1018, 1176
Eam1104I	CTCTTC	3 cut(s)	144, 280, 825
EarI	CTCTTC	3 cut(s)	144, 280, 825
Eco130I	CCWWGG	2 cut(s)	132, 547
Eco147I	AGGCCT	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	855
Eco47I	GGWCC	2 cut(s)	451, 1291
Eco57I	CTGAAG	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	1181
EcoRV	GATATC	1 cut(s)	855
EcoT14I	CCWWGG	2 cut(s)	132, 547
EcoT22I	ATGCAT	2 cut(s)	348, 1266
ErhI	CCWWGG	2 cut(s)	132, 547
FaeI	CATG	6 cut(s)	25, 866, 1160, 1167, 1264, 1364
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	6 cut(s)	21, 862, 1156, 1163, 1260, 1360
FauNDI	CATATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	1416
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	5 cut(s)	504, 572, 689, 772, 856
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	840, 1436
GlaI	GCGC	1 cut(s)	827
GluI	GCNGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	819, 1155
HaeIII	GGCC	3 cut(s)	77, 120, 398
HapII	CCGG	2 cut(s)	291, 300
HhaI	GCGC	1 cut(s)	828
Hin1II	CATG	6 cut(s)	25, 866, 1160, 1167, 1264, 1364
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HincII	GTYRAC	1 cut(s)	1287
HindII	GTYRAC	1 cut(s)	1287
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	5 cut(s)	64, 90, 296, 638, 779
HpaII	CCGG	2 cut(s)	291, 300
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	8 cut(s)	42, 709, 1063, 1087, 1190, 1258, 1287, 1417
Hpy188I	TCNGA	6 cut(s)	14, 63, 747, 1093, 1298, 1384
Hpy188III	TCNNGA	5 cut(s)	321, 1172, 1180, 1333, 1436
Hpy8I	GTNNAC	8 cut(s)	42, 709, 1063, 1087, 1190, 1258, 1287, 1417
HpyAV	CCTTC	7 cut(s)	19, 80, 410, 442, 496, 1382, 1399
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	8 cut(s)	101, 332, 346, 587, 905, 1140, 1150, 1264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 323, 661, 670
HpyF3I	CTNAG	6 cut(s)	439, 722, 793, 889, 1181, 1295
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	6 cut(s)	25, 866, 1160, 1167, 1264, 1364
HspAI	GCGC	1 cut(s)	826
KpnI	GGTACC	1 cut(s)	1254
Kzo9I	GATC	4 cut(s)	747, 940, 1018, 1176
LmnI	GCTCC	4 cut(s)	323, 530, 838, 1239
LweI	GCATC	5 cut(s)	482, 542, 550, 1235, 1273
MaeI	CTAG	2 cut(s)	840, 1436
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	8 cut(s)	51, 293, 382, 433, 642, 697, 1027, 1096
MalI	GATC	4 cut(s)	749, 942, 1020, 1178
MboI	GATC	4 cut(s)	747, 940, 1018, 1176
MboII	GAAGA	8 cut(s)	95, 161, 267, 605, 723, 812, 878, 1029
MfeI	CAATTG	1 cut(s)	1101
MflI	RGATCY	2 cut(s)	1018, 1176
MhlI	GDGCHC	1 cut(s)	835
MlyI	GAGTC	2 cut(s)	290, 632
Mph1103I	ATGCAT	2 cut(s)	348, 1266
MseI	TTAA	6 cut(s)	468, 812, 876, 927, 1023, 1206
MslI	CAYNNNNRTG	4 cut(s)	704, 867, 1145, 1155
MspA1I	CMGCKG	1 cut(s)	962
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	2 cut(s)	291, 300
MunI	CAATTG	1 cut(s)	1101
MvnI	CGCG	1 cut(s)	826
MwoI	GCNNNNNNNGC	4 cut(s)	314, 323, 661, 670
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	4 cut(s)	747, 940, 1018, 1176
NlaIII	CATG	6 cut(s)	25, 866, 1160, 1167, 1264, 1364
NlaIV	GGNNCC	4 cut(s)	7, 325, 397, 1252
NmuCI	GTSAC	4 cut(s)	293, 642, 697, 1096
NsiI	ATGCAT	2 cut(s)	348, 1266
NspI	RCATGY	1 cut(s)	1264
OliI	CACNNNNGTG	1 cut(s)	704
PceI	AGGCCT	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	64, 90, 779
PflMI	CCANNNNNTGG	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	2 cut(s)	290, 632
PpsI	GAGTC	2 cut(s)	290, 632
PspN4I	GGNNCC	4 cut(s)	7, 325, 397, 1252
PspPI	GGNCC	4 cut(s)	76, 396, 451, 1291
PstI	CTGCAG	2 cut(s)	103, 589
PsuI	RGATCY	2 cut(s)	1018, 1176
RsaI	GTAC	5 cut(s)	356, 992, 1168, 1252, 1257
RsaNI	GTAC	5 cut(s)	355, 991, 1167, 1251, 1256
RseI	CAYNNNNRTG	4 cut(s)	704, 867, 1145, 1155
SaqAI	TTAA	6 cut(s)	468, 812, 876, 927, 1023, 1206
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	4 cut(s)	747, 940, 1018, 1176
Sau96I	GGNCC	4 cut(s)	76, 396, 451, 1291
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	2 cut(s)	290, 632
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	5 cut(s)	482, 542, 550, 1235, 1273
SfcI	CTRYAG	2 cut(s)	99, 585
SinI	GGWCC	2 cut(s)	451, 1291
SmiMI	CAYNNNNRTG	4 cut(s)	704, 867, 1145, 1155
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	5 cut(s)	399, 824, 960, 1224, 1358
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	840, 1436
StuI	AGGCCT	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	132, 547
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	5 cut(s)	110, 123, 615, 669, 782
TatI	WGTACW	3 cut(s)	354, 990, 1166
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	3 cut(s)	64, 90, 779
Tru1I	TTAA	6 cut(s)	468, 812, 876, 927, 1023, 1206
Tru9I	TTAA	6 cut(s)	468, 812, 876, 927, 1023, 1206
TscAI	CASTG	4 cut(s)	334, 835, 1284, 1426
TseFI	GTSAC	4 cut(s)	293, 642, 697, 1096
Tsp45I	GTSAC	4 cut(s)	293, 642, 697, 1096
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	4 cut(s)	334, 835, 1284, 1426
Van91I	CCANNNNNTGG	1 cut(s)	218
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	451, 1291
XapI	RAATTY	3 cut(s)	334, 740, 1321
XbaI	TCTAGA	1 cut(s)	1435
XceI	RCATGY	1 cut(s)	1264
XmiI	GTMKAC	1 cut(s)	1416
XspI	CTAG	2 cut(s)	840, 1436
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	2 cut(s)	348, 1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.