Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0005529

Physical Location & Seq

Genomic Coordinates Reverse (-)

49196 .. 52931

Gene Structure 3736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggaagttggtgttaccttagctttgaaggaccaacaaggaagtcttaagctgtctgttttggattgtggatgctatgtgaaggatatctccatcaagttagacggtggagcatcttggctttaccaagggatagtggatgctttcggtggacaaatagtttctgcagttgaagaaaatatttccaagaaagtcaaagaaggaataacgaagcttgattcgtcacttcaatcgcttccaaagcaaatcgagctggatgacattgctgctttgaatgtcactttggtggacaatcctgtactgagtaattcttccattgaatttcagatcaatggtctattcacaactcctattgatgattccacatccagcttagaccataaaggttcactagatcctcttccacgcagtgctccagctaagatggttgagatatcattgcatgaagatgtctttaactcggtgtccttgctctatttcaatgcaaactatatgaactggattattaacaaaataccagatcaatcccttttgaacactgctggatggagatacattattcctcgactgtacaagcagtatccaaacaaggatatggatcttaacattactgtatcttctcaaccaatcattacagttgtgaacaatggcattgacatcactgtttactctgatgtgacaattgatgtcatagacaatgaagttataccagttgcgtgcatatcgatgcacattcacgcttcatgtactccagagatcctgaggaataaactagctggtattgttaaattgaatgattttactgcatctttgaagtggagcaaaattggtgacctacacatgcgcctcgttcaggcagtgttgtcaacggtcctcaaaactgttatcatgccttatgtgaatttatggctctggaaaggactacctttaccacttccgcatggatttaagcttcagaattctgaaaccttctccaccaattcaaggcttacaatatacagtgatgttgaggcaagcggtcggttgacctccggtcttcgaaaggcaaaggaggagcaaacgcaatcctatctggttgcaaagatgttgacagtgagtgcttttaacaagaattcattcaaggggatgttccagtatgcgtgggttgtgaatggtcgctacaccattcaggaacacaacaattggttttcgttcacactctcggagtcttctgaccggagtcggatccgtggagcttcaactatgcgttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

417

Amino Acids

46.42

Weight (kDa)

6.4

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23590 FvH4_3g23590 FvH4_3g23590 FvH4_3g23590
malus_domestica	MD03G1192700.v1.1
prunus_persica	Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1
pyrus_communis	pycom03g14500
rosa_chinensis	RchiOBHm_Chr5g0041601
rosa_laevigata	RLG00000034085
rosa_multiflora	Rmu_co8479759.1_g000001 Rmu_sc0000861.1_g000013 Rmu_sc0011648.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029690 Rroxscaffold_1G00038880 Rroxscaffold_2G00117350 Rroxscaffold_2G00128820 Rroxscaffold_4G00323640
rosa_rugosa	Rorug05G0194000 Rorug05G0194000
rosa_samantha	Rh5AG279600 Rh5BG284200 Rh5BG285000 Rh5CG316900 Rh5DG293800
rosa_wichuraiana	Rw5G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	938, 1017
AclWI	GGATC	5 cut(s)	389, 606, 751, 1219, 1232
AcsI	RAATTY	4 cut(s)	320, 901, 958, 1111
AcuI	CTGAAG	1 cut(s)	938
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	3 cut(s)	300, 572, 748
AfiI	CCNNNNNNNGG	2 cut(s)	853, 984
AflII	CTTAAG	1 cut(s)	47
AhdI	GACNNNNNGTC	1 cut(s)	1032
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	9 cut(s)	23, 52, 214, 253, 372, 419, 776, 952, 1235
AluI	AGCT	9 cut(s)	23, 52, 214, 253, 372, 419, 776, 952, 1235
Alw21I	GWGCWC	1 cut(s)	415
AlwI	GGATC	5 cut(s)	389, 606, 751, 1219, 1232
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	4 cut(s)	320, 901, 958, 1111
Asp700I	GAANNNNTTC	1 cut(s)	1115
AspLEI	GCGC	1 cut(s)	846
AspS9I	GGNCC	2 cut(s)	31, 871
AsuHPI	GGTGA	1 cut(s)	842
AsuII	TTCGAA	1 cut(s)	1039
AvaII	GGWCC	2 cut(s)	31, 871
AxyI	CCTNAGG	1 cut(s)	761
BamHI	GGATCC	1 cut(s)	1224
BbsI	GAAGAC	2 cut(s)	1028, 1200
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	101, 418, 540
BciVI	GTATCC	1 cut(s)	591
BfaI	CTAG	2 cut(s)	392, 773
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	591
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	31, 871
BmeRI	GACNNNNNGTC	1 cut(s)	1032
BmgT120I	GGNCC	2 cut(s)	31, 871
BmiI	GGNNCC	1 cut(s)	1226
BmsI	GCATC	5 cut(s)	62, 122, 130, 717, 815
BoxI	GACNNNNGTC	1 cut(s)	1218
BpiI	GAAGAC	2 cut(s)	1028, 1200
BpmI	CTGGAG	2 cut(s)	399, 735
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	1039
Bsa29I	ATCGAT	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	127, 1228
BsaWI	WCCGGW	2 cut(s)	1031, 1215
Bsc4I	CCNNNNNNNGG	2 cut(s)	853, 984
Bse1I	ACTGG	3 cut(s)	503, 710, 1132
Bse21I	CCTNAGG	1 cut(s)	761
Bse3DI	GCAATG	2 cut(s)	261, 437
Bse8I	GATNNNNATC	1 cut(s)	597
BseCI	ATCGAT	1 cut(s)	725
BseDI	CCNNGG	2 cut(s)	127, 1228
BseGI	GGATG	6 cut(s)	77, 145, 262, 365, 551, 1131
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	2 cut(s)	853, 984
BseMI	GCAATG	2 cut(s)	261, 437
BseMII	CTCAG	2 cut(s)	293, 752
BseNI	ACTGG	3 cut(s)	503, 710, 1132
BseRI	GAGGAG	1 cut(s)	1067
BseXI	GCAGC	1 cut(s)	253
Bsh1285I	CGRYCG	1 cut(s)	1021
BshVI	ATCGAT	1 cut(s)	725
BsiEI	CGRYCG	1 cut(s)	1021
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	1032, 1216
BslI	CCNNNNNNNGG	2 cut(s)	853, 984
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	6 cut(s)	327, 394, 520, 598, 756, 1224
BspACI	CCGC	2 cut(s)	938, 1017
BspCNI	CTCAG	2 cut(s)	294, 753
BspDI	ATCGAT	1 cut(s)	725
BspLI	GGNNCC	1 cut(s)	1226
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	5 cut(s)	389, 606, 751, 1219, 1232
BspT104I	TTCGAA	1 cut(s)	1039
BspTI	CTTAAG	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	261, 437
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	3 cut(s)	503, 710, 1132
BssECI	CCNNGG	2 cut(s)	127, 1228
BssMI	GATC	6 cut(s)	327, 394, 520, 598, 756, 1224
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	9 cut(s)	107, 570, 613, 637, 664, 871, 883, 1001, 1093
Bst6I	CTCTTC	1 cut(s)	405
BstAFI	CTTAAG	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	570
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	2 cut(s)	718, 1015
BstDEI	CTNAG	5 cut(s)	19, 302, 373, 420, 761
BstDSI	CCRYGG	1 cut(s)	1228
BstEII	GGTNACC	1 cut(s)	830
BstENI	CCTNNNNNAGG	1 cut(s)	851
BstF5I	GGATG	6 cut(s)	77, 145, 262, 365, 551, 1131
BstHHI	GCGC	1 cut(s)	846
BstKTI	GATC	6 cut(s)	330, 397, 523, 601, 759, 1227
BstMBI	GATC	6 cut(s)	327, 394, 520, 598, 756, 1224
BstMCI	CGRYCG	1 cut(s)	1021
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 250
BstNSI	RCATGY	1 cut(s)	844
BstPAI	GACNNNNGTC	1 cut(s)	1218
BstPI	GGTNACC	1 cut(s)	830
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	2 cut(s)	1028, 1200
BstX2I	RGATCY	4 cut(s)	394, 598, 756, 1224
BstYI	RGATCY	4 cut(s)	394, 598, 756, 1224
Bsu15I	ATCGAT	1 cut(s)	725
Bsu36I	CCTNAGG	1 cut(s)	761
BsuI	GTATCC	1 cut(s)	591
BsuTUI	ATCGAT	1 cut(s)	725
BtgI	CCRYGG	1 cut(s)	1228
BtsCI	GGATG	6 cut(s)	77, 145, 262, 365, 551, 1131
BtsI	GCAGTG	3 cut(s)	415, 537, 864
BtsIMutI	CAGTG	6 cut(s)	415, 537, 660, 864, 1006, 1098
Cac8I	GCNNGC	2 cut(s)	718, 1015
CfoI	GCGC	1 cut(s)	846
Cfr13I	GGNCC	2 cut(s)	31, 871
ClaI	ATCGAT	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	299, 571, 747
CviAII	CATG	5 cut(s)	443, 744, 841, 889, 941
CviQI	GTAC	3 cut(s)	299, 571, 747
DdeI	CTNAG	5 cut(s)	19, 302, 373, 420, 761
DpnI	GATC	6 cut(s)	329, 396, 522, 600, 758, 1226
DpnII	GATC	6 cut(s)	327, 394, 520, 598, 756, 1224
DraIII	CACNNNGTG	1 cut(s)	410
DriI	GACNNNNNGTC	1 cut(s)	1032
Eam1104I	CTCTTC	1 cut(s)	405
Eam1105I	GACNNNNNGTC	1 cut(s)	1032
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	127
Eco32I	GATATC	2 cut(s)	88, 435
Eco47I	GGWCC	2 cut(s)	31, 871
Eco57I	CTGAAG	1 cut(s)	938
Eco81I	CCTNAGG	1 cut(s)	761
Eco91I	GGTNACC	1 cut(s)	830
EcoNI	CCTNNNNNAGG	1 cut(s)	851
EcoO65I	GGTNACC	1 cut(s)	830
EcoRI	GAATTC	2 cut(s)	958, 1111
EcoRV	GATATC	2 cut(s)	88, 435
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	5 cut(s)	446, 747, 844, 892, 944
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	5 cut(s)	442, 743, 840, 888, 940
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	6 cut(s)	84, 152, 269, 352, 558, 1138
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	392, 773
GlaI	GCGC	1 cut(s)	845
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	2 cut(s)	399, 735
HapII	CCGG	2 cut(s)	1032, 1216
HhaI	GCGC	1 cut(s)	846
Hin1II	CATG	5 cut(s)	446, 747, 844, 892, 944
Hin6I	GCGC	1 cut(s)	844
HinP1I	GCGC	1 cut(s)	844
HincII	GTYRAC	3 cut(s)	867, 1026, 1089
HindII	GTYRAC	3 cut(s)	867, 1026, 1089
HindIII	AAGCTT	2 cut(s)	212, 950
HinfI	GANTC	4 cut(s)	218, 359, 1205, 1219
HpaII	CCGG	2 cut(s)	1032, 1216
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	9 cut(s)	152, 289, 389, 643, 667, 867, 1026, 1089, 1194
Hpy188I	TCNGA	7 cut(s)	327, 673, 957, 964, 1204, 1213, 1224
Hpy188III	TCNNGA	4 cut(s)	752, 760, 913, 1169
Hpy8I	GTNNAC	9 cut(s)	152, 289, 389, 643, 667, 867, 1026, 1089, 1194
HpyAV	CCTTC	4 cut(s)	22, 76, 194, 979
HpyCH4III	ACNGT	9 cut(s)	107, 570, 613, 637, 664, 871, 883, 1001, 1093
HpyCH4V	TGCA	7 cut(s)	167, 442, 485, 720, 730, 806, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 250
HpyF3I	CTNAG	5 cut(s)	19, 302, 373, 420, 761
Hsp92II	CATG	5 cut(s)	446, 747, 844, 892, 944
HspAI	GCGC	1 cut(s)	844
Kzo9I	GATC	6 cut(s)	327, 394, 520, 598, 756, 1224
LmnI	GCTCC	5 cut(s)	110, 418, 819, 1054, 1232
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	5 cut(s)	62, 122, 130, 717, 815
MaeI	CTAG	2 cut(s)	392, 773
MaeIII	GTNAC	5 cut(s)	13, 222, 277, 676, 830
MalI	GATC	6 cut(s)	329, 396, 522, 600, 758, 1226
MboI	GATC	6 cut(s)	327, 394, 520, 598, 756, 1224
MboII	GAAGA	7 cut(s)	185, 303, 392, 458, 609, 1028, 1200
MfeI	CAATTG	2 cut(s)	681, 1180
MflI	RGATCY	4 cut(s)	394, 598, 756, 1224
MhlI	GDGCHC	1 cut(s)	415
MlyI	GAGTC	2 cut(s)	1214, 1228
MmeI	TCCRAC	1 cut(s)	1202
MnlI	CCTC	8 cut(s)	408, 573, 756, 857, 884, 1003, 1039, 1045
MroXI	GAANNNNTTC	1 cut(s)	1115
MseI	TTAA	8 cut(s)	48, 456, 507, 603, 786, 948, 1104, 1252
MslI	CAYNNNNRTG	3 cut(s)	284, 447, 725
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	2 cut(s)	1032, 1216
MunI	CAATTG	2 cut(s)	681, 1180
MwoI	GCNNNNNNNGC	2 cut(s)	241, 250
NdeII	GATC	6 cut(s)	327, 394, 520, 598, 756, 1224
NlaIII	CATG	5 cut(s)	446, 747, 844, 892, 944
NlaIV	GGNNCC	1 cut(s)	1226
NmuCI	GTSAC	4 cut(s)	222, 277, 676, 830
NspI	RCATGY	1 cut(s)	844
NspV	TTCGAA	1 cut(s)	1039
OliI	CACNNNNGTG	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	1115
PfeI	GAWTC	2 cut(s)	218, 359
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	1213, 1227
PpsI	GAGTC	2 cut(s)	1213, 1227
PshAI	GACNNNNGTC	1 cut(s)	1218
PspEI	GGTNACC	1 cut(s)	830
PspN4I	GGNNCC	1 cut(s)	1226
PspPI	GGNCC	2 cut(s)	31, 871
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	4 cut(s)	394, 598, 756, 1224
RsaI	GTAC	3 cut(s)	300, 572, 748
RsaNI	GTAC	3 cut(s)	299, 571, 747
RseI	CAYNNNNRTG	3 cut(s)	284, 447, 725
SaqAI	TTAA	8 cut(s)	48, 456, 507, 603, 786, 948, 1104, 1252
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	6 cut(s)	327, 394, 520, 598, 756, 1224
Sau96I	GGNCC	2 cut(s)	31, 871
SchI	GAGTC	2 cut(s)	1214, 1228
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	5 cut(s)	62, 122, 130, 717, 815
SfcI	CTRYAG	1 cut(s)	165
SfuI	TTCGAA	1 cut(s)	1039
SinI	GGWCC	2 cut(s)	31, 871
SmiMI	CAYNNNNRTG	3 cut(s)	284, 447, 725
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	2 cut(s)	938, 1017
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	392, 773
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	9 cut(s)	107, 570, 613, 637, 664, 871, 883, 1001, 1093
TaqI	TCGA	4 cut(s)	249, 565, 725, 1039
TatI	WGTACW	3 cut(s)	298, 570, 746
TfiI	GAWTC	2 cut(s)	218, 359
Tru1I	TTAA	8 cut(s)	48, 456, 507, 603, 786, 948, 1104, 1252
Tru9I	TTAA	8 cut(s)	48, 456, 507, 603, 786, 948, 1104, 1252
TscAI	CASTG	6 cut(s)	415, 544, 667, 864, 1006, 1098
TseFI	GTSAC	4 cut(s)	222, 277, 676, 830
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	4 cut(s)	222, 277, 676, 830
TspDTI	ATGAA	5 cut(s)	459, 509, 714, 732, 1104
TspGWI	ACGGA	1 cut(s)	1217
TspRI	CASTG	6 cut(s)	415, 544, 667, 864, 1006, 1098
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	31, 871
XagI	CCTNNNNNAGG	1 cut(s)	851
XapI	RAATTY	4 cut(s)	320, 901, 958, 1111
XceI	RCATGY	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	1115
XspI	CTAG	2 cut(s)	392, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.