Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005529

Physical Location & Seq

Genomic Coordinates Forward (+)

26426408 .. 26430744

Gene Structure 4337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1192700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGGTTCCTTCCCAAAGTCGATGAAATCTGCAATTTTCTTCATAATTTCATCACTTTTTCTGGTTTCTACAACTACCCAGGAAGAAGGATTCATATCTGTGGTCGTATCCAGAAAGGGTCTTGATTTCACCAAGGACTTGCTGATAGAACAGGCTGTTTCCTCCATAATCCCCCTTAAGCTGCCCGAAATAAAAAAGTCGATCAAAATCCCACTTGTTGGCAAAGTTCATATTGTTCTGTCGAATATCTTAATTTACAATGTGGAAATTGGCTCTTCATATGTGGAGACTGGTGACTCTGGTATTGCTTTAATTGCTTCAGGAGCCACTGCAAATTTGAGCATGGATTGGAAGTATACTTATAGCACTTGGTTATTTGATATTTCAGATAGTGGGGATGCCTCCATTCAGGTTGAAGGTATGGAAGTGGGTGTTACCTTAGCTTTGAAGGACCAAGAAGGAACCCTTAAGCTGTCTGTTTTGGAATGCGGTTGCTATGTGAAAGATATCACCATTAAGTTAGATGGTGGAGCATCTTGGCTTTACCAAGGATTAGTGGATGCCTTTAAAGGCCAAATAATTTCTGCAGTTGAAGATAATATTTCCAATAAAGTCAGAGAAGGAATAGTGAAGCTTGACAGTTTACTACAATCGCTTCCAAAACAAATTGCACTGGATGATATTGCAGCTTTGAATGTTACATTTGTGGGCAATCCTGTGTTGAGTAATTCTTCCATTGAATTTCAGATAAATGGTCTTTTCACGGCTCGTGATGATAATTCCGCTTCCAGCTTATACAATAAAGGTTCACTAGATCCTGTTCCCTGCAATGCTCCAGCTAAGATGGTTGAGATATCATTACATGAAAATGTCTTTAGCTCAGTGTCCTTAGTTTTCTACAACGAAAATTATATGCAACGGACAATCAACAAGATACCAGATCAGTCCCTTCTGAACACTGCTCAGTGGAAACACATTGTTCCTCAACTGTACAAGCAGTACCCAGATAAAGATATGGAACTTAATATTTCTGTATCTTCTCCACCAATAATAAGAGTTGCGAACAATGGCGTTGACTTCACTGTTTACTCTGATGTGACAATTGGTGTTGTGGAGGATGATGATGAAGTAATATCAGTTGCGTGCATATCATTGGAGATTCATGCTTCATGTTCCCCAAAGATCTCGAGGAACAAACTAGCTGGCATTGTTAAATTGAATGATATTACAGCTTCTTTGAAGTGGAGTGAAATTGGTAACCTACACATGCGTCTCGTTCAGGCCATATTGTCAACAATCCTCAAAACTGTTGTTGTGCCGTATTTGAATTTATACCTTTGGAAAGGACTACCTTTACCACTTCCTCGTGGCTTTACACTCAAGAATTCTGAGATCCTCTCCACCAATTCAAGACTTAGAATATTCAGCGATGTTGAGTTTGTAGAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

484

Amino Acids

52.94

Weight (kDa)

5.11

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	40 - 210	6.6e-24	LBP / BPI / CETP family, N-terminal domain
LBP_BPI_CETP_C	PF02886	250 - 479	2.3e-34	LBP / BPI / CETP family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23590 FvH4_3g23590 FvH4_3g23590 FvH4_3g23590
malus_domestica	MD03G1192700.v1.1
prunus_persica	Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1
pyrus_communis	pycom03g14500
rosa_chinensis	RchiOBHm_Chr5g0041601
rosa_laevigata	RLG00000034085
rosa_multiflora	Rmu_co8479759.1_g000001 Rmu_sc0000861.1_g000013 Rmu_sc0011648.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029690 Rroxscaffold_1G00038880 Rroxscaffold_2G00117350 Rroxscaffold_2G00128820 Rroxscaffold_4G00323640
rosa_rugosa	Rorug05G0194000 Rorug05G0194000
rosa_samantha	Rh5AG279600 Rh5BG284200 Rh5BG285000 Rh5CG316900 Rh5DG293800
rosa_wichuraiana	Rw5G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	356
AciI	CCGC	2 cut(s)	489, 783
AclWI	GGATC	2 cut(s)	809, 1387
AcsI	RAATTY	4 cut(s)	334, 740, 1327, 1384
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	992, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflII	CTTAAG	2 cut(s)	176, 467
AgsI	TTSAA	9 cut(s)	416, 448, 593, 694, 740, 1219, 1240, 1327, 1410
AjnI	CCWGG	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	281, 1277
AlwI	GGATC	2 cut(s)	809, 1387
Ama87I	CYCGRG	1 cut(s)	1186
AoxI	GGCC	2 cut(s)	571, 1281
ApeKI	GCWGC	2 cut(s)	181, 686
ApoI	RAATTY	4 cut(s)	334, 740, 1327, 1384
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	121, 305, 502
AvaI	CYCGRG	1 cut(s)	1186
AvaII	GGWCC	1 cut(s)	451
BauI	CACGAG	2 cut(s)	768, 1365
BbvI	GCAGC	2 cut(s)	168, 698
BccI	CCATC	2 cut(s)	518, 838
BceAI	ACGGC	2 cut(s)	780, 1303
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	281, 1277
BfaI	CTAG	2 cut(s)	812, 1199
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	2 cut(s)	176, 467
BfuI	GTATCC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	1182
BisI	GCNGC	2 cut(s)	182, 687
BlsI	GCNGC	2 cut(s)	183, 688
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	1186
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	3 cut(s)	7, 325, 463
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	388, 542, 550
BplI	GAGNNNNNCTC	2 cut(s)	1382, 1414
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	1364
BsaBI	GATNNNNATC	2 cut(s)	94, 206
BsaJI	CCNNGG	3 cut(s)	78, 132, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	295, 678
Bse3DI	GCAATG	1 cut(s)	835
Bse8I	GATNNNNATC	2 cut(s)	94, 206
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	78, 132, 547
BseGI	GGATG	4 cut(s)	403, 565, 682, 1123
BseJI	GATNNNNATC	2 cut(s)	94, 206
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	3 cut(s)	894, 977, 1380
BseNI	ACTGG	2 cut(s)	295, 678
BseXI	GCAGC	2 cut(s)	168, 698
BshFI	GGCC	2 cut(s)	573, 1283
BsiHKCI	CYCGRG	1 cut(s)	1186
BslFI	GGGAC	1 cut(s)	931
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	281, 1277
BsmBI	CGTCTC	1 cut(s)	1277
BsmFI	GGGAC	1 cut(s)	931
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	573, 1283
BsoBI	CYCGRG	1 cut(s)	1186
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	5 cut(s)	201, 814, 940, 1182, 1392
BspACI	CCGC	2 cut(s)	489, 783
BspANI	GGCC	2 cut(s)	573, 1283
BspCNI	CTCAG	3 cut(s)	893, 976, 1381
BspLI	GGNNCC	3 cut(s)	7, 325, 463
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	2 cut(s)	809, 1387
BspQI	GCTCTTC	1 cut(s)	280
BspTI	CTTAAG	2 cut(s)	176, 467
BsrDI	GCAATG	1 cut(s)	835
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	2 cut(s)	295, 678
BssECI	CCNNGG	3 cut(s)	78, 132, 547
BssMI	GATC	5 cut(s)	201, 814, 940, 1182, 1392
BssNAI	GTATAC	1 cut(s)	357
BssSI	CACGAG	2 cut(s)	768, 1365
BssT1I	CCWWGG	2 cut(s)	132, 547
Bst1107I	GTATAC	1 cut(s)	357
Bst2BI	CACGAG	2 cut(s)	768, 1365
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	4 cut(s)	641, 990, 1084, 1309
Bst6I	CTCTTC	1 cut(s)	280
BstAFI	CTTAAG	2 cut(s)	176, 467
BstAUI	TGTACA	1 cut(s)	990
BstC8I	GCNNGC	2 cut(s)	1144, 1204
BstDEI	CTNAG	7 cut(s)	439, 840, 880, 889, 963, 1389, 1415
BstEII	GGTNACC	1 cut(s)	1256
BstF5I	GGATG	4 cut(s)	403, 565, 682, 1123
BstKTI	GATC	5 cut(s)	204, 817, 943, 1185, 1395
BstMAI	GTCTC	2 cut(s)	281, 1277
BstMBI	GATC	5 cut(s)	201, 814, 940, 1182, 1392
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 323
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	1270
BstPI	GGTNACC	1 cut(s)	1256
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	168, 698
BstX2I	RGATCY	3 cut(s)	814, 1182, 1392
BstYI	RGATCY	3 cut(s)	814, 1182, 1392
BstZ17I	GTATAC	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	573, 1283
BtgZI	GCGATG	1 cut(s)	1443
BtsCI	GGATG	4 cut(s)	403, 565, 682, 1123
BtsI	GCAGTG	2 cut(s)	327, 957
BtsIMutI	CAGTG	6 cut(s)	327, 671, 888, 957, 971, 1080
Cac8I	GCNNGC	2 cut(s)	1144, 1204
Cfr13I	GGNCC	1 cut(s)	451
CseI	GACGC	1 cut(s)	1259
Csp6I	GTAC	2 cut(s)	991, 1000
CviAII	CATG	5 cut(s)	343, 863, 1163, 1170, 1267
CviQI	GTAC	2 cut(s)	991, 1000
DdeI	CTNAG	7 cut(s)	439, 840, 880, 889, 963, 1389, 1415
DpnI	GATC	5 cut(s)	203, 816, 942, 1184, 1394
DpnII	GATC	5 cut(s)	201, 814, 940, 1182, 1392
DraI	TTTAAA	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	2 cut(s)	132, 547
Eco32I	GATATC	2 cut(s)	508, 855
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	1186
Eco91I	GGTNACC	1 cut(s)	1256
EcoO65I	GGTNACC	1 cut(s)	1256
EcoRI	GAATTC	1 cut(s)	1384
EcoRII	CCWGG	1 cut(s)	78
EcoRV	GATATC	2 cut(s)	508, 855
EcoT14I	CCWWGG	2 cut(s)	132, 547
ErhI	CCWWGG	2 cut(s)	132, 547
Esp3I	CGTCTC	1 cut(s)	1277
FaeI	CATG	5 cut(s)	346, 866, 1166, 1173, 1270
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	931
FatI	CATG	5 cut(s)	342, 862, 1162, 1169, 1266
FauNDI	CATATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	182, 687
FokI	GGATG	4 cut(s)	410, 572, 689, 1130
Fsp4HI	GCNGC	2 cut(s)	182, 687
FspBI	CTAG	2 cut(s)	812, 1199
GluI	GCNGC	2 cut(s)	182, 687
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	573, 1283
HgaI	GACGC	1 cut(s)	1259
Hin1II	CATG	5 cut(s)	346, 866, 1166, 1173, 1270
HincII	GTYRAC	2 cut(s)	1075, 1293
HindII	GTYRAC	2 cut(s)	1075, 1293
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	3 cut(s)	90, 296, 1159
HphI	GGTGA	3 cut(s)	121, 305, 502
Hpy166II	GTNNAC	6 cut(s)	357, 644, 809, 1075, 1087, 1293
Hpy188I	TCNGA	6 cut(s)	388, 617, 747, 954, 1093, 1390
Hpy188III	TCNNGA	7 cut(s)	111, 122, 321, 770, 1186, 1381, 1410
Hpy8I	GTNNAC	6 cut(s)	357, 644, 809, 1075, 1087, 1293
HpyAV	CCTTC	8 cut(s)	19, 80, 410, 442, 452, 614, 959, 1439
HpyCH4III	ACNGT	4 cut(s)	641, 990, 1084, 1309
HpyCH4V	TGCA	8 cut(s)	32, 332, 587, 671, 686, 828, 916, 1146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 323
HpyF3I	CTNAG	7 cut(s)	439, 840, 880, 889, 963, 1389, 1415
Hsp92II	CATG	5 cut(s)	346, 866, 1166, 1173, 1270
Kzo9I	GATC	5 cut(s)	201, 814, 940, 1182, 1392
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	3 cut(s)	323, 530, 838
Lsp1109I	GCAGC	2 cut(s)	168, 698
LweI	GCATC	3 cut(s)	388, 542, 550
MaeI	CTAG	2 cut(s)	812, 1199
MaeIII	GTNAC	5 cut(s)	293, 433, 697, 1096, 1256
MalI	GATC	5 cut(s)	203, 816, 942, 1184, 1394
MboI	GATC	5 cut(s)	201, 814, 940, 1182, 1392
MboII	GAAGA	6 cut(s)	31, 95, 267, 605, 723, 1029
MfeI	CAATTG	1 cut(s)	1101
MflI	RGATCY	3 cut(s)	814, 1182, 1392
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	8 cut(s)	172, 412, 993, 1108, 1182, 1310, 1374, 1406
MseI	TTAA	8 cut(s)	177, 251, 311, 468, 516, 567, 1023, 1212
MslI	CAYNNNNRTG	2 cut(s)	98, 867
MspCI	CTTAAG	2 cut(s)	176, 467
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	1101
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	314, 323
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	5 cut(s)	201, 814, 940, 1182, 1392
NlaIII	CATG	5 cut(s)	346, 866, 1166, 1173, 1270
NlaIV	GGNNCC	3 cut(s)	7, 325, 463
NmuCI	GTSAC	2 cut(s)	293, 1096
NspI	RCATGY	1 cut(s)	1270
PaeR7I	CTCGAG	1 cut(s)	1186
PciSI	GCTCTTC	1 cut(s)	280
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	90, 1159
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	183, 688
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	1256
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	7, 325, 463
PspPI	GGNCC	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	3 cut(s)	814, 1182, 1392
RsaI	GTAC	2 cut(s)	992, 1001
RsaNI	GTAC	2 cut(s)	991, 1000
RseI	CAYNNNNRTG	2 cut(s)	98, 867
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	8 cut(s)	177, 251, 311, 468, 516, 567, 1023, 1212
SatI	GCNGC	2 cut(s)	182, 687
Sau3AI	GATC	5 cut(s)	201, 814, 940, 1182, 1392
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	80
SfaNI	GCATC	3 cut(s)	388, 542, 550
SfcI	CTRYAG	1 cut(s)	585
Sfr274I	CTCGAG	1 cut(s)	1186
SinI	GGWCC	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	1186
SmiMI	CAYNNNNRTG	2 cut(s)	98, 867
SmlI	CTYRAG	4 cut(s)	176, 467, 1186, 1379
SmoI	CTYRAG	4 cut(s)	176, 467, 1186, 1379
SsiI	CCGC	2 cut(s)	489, 783
SspI	AATATT	3 cut(s)	601, 1027, 1422
SspMI	CTAG	2 cut(s)	812, 1199
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	132, 547
TaaI	ACNGT	4 cut(s)	641, 990, 1084, 1309
TaqI	TCGA	4 cut(s)	20, 200, 242, 1187
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	2 cut(s)	90, 1159
Tru1I	TTAA	8 cut(s)	177, 251, 311, 468, 516, 567, 1023, 1212
Tru9I	TTAA	8 cut(s)	177, 251, 311, 468, 516, 567, 1023, 1212
TscAI	CASTG	6 cut(s)	334, 678, 888, 964, 971, 1087
TseFI	GTSAC	2 cut(s)	293, 1096
TseI	GCWGC	2 cut(s)	181, 686
Tsp45I	GTSAC	2 cut(s)	293, 1096
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	6 cut(s)	334, 678, 888, 964, 971, 1087
Van91I	CCANNNNNTGG	1 cut(s)	218
Vha464I	CTTAAG	2 cut(s)	176, 467
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	4 cut(s)	334, 740, 1327, 1384
XceI	RCATGY	1 cut(s)	1270
XhoI	CTCGAG	1 cut(s)	1186
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	2 cut(s)	812, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.