Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005529

Physical Location & Seq

Genomic Coordinates Forward (+)

45076879 .. 45079986

Gene Structure 3108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGGTTCCTTTAGAAAGTTCATGGCTTTTACTACTTTCTTCAAAATTTTATTACTTTATCTGATTCCTACGAAGGCCCAAGAAGAAGGATTCATATCTGCAGTTATATCAAGTAAAGGTCTTGACTTTACCAAGGACTTGCTGATACAAGAGGCAATTTCTTCTATAATTCCACTCCAATTGCCTCAAATTGAAAAGTCTGTGAAAATCCCTCTTATCGGTCAAGTTGATGTTGCTCTGTCCAATATCACAATATATAGTGTTGATATTGCTTCTTCATATGTGGAGACTGGGGACTCCGGTATTGCTTTGGTTGCTTCAGGAGCCACTGCAAATTTGAGTATGCATTGGCAGTACTCTTATACTACGTGGTTGTTTGAAGTTTCGGATAATGGGGCCGCCTTTATTCAGGTTGAAGGTATGGAAGTTGGTGTTACCTTAGCTTTGAAGGACCAACAAGGAAGTCTTAAGCTGTCCGTTTTGGATTGTGGATGCTATGTTAAGGATATCTCCATCAAGTTAGACGGTGGAGCATCTTGGCTTTACCAAGGGATAGTGGATGCTTTTGGTGGACAAATAGTTTCTGCAGTTGAAGAAAATATTTCCAAGAAAGTCAAAGAAGGAATAACGAAGCTTGATTCGTCACTTCAATCGCTTCCAAAGCAAATCGAGCTGGATGACATTGCTGCTTTGAATGTCACTTTGGTGGACAATCCTGTGCTGAGTAATTCTTCCATTGAATTTCAGATCAATGGTCTATTCACAGCTCCTATTGATGATTCCATATCCAACTTAGACCATAAAGGTTCACTAGATCCTCTTCCACGCAGTGCTCCAGCTAAGATGGTTGACATATCATTGCATGAAGATGTCTTTAACTCGGTGTCCTTGGTCTATTTCAATGCAAACTATATGAACTGGATTATTAACAAAATACCAGATCAATCCCTTTTGAACACTGCTGGATGGAGATACATTATTCCTCGACTGTACAAGCAATATCCAAACAAGGATATGGATCTTAATGTTACTGTATCTTCTCAACCGATCATTACAGTTGTGAACAATGGCATTGACATCACTGTTTACTCTGATGTGACAATTGATGTCATAGACAATGAAGTTATACCAGTTGCGTGCATATCAATGCACATTCACGCTTCATGTACTCCAGAGATCCTGAGGAATAAACTAGCTGGTGATCAATGGATTGACTTGGCGAACGATGGTGAATCGTTGATTGGGCTGTTAAGAAGACGCAGCGGGATTAGAGCGGGAGATTTTGCAGGTGAGAAGAATCGGAAGCGATCGTGCGGATCGGAGTGCTTTTGGATTATAGAAGGTGTTAAATTGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

453

Amino Acids

49.7

Weight (kDa)

4.79

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	40 - 211	4.3e-25	LBP / BPI / CETP family, N-terminal domain
LBP_BPI_CETP_C	PF02886	277 - 400	3.7e-14	LBP / BPI / CETP family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23590 FvH4_3g23590 FvH4_3g23590 FvH4_3g23590
malus_domestica	MD03G1192700.v1.1
prunus_persica	Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1
pyrus_communis	pycom03g14500
rosa_chinensis	RchiOBHm_Chr5g0041601
rosa_laevigata	RLG00000034085
rosa_multiflora	Rmu_co8479759.1_g000001 Rmu_sc0000861.1_g000013 Rmu_sc0011648.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029690 Rroxscaffold_1G00038880 Rroxscaffold_2G00117350 Rroxscaffold_2G00128820 Rroxscaffold_4G00323640
rosa_rugosa	Rorug05G0194000 Rorug05G0194000
rosa_samantha	Rh5AG279600 Rh5BG284200 Rh5BG285000 Rh5CG316900 Rh5DG293800
rosa_wichuraiana	Rw5G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1277
Acc36I	ACCTGC	1 cut(s)	1277
AccBSI	CCGCTC	1 cut(s)	1274
AciI	CCGC	4 cut(s)	399, 1263, 1274, 1314
AclWI	GGATC	4 cut(s)	809, 1026, 1171, 1324
AcsI	RAATTY	3 cut(s)	45, 334, 740
AcuI	CTGAAG	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	830
AfaI	GTAC	3 cut(s)	356, 992, 1168
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	4 cut(s)	686, 718, 1224, 1256
AleI	CACNNNNGTG	1 cut(s)	704
AluBI	AGCT	7 cut(s)	443, 472, 634, 673, 767, 839, 1196
AluI	AGCT	7 cut(s)	443, 472, 634, 673, 767, 839, 1196
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	4 cut(s)	809, 1026, 1171, 1324
AoxI	GGCC	2 cut(s)	75, 396
ApeKI	GCWGC	2 cut(s)	686, 1260
ApoI	RAATTY	3 cut(s)	45, 334, 740
AspS9I	GGNCC	3 cut(s)	76, 396, 451
AsuHPI	GGTGA	3 cut(s)	1211, 1241, 1301
AvaII	GGWCC	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	1181
BbsI	GAAGAC	1 cut(s)	1261
Bbv12I	GWGCWC	1 cut(s)	835
BbvI	GCAGC	2 cut(s)	673, 1272
BccI	CCATC	4 cut(s)	521, 838, 960, 1220
BclI	TGATCA	1 cut(s)	1201
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	812, 1193
BfmI	CTRYAG	2 cut(s)	99, 585
BfrI	CTTAAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	1277
BisI	GCNGC	3 cut(s)	399, 687, 1261
BlsI	GCNGC	3 cut(s)	400, 688, 1262
BmcAI	AGTACT	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	3 cut(s)	76, 396, 451
BmiI	GGNNCC	3 cut(s)	7, 325, 397
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	482, 542, 550
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	1261
BpmI	CTGGAG	2 cut(s)	819, 1155
Bpu10I	CCTNAGC	1 cut(s)	439
BsaAI	YACGTR	1 cut(s)	369
BsaBI	GATNNNNATC	2 cut(s)	94, 1017
BsaJI	CCNNGG	3 cut(s)	132, 547, 888
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	295, 923, 1130
Bse21I	CCTNAGG	1 cut(s)	1181
Bse3DI	GCAATG	2 cut(s)	681, 857
Bse8I	GATNNNNATC	2 cut(s)	94, 1017
BseDI	CCNNGG	3 cut(s)	132, 547, 888
BseGI	GGATG	4 cut(s)	497, 565, 682, 971
BseJI	GATNNNNATC	2 cut(s)	94, 1017
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	2 cut(s)	681, 857
BseMII	CTCAG	2 cut(s)	713, 1172
BseNI	ACTGG	3 cut(s)	295, 923, 1130
BseXI	GCAGC	2 cut(s)	673, 1272
Bsh1285I	CGRYCG	1 cut(s)	1310
BshFI	GGCC	2 cut(s)	77, 398
BsiEI	CGRYCG	1 cut(s)	1310
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	77, 398
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	9 cut(s)	747, 814, 940, 1018, 1047, 1176, 1201, 1307, 1316
BspACI	CCGC	4 cut(s)	399, 1263, 1274, 1314
BspANI	GGCC	2 cut(s)	77, 398
BspCNI	CTCAG	2 cut(s)	714, 1173
BspLI	GGNNCC	3 cut(s)	7, 325, 397
BspMAI	CTGCAG	2 cut(s)	103, 589
BspMI	ACCTGC	1 cut(s)	1277
BspPI	GGATC	4 cut(s)	809, 1026, 1171, 1324
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	1274
BsrDI	GCAATG	2 cut(s)	681, 857
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	3 cut(s)	295, 923, 1130
BssECI	CCNNGG	3 cut(s)	132, 547, 888
BssMI	GATC	9 cut(s)	747, 814, 940, 1018, 1047, 1176, 1201, 1307, 1316
BssT1I	CCWWGG	3 cut(s)	132, 547, 888
Bst4CI	ACNGT	5 cut(s)	527, 990, 1033, 1057, 1084
Bst6I	CTCTTC	1 cut(s)	825
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	990
BstBAI	YACGTR	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	1138
BstDEI	CTNAG	5 cut(s)	439, 722, 793, 840, 1181
BstF5I	GGATG	4 cut(s)	497, 565, 682, 971
BstKTI	GATC	9 cut(s)	750, 817, 943, 1021, 1050, 1179, 1204, 1310, 1319
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	9 cut(s)	747, 814, 940, 1018, 1047, 1176, 1201, 1307, 1316
BstMCI	CGRYCG	1 cut(s)	1310
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 323, 661, 670
BstSFI	CTRYAG	2 cut(s)	99, 585
BstV1I	GCAGC	2 cut(s)	673, 1272
BstV2I	GAAGAC	1 cut(s)	1261
BstX2I	RGATCY	3 cut(s)	814, 1018, 1176
BstYI	RGATCY	3 cut(s)	814, 1018, 1176
Bsu36I	CCTNAGG	1 cut(s)	1181
BsuRI	GGCC	2 cut(s)	77, 398
BtsCI	GGATG	4 cut(s)	497, 565, 682, 971
BtsI	GCAGTG	3 cut(s)	327, 835, 957
BtsIMutI	CAGTG	4 cut(s)	327, 835, 957, 1080
BveI	ACCTGC	1 cut(s)	1277
Cac8I	GCNNGC	1 cut(s)	1138
Cfr13I	GGNCC	3 cut(s)	76, 396, 451
CseI	GACGC	1 cut(s)	1266
Csp6I	GTAC	3 cut(s)	355, 991, 1167
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	3 cut(s)	22, 863, 1164
CviQI	GTAC	3 cut(s)	355, 991, 1167
DdeI	CTNAG	5 cut(s)	439, 722, 793, 840, 1181
DpnI	GATC	9 cut(s)	749, 816, 942, 1020, 1049, 1178, 1203, 1309, 1318
DpnII	GATC	9 cut(s)	747, 814, 940, 1018, 1047, 1176, 1201, 1307, 1316
DraIII	CACNNNGTG	1 cut(s)	830
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
Eco130I	CCWWGG	3 cut(s)	132, 547, 888
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	1181
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	3 cut(s)	132, 547, 888
EcoT22I	ATGCAT	1 cut(s)	348
ErhI	CCWWGG	3 cut(s)	132, 547, 888
FaeI	CATG	3 cut(s)	25, 866, 1167
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	3 cut(s)	21, 862, 1163
FauI	CCCGC	2 cut(s)	1256, 1267
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	1201
Fnu4HI	GCNGC	3 cut(s)	399, 687, 1261
FokI	GGATG	4 cut(s)	504, 572, 689, 978
Fsp4HI	GCNGC	3 cut(s)	399, 687, 1261
FspBI	CTAG	2 cut(s)	812, 1193
GluI	GCNGC	3 cut(s)	399, 687, 1261
GsuI	CTGGAG	2 cut(s)	819, 1155
HaeIII	GGCC	2 cut(s)	77, 398
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	1266
Hin1II	CATG	3 cut(s)	25, 866, 1167
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	7 cut(s)	64, 90, 296, 638, 779, 1232, 1297
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	3 cut(s)	1211, 1241, 1301
Hpy166II	GTNNAC	6 cut(s)	572, 709, 809, 850, 1063, 1087
Hpy188I	TCNGA	6 cut(s)	63, 388, 747, 1093, 1302, 1321
Hpy188III	TCNNGA	4 cut(s)	122, 321, 1172, 1180
Hpy8I	GTNNAC	6 cut(s)	572, 709, 809, 850, 1063, 1087
HpyAV	CCTTC	6 cut(s)	67, 80, 410, 442, 614, 1334
HpyCH4III	ACNGT	5 cut(s)	527, 990, 1033, 1057, 1084
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	9 cut(s)	101, 332, 346, 587, 862, 905, 1140, 1150, 1286
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 323, 661, 670
HpyF3I	CTNAG	5 cut(s)	439, 722, 793, 840, 1181
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	25, 866, 1167
Ksp22I	TGATCA	1 cut(s)	1201
Kzo9I	GATC	9 cut(s)	747, 814, 940, 1018, 1047, 1176, 1201, 1307, 1316
LmnI	GCTCC	4 cut(s)	323, 530, 772, 838
Lsp1109I	GCAGC	2 cut(s)	673, 1272
LweI	GCATC	3 cut(s)	482, 542, 550
MaeI	CTAG	2 cut(s)	812, 1193
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	5 cut(s)	433, 642, 697, 1027, 1096
MalI	GATC	9 cut(s)	749, 816, 942, 1020, 1049, 1178, 1203, 1309, 1318
MbiI	CCGCTC	1 cut(s)	1274
MboI	GATC	9 cut(s)	747, 814, 940, 1018, 1047, 1176, 1201, 1307, 1316
MfeI	CAATTG	2 cut(s)	179, 1101
MflI	RGATCY	3 cut(s)	814, 1018, 1176
MhlI	GDGCHC	1 cut(s)	835
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	813
MnlI	CCTC	6 cut(s)	145, 195, 222, 828, 993, 1176
Mph1103I	ATGCAT	1 cut(s)	348
MseI	TTAA	7 cut(s)	468, 501, 876, 927, 1023, 1250, 1347
MslI	CAYNNNNRTG	3 cut(s)	704, 867, 1145
MspA1I	CMGCKG	1 cut(s)	1263
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	300
MunI	CAATTG	2 cut(s)	179, 1101
MwoI	GCNNNNNNNGC	4 cut(s)	314, 323, 661, 670
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	9 cut(s)	747, 814, 940, 1018, 1047, 1176, 1201, 1307, 1316
NlaIII	CATG	3 cut(s)	25, 866, 1167
NlaIV	GGNNCC	3 cut(s)	7, 325, 397
NmuCI	GTSAC	3 cut(s)	642, 697, 1096
NsiI	ATGCAT	1 cut(s)	348
OliI	CACNNNNGTG	1 cut(s)	704
PaqCI	CACCTGC	1 cut(s)	1277
PfeI	GAWTC	6 cut(s)	64, 90, 638, 779, 1232, 1297
PkrI	GCNGC	3 cut(s)	400, 688, 1262
Ple19I	CGATCG	1 cut(s)	1310
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	7, 325, 397
PspPI	GGNCC	3 cut(s)	76, 396, 451
PstI	CTGCAG	2 cut(s)	103, 589
PsuI	RGATCY	3 cut(s)	814, 1018, 1176
PvuI	CGATCG	1 cut(s)	1310
RsaI	GTAC	3 cut(s)	356, 992, 1168
RsaNI	GTAC	3 cut(s)	355, 991, 1167
RseI	CAYNNNNRTG	3 cut(s)	704, 867, 1145
SaqAI	TTAA	7 cut(s)	468, 501, 876, 927, 1023, 1250, 1347
SatI	GCNGC	3 cut(s)	399, 687, 1261
Sau3AI	GATC	9 cut(s)	747, 814, 940, 1018, 1047, 1176, 1201, 1307, 1316
Sau96I	GGNCC	3 cut(s)	76, 396, 451
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	3 cut(s)	482, 542, 550
SfcI	CTRYAG	2 cut(s)	99, 585
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	3 cut(s)	704, 867, 1145
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SsiI	CCGC	4 cut(s)	399, 1263, 1274, 1314
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	812, 1193
StyI	CCWWGG	3 cut(s)	132, 547, 888
TaaI	ACNGT	5 cut(s)	527, 990, 1033, 1057, 1084
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	669, 985
TaqII	GACCGA	1 cut(s)	209
TatI	WGTACW	3 cut(s)	354, 990, 1166
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	6 cut(s)	64, 90, 638, 779, 1232, 1297
Tru1I	TTAA	7 cut(s)	468, 501, 876, 927, 1023, 1250, 1347
Tru9I	TTAA	7 cut(s)	468, 501, 876, 927, 1023, 1250, 1347
TscAI	CASTG	4 cut(s)	334, 835, 964, 1087
TseFI	GTSAC	3 cut(s)	642, 697, 1096
TseI	GCWGC	2 cut(s)	686, 1260
Tsp45I	GTSAC	3 cut(s)	642, 697, 1096
TspDTI	ATGAA	7 cut(s)	10, 82, 267, 879, 929, 1134, 1152
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	4 cut(s)	334, 835, 964, 1087
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	3 cut(s)	45, 334, 740
XspI	CTAG	2 cut(s)	812, 1193
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.