Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005529

Physical Location & Seq

Genomic Coordinates Reverse (-)

36500456 .. 36504773

Gene Structure 4318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGGAGTGGCCTCGCTACCACCACTGGAGGATAACATAAGAGATCGGGCTCTGGTTCTAGCTTCGGCATTAGTCACCAAGGCATCGGCTTCTGAATCACAGGCGAGAGCGAGAGAGATCTTTCCAGACACAATTGGTTTTGTTAGAAAGTTCATGGCTTTGACTACTTTATTCACAGTTTTATCACTTTTTCTGATTCCTACAAAAGCCCAAGAAGTAGGATTCATATCCGCAGTTATATCAAGTAAAGGTCTTGACTTTACCAAGGACTTGCTGATACAAGAGGCAATTTCTTCTATAATTCCACTTGAATTGCCTCAAATTGAAAAGTCTGTGAAAATCCCACTTATCGGTCAAGTTGATGTTGCTCTGTCCAATATCACAATATATAGTGTTGATATTGCTTCTTCATATGTGGAGACTGGGGACTCCGGTATTGCTTTGGTTGCTTCAGGAGCCACTGCAAATTTGAGTATGCATTGGCAGTACTCTTATACTACTTGGTTGTTTGAAGTTTCGGATAATGGGGCCGCCTTTATTCAGGTTGAAGGTATGGAAGTTGGTGTTACCTTAGCTTTGAAGGACCAACAAGGAAGTCTTAAGCTGTCTGTTTTGGATTGTGGATGCTATGTGAAGGATATCTCCATCAAGTTAGACGGTGGAGCATCTTGGCTTTACCAAGGGATAGTGGATGCTTTTGGTGGACAAATAGTTTCTGCAGTTGAAGAAAATATTTCCAAGAAAGTCAAAGAAGGAATAACGAAGCTTGATTCGTCACTTCAATCGCTTCCAAAGCAAATCGAGCTGGATGACATTGCTGCTTTGAATGTCACTTTGGTGGACAATCCTGTGCTGAGTAATTCTTCCATTGAATTTCAGATCAATGGTCTATTCACAGCTCCTATTGATGATTCCACATCCAGCTTAGACCATAAAGGTTCACTAGATCCTCTTCCATGCAGTGCTCCAGCTAAGATGGTTGAGATATCATTGCATGAAGATGTCTTTAACTCAGTGTCCTTGGTCTATTTCAATGCAAACTATATGAACTGGATTATTAACAAAATACCAGATCAATCCCTTTTGAACACTGCTGGATGGAGATACATTATTCCTCGACTGTACAAGCAGTATCCAAACAAGGATATGGATCTTAATGTTACTGTATCTTCTCAACCAATCATTACAGTTGTGAACAATGGCATTGACATCACTGTTTACTCTGATGTGACAATTGATGTCATAGACAATGAAGTTATACCAGTTTCGTGCATATCAATGCACATTCACGCTTTATGTACTCCAGAGATCCTGAGGAATAAACTAGCTGGTATTGTTAAATTGAATGATTTTACTGCATCTTTGAAGTGGAGCAAAATTGGTGACCTACACATGCATCTCGTTCAGGCAGTGTTGTCAACGGTCCTCAAAACTGTTATCATGCCTTATGTGAATTTATGGCTCTGGAAAGGACTACCTTTACCACTTCCGCATGGATTTAAGCTTCATAATTCTGAAACCTTCTCCACCAACTCAAGGCTTACAATATACAGTGATGTTGAGTTTGTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

525

Amino Acids

57.31

Weight (kDa)

4.89

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LBP_BPI_CETP	PF01273	84 - 255	2e-24	LBP / BPI / CETP family, N-terminal domain
LBP_BPI_CETP_C	PF02886	321 - 521	2.5e-33	LBP / BPI / CETP family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23590 FvH4_3g23590 FvH4_3g23590 FvH4_3g23590
malus_domestica	MD03G1192700.v1.1
prunus_persica	Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1
pyrus_communis	pycom03g14500
rosa_chinensis	RchiOBHm_Chr5g0041601
rosa_laevigata	RLG00000034085
rosa_multiflora	Rmu_co8479759.1_g000001 Rmu_sc0000861.1_g000013 Rmu_sc0011648.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029690 Rroxscaffold_1G00038880 Rroxscaffold_2G00117350 Rroxscaffold_2G00128820 Rroxscaffold_4G00323640
rosa_rugosa	Rorug05G0194000 Rorug05G0194000
rosa_samantha	Rh5AG279600 Rh5BG284200 Rh5BG285000 Rh5CG316900 Rh5DG293800
rosa_wichuraiana	Rw5G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	231, 531, 1490
AclWI	GGATC	3 cut(s)	941, 1158, 1303
AcsI	RAATTY	3 cut(s)	466, 872, 1453
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	3 cut(s)	488, 1124, 1300
AfiI	CCNNNNNNNGG	2 cut(s)	350, 1536
AflII	CTTAAG	1 cut(s)	599
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
AleI	CACNNNNGTG	1 cut(s)	836
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	3 cut(s)	941, 1158, 1303
AoxI	GGCC	2 cut(s)	9, 528
ApeKI	GCWGC	1 cut(s)	818
ApoI	RAATTY	3 cut(s)	466, 872, 1453
AspS9I	GGNCC	3 cut(s)	528, 583, 1423
AsuHPI	GGTGA	2 cut(s)	67, 1394
AvaII	GGWCC	2 cut(s)	583, 1423
AxyI	CCTNAGG	1 cut(s)	1313
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	967
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	3 cut(s)	653, 970, 1092
BciVI	GTATCC	1 cut(s)	1143
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	59, 944, 1325
BfmI	CTRYAG	1 cut(s)	717
BfrI	CTTAAG	1 cut(s)	599
BfuI	GTATCC	1 cut(s)	1143
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	2 cut(s)	531, 819
BlsI	GCNGC	2 cut(s)	532, 820
BmcAI	AGTACT	1 cut(s)	488
Bme18I	GGWCC	2 cut(s)	583, 1423
BmgT120I	GGNCC	3 cut(s)	528, 583, 1423
BmiI	GGNNCC	2 cut(s)	457, 529
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	6 cut(s)	92, 614, 674, 682, 1367, 1405
BmuI	ACTGGG	1 cut(s)	432
BpmI	CTGGAG	3 cut(s)	47, 951, 1287
Bpu10I	CCTNAGC	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	1519
BsaBI	GATNNNNATC	2 cut(s)	226, 1149
BsaJI	CCNNGG	4 cut(s)	78, 264, 679, 1020
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 1536
Bse1I	ACTGG	4 cut(s)	30, 427, 1055, 1262
Bse21I	CCTNAGG	1 cut(s)	1313
Bse3DI	GCAATG	2 cut(s)	813, 989
Bse8I	GATNNNNATC	2 cut(s)	226, 1149
BseDI	CCNNGG	4 cut(s)	78, 264, 679, 1020
BseGI	GGATG	5 cut(s)	629, 697, 814, 917, 1103
BseJI	GATNNNNATC	2 cut(s)	226, 1149
BseLI	CCNNNNNNNGG	2 cut(s)	350, 1536
BseMI	GCAATG	2 cut(s)	813, 989
BseMII	CTCAG	3 cut(s)	845, 1026, 1304
BseNI	ACTGG	4 cut(s)	30, 427, 1055, 1262
BseXI	GCAGC	1 cut(s)	805
BshFI	GGCC	2 cut(s)	11, 530
BsiHKAI	GWGCWC	1 cut(s)	967
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	350, 1536
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	11, 530
Bsp1286I	GDGCHC	2 cut(s)	52, 967
Bsp1407I	TGTACA	1 cut(s)	1122
Bsp143I	GATC	7 cut(s)	43, 117, 879, 946, 1072, 1150, 1308
BspACI	CCGC	3 cut(s)	231, 531, 1490
BspANI	GGCC	2 cut(s)	11, 530
BspCNI	CTCAG	3 cut(s)	846, 1025, 1305
BspLI	GGNNCC	2 cut(s)	457, 529
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	3 cut(s)	941, 1158, 1303
BspTI	CTTAAG	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	813, 989
BsrGI	TGTACA	1 cut(s)	1122
BsrI	ACTGG	4 cut(s)	30, 427, 1055, 1262
BssECI	CCNNGG	4 cut(s)	78, 264, 679, 1020
BssMI	GATC	7 cut(s)	43, 117, 879, 946, 1072, 1150, 1308
BssT1I	CCWWGG	4 cut(s)	78, 264, 679, 1020
Bst4CI	ACNGT	9 cut(s)	178, 659, 1122, 1165, 1189, 1216, 1423, 1435, 1553
Bst6I	CTCTTC	1 cut(s)	957
BstAFI	CTTAAG	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	1122
BstDEI	CTNAG	6 cut(s)	571, 854, 925, 972, 1012, 1313
BstEII	GGTNACC	1 cut(s)	1382
BstF5I	GGATG	5 cut(s)	629, 697, 814, 917, 1103
BstKTI	GATC	7 cut(s)	46, 120, 882, 949, 1075, 1153, 1311
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	7 cut(s)	43, 117, 879, 946, 1072, 1150, 1308
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 455, 793, 802
BstNSI	RCATGY	1 cut(s)	1396
BstPI	GGTNACC	1 cut(s)	1382
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	1 cut(s)	805
BstX2I	RGATCY	4 cut(s)	117, 946, 1150, 1308
BstYI	RGATCY	4 cut(s)	117, 946, 1150, 1308
Bsu36I	CCTNAGG	1 cut(s)	1313
BsuI	GTATCC	1 cut(s)	1143
BsuRI	GGCC	2 cut(s)	11, 530
BtsCI	GGATG	5 cut(s)	629, 697, 814, 917, 1103
BtsI	GCAGTG	4 cut(s)	459, 967, 1089, 1416
BtsIMutI	CAGTG	8 cut(s)	23, 459, 967, 1020, 1089, 1212, 1416, 1558
Cfr13I	GGNCC	3 cut(s)	528, 583, 1423
Csp6I	GTAC	3 cut(s)	487, 1123, 1299
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	6 cut(s)	154, 957, 995, 1393, 1441, 1493
CviQI	GTAC	3 cut(s)	487, 1123, 1299
DdeI	CTNAG	6 cut(s)	571, 854, 925, 972, 1012, 1313
DpnI	GATC	7 cut(s)	45, 119, 881, 948, 1074, 1152, 1310
DpnII	GATC	7 cut(s)	43, 117, 879, 946, 1072, 1150, 1308
Eam1104I	CTCTTC	1 cut(s)	957
EarI	CTCTTC	1 cut(s)	957
Eco130I	CCWWGG	4 cut(s)	78, 264, 679, 1020
Eco24I	GRGCYC	1 cut(s)	52
Eco32I	GATATC	2 cut(s)	640, 987
Eco47I	GGWCC	2 cut(s)	583, 1423
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	1313
Eco91I	GGTNACC	1 cut(s)	1382
EcoO65I	GGTNACC	1 cut(s)	1382
EcoRV	GATATC	2 cut(s)	640, 987
EcoT14I	CCWWGG	4 cut(s)	78, 264, 679, 1020
EcoT22I	ATGCAT	2 cut(s)	480, 1398
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	4 cut(s)	78, 264, 679, 1020
FaeI	CATG	6 cut(s)	157, 960, 998, 1396, 1444, 1496
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	6 cut(s)	153, 956, 994, 1392, 1440, 1492
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	531, 819
FokI	GGATG	5 cut(s)	636, 704, 821, 904, 1110
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	531, 819
FspBI	CTAG	3 cut(s)	59, 944, 1325
GluI	GCNGC	2 cut(s)	531, 819
GsuI	CTGGAG	3 cut(s)	47, 951, 1287
HaeIII	GGCC	2 cut(s)	11, 530
HapII	CCGG	1 cut(s)	432
Hin1II	CATG	6 cut(s)	157, 960, 998, 1396, 1444, 1496
HincII	GTYRAC	1 cut(s)	1419
HindII	GTYRAC	1 cut(s)	1419
HindIII	AAGCTT	2 cut(s)	764, 1502
HinfI	GANTC	6 cut(s)	95, 196, 222, 428, 770, 911
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	2 cut(s)	67, 1394
Hpy166II	GTNNAC	6 cut(s)	704, 841, 941, 1195, 1219, 1419
Hpy188I	TCNGA	6 cut(s)	94, 195, 520, 879, 1225, 1516
Hpy188III	TCNNGA	6 cut(s)	125, 254, 453, 1304, 1312, 1465
Hpy8I	GTNNAC	6 cut(s)	704, 841, 941, 1195, 1219, 1419
HpyAV	CCTTC	5 cut(s)	542, 574, 628, 746, 1531
HpyCH4III	ACNGT	9 cut(s)	178, 659, 1122, 1165, 1189, 1216, 1423, 1435, 1553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 455, 793, 802
HpyF3I	CTNAG	6 cut(s)	571, 854, 925, 972, 1012, 1313
Hsp92II	CATG	6 cut(s)	157, 960, 998, 1396, 1444, 1496
Kzo9I	GATC	7 cut(s)	43, 117, 879, 946, 1072, 1150, 1308
LmnI	GCTCC	5 cut(s)	455, 662, 904, 970, 1371
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	6 cut(s)	92, 614, 674, 682, 1367, 1405
MaeI	CTAG	3 cut(s)	59, 944, 1325
MaeIII	GTNAC	7 cut(s)	73, 565, 774, 829, 1159, 1228, 1382
MalI	GATC	7 cut(s)	45, 119, 881, 948, 1074, 1152, 1310
MboI	GATC	7 cut(s)	43, 117, 879, 946, 1072, 1150, 1308
MboII	GAAGA	7 cut(s)	285, 399, 737, 855, 944, 1010, 1161
MfeI	CAATTG	2 cut(s)	132, 1233
MflI	RGATCY	4 cut(s)	117, 946, 1150, 1308
MhlI	GDGCHC	2 cut(s)	52, 967
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	8 cut(s)	22, 22, 277, 327, 960, 1125, 1308, 1436
Mph1103I	ATGCAT	2 cut(s)	480, 1398
MseI	TTAA	6 cut(s)	600, 1008, 1059, 1155, 1338, 1500
MslI	CAYNNNNRTG	3 cut(s)	836, 999, 1277
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	1 cut(s)	432
MunI	CAATTG	2 cut(s)	132, 1233
MwoI	GCNNNNNNNGC	4 cut(s)	446, 455, 793, 802
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	7 cut(s)	43, 117, 879, 946, 1072, 1150, 1308
NlaIII	CATG	6 cut(s)	157, 960, 998, 1396, 1444, 1496
NlaIV	GGNNCC	2 cut(s)	457, 529
NmuCI	GTSAC	5 cut(s)	73, 774, 829, 1228, 1382
NsiI	ATGCAT	2 cut(s)	480, 1398
NspI	RCATGY	1 cut(s)	1396
OliI	CACNNNNGTG	1 cut(s)	836
PfeI	GAWTC	5 cut(s)	95, 196, 222, 770, 911
PkrI	GCNGC	2 cut(s)	532, 820
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PspEI	GGTNACC	1 cut(s)	1382
PspN4I	GGNNCC	2 cut(s)	457, 529
PspPI	GGNCC	3 cut(s)	528, 583, 1423
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	4 cut(s)	117, 946, 1150, 1308
RsaI	GTAC	3 cut(s)	488, 1124, 1300
RsaNI	GTAC	3 cut(s)	487, 1123, 1299
RseI	CAYNNNNRTG	3 cut(s)	836, 999, 1277
SaqAI	TTAA	6 cut(s)	600, 1008, 1059, 1155, 1338, 1500
SatI	GCNGC	2 cut(s)	531, 819
Sau3AI	GATC	7 cut(s)	43, 117, 879, 946, 1072, 1150, 1308
Sau96I	GGNCC	3 cut(s)	528, 583, 1423
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	2 cut(s)	52, 967
SfaNI	GCATC	6 cut(s)	92, 614, 674, 682, 1367, 1405
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	2 cut(s)	583, 1423
SmiMI	CAYNNNNRTG	3 cut(s)	836, 999, 1277
SmlI	CTYRAG	2 cut(s)	599, 1534
SmoI	CTYRAG	2 cut(s)	599, 1534
SsiI	CCGC	3 cut(s)	231, 531, 1490
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	3 cut(s)	59, 944, 1325
StyI	CCWWGG	4 cut(s)	78, 264, 679, 1020
TaaI	ACNGT	9 cut(s)	178, 659, 1122, 1165, 1189, 1216, 1423, 1435, 1553
TaqI	TCGA	2 cut(s)	801, 1117
TaqII	GACCGA	1 cut(s)	341
TatI	WGTACW	3 cut(s)	486, 1122, 1298
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	5 cut(s)	95, 196, 222, 770, 911
Tru1I	TTAA	6 cut(s)	600, 1008, 1059, 1155, 1338, 1500
Tru9I	TTAA	6 cut(s)	600, 1008, 1059, 1155, 1338, 1500
TscAI	CASTG	8 cut(s)	30, 466, 967, 1020, 1096, 1219, 1416, 1558
TseFI	GTSAC	5 cut(s)	73, 774, 829, 1228, 1382
TseI	GCWGC	1 cut(s)	818
Tsp45I	GTSAC	5 cut(s)	73, 774, 829, 1228, 1382
TspDTI	ATGAA	7 cut(s)	142, 214, 399, 1011, 1061, 1266, 1496
TspRI	CASTG	8 cut(s)	30, 466, 967, 1020, 1096, 1219, 1416, 1558
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	2 cut(s)	583, 1423
XapI	RAATTY	3 cut(s)	466, 872, 1453
XceI	RCATGY	1 cut(s)	1396
XspI	CTAG	3 cut(s)	59, 944, 1325
ZrmI	AGTACT	1 cut(s)	488
Zsp2I	ATGCAT	2 cut(s)	480, 1398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.