Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8479759.1

Orthogroup ID

OG0005529

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1441

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8479759.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggaagttggtgttaccttagctttgaaggaccaacaaggaagtcttaagctgtctgttttggattgtggatgctatgtgaaggatatctccatcaagttagacggtggagcatcttggctttaccaagggatagtggatgctttcggtggacaaatagtttctgcagttgaagaaaatatttccaagaaagtcaaagaaggaataacgaagcttgattcgtcacttcaatcgcttccaaagcaaatcgagctggatgacattgctgctttgaatgtcactttggtggacaatcctgtactgagtaattcttccattgaatttcagatcaatggtctattcacagctcctattgatgattccacatccagcttagaccataaaggttcactagatcctcttccacgcagtgctccagctaagatggttgagatatcattgcatgaagatgtctttaactcggtgtccttgctctatttcaatgcaaactatatgaactggattattaacaaaataccagatcaatcccttttgaacactgctggatggagatacattattcctcgactgtacaagcagtatccaaacaaggatatggatcttaacattactgtatcttctcaaccaatcattacagttgtgaacaatggcattgacatcactgtttactctgatgtgacaattgatgtcatagacaatgaagttataccagttgcgtgcatatcaatgcacattcacgcttcatgtactccagagatcctgaggaataaactagctggtattgttaaattgaatgattttactgcatctttgaagtggagcaaaattggtgacctacacatgcgcctcgttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

285

Amino Acids

31.35

Weight (kDa)

4.91

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23590 FvH4_3g23590 FvH4_3g23590 FvH4_3g23590
malus_domestica	MD03G1192700.v1.1
prunus_persica	Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1
pyrus_communis	pycom03g14500
rosa_chinensis	RchiOBHm_Chr5g0041601
rosa_laevigata	RLG00000034085
rosa_multiflora	Rmu_co8479759.1_g000001 Rmu_sc0000861.1_g000013 Rmu_sc0011648.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029690 Rroxscaffold_1G00038880 Rroxscaffold_2G00117350 Rroxscaffold_2G00128820 Rroxscaffold_4G00323640
rosa_rugosa	Rorug05G0194000 Rorug05G0194000
rosa_samantha	Rh5AG279600 Rh5BG284200 Rh5BG285000 Rh5CG316900 Rh5DG293800
rosa_wichuraiana	Rw5G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	389, 606, 751
AcsI	RAATTY	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	3 cut(s)	300, 572, 748
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	9 cut(s)	28, 173, 230, 274, 320, 481, 535, 793, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	8 cut(s)	23, 52, 214, 253, 347, 372, 419, 776
AluI	AGCT	8 cut(s)	23, 52, 214, 253, 347, 372, 419, 776
Alw21I	GWGCWC	1 cut(s)	415
AlwI	GGATC	3 cut(s)	389, 606, 751
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	846
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	842
AvaII	GGWCC	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	761
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	101, 418, 540
BciVI	GTATCC	1 cut(s)	591
BfaI	CTAG	2 cut(s)	392, 773
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	591
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmsI	GCATC	4 cut(s)	62, 122, 130, 815
BpmI	CTGGAG	2 cut(s)	399, 735
Bpu10I	CCTNAGC	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	503, 710
Bse21I	CCTNAGG	1 cut(s)	761
Bse3DI	GCAATG	2 cut(s)	261, 437
Bse8I	GATNNNNATC	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	5 cut(s)	77, 145, 262, 365, 551
BseJI	GATNNNNATC	1 cut(s)	597
BseMI	GCAATG	2 cut(s)	261, 437
BseMII	CTCAG	2 cut(s)	293, 752
BseNI	ACTGG	2 cut(s)	503, 710
BseXI	GCAGC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	5 cut(s)	327, 394, 520, 598, 756
BspCNI	CTCAG	2 cut(s)	294, 753
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	3 cut(s)	389, 606, 751
BspTI	CTTAAG	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	261, 437
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	503, 710
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	5 cut(s)	327, 394, 520, 598, 756
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	5 cut(s)	107, 570, 613, 637, 664
Bst6I	CTCTTC	1 cut(s)	405
BstAFI	CTTAAG	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	5 cut(s)	19, 302, 373, 420, 761
BstEII	GGTNACC	1 cut(s)	830
BstF5I	GGATG	5 cut(s)	77, 145, 262, 365, 551
BstHHI	GCGC	1 cut(s)	846
BstKTI	GATC	5 cut(s)	330, 397, 523, 601, 759
BstMBI	GATC	5 cut(s)	327, 394, 520, 598, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 250
BstNSI	RCATGY	1 cut(s)	844
BstPI	GGTNACC	1 cut(s)	830
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	3 cut(s)	394, 598, 756
BstYI	RGATCY	3 cut(s)	394, 598, 756
Bsu36I	CCTNAGG	1 cut(s)	761
BsuI	GTATCC	1 cut(s)	591
BtsCI	GGATG	5 cut(s)	77, 145, 262, 365, 551
BtsI	GCAGTG	2 cut(s)	415, 537
BtsIMutI	CAGTG	3 cut(s)	415, 537, 660
Cac8I	GCNNGC	1 cut(s)	718
CfoI	GCGC	1 cut(s)	846
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	299, 571, 747
CviAII	CATG	3 cut(s)	443, 744, 841
CviJI	RGCY	9 cut(s)	23, 52, 121, 214, 253, 347, 372, 419, 776
CviKI_1	RGCY	9 cut(s)	23, 52, 121, 214, 253, 347, 372, 419, 776
CviQI	GTAC	3 cut(s)	299, 571, 747
DdeI	CTNAG	5 cut(s)	19, 302, 373, 420, 761
DpnI	GATC	5 cut(s)	329, 396, 522, 600, 758
DpnII	GATC	5 cut(s)	327, 394, 520, 598, 756
DraIII	CACNNNGTG	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	127
Eco32I	GATATC	2 cut(s)	88, 435
Eco47I	GGWCC	1 cut(s)	31
Eco81I	CCTNAGG	1 cut(s)	761
Eco91I	GGTNACC	1 cut(s)	830
EcoO65I	GGTNACC	1 cut(s)	830
EcoRV	GATATC	2 cut(s)	88, 435
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	3 cut(s)	446, 747, 844
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	3 cut(s)	442, 743, 840
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	5 cut(s)	84, 152, 269, 352, 558
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	392, 773
GlaI	GCGC	1 cut(s)	845
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	2 cut(s)	399, 735
HhaI	GCGC	1 cut(s)	846
Hin1II	CATG	3 cut(s)	446, 747, 844
Hin6I	GCGC	1 cut(s)	844
HinP1I	GCGC	1 cut(s)	844
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	218, 359
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	5 cut(s)	152, 289, 389, 643, 667
Hpy188I	TCNGA	2 cut(s)	327, 673
Hpy188III	TCNNGA	2 cut(s)	752, 760
Hpy8I	GTNNAC	5 cut(s)	152, 289, 389, 643, 667
HpyAV	CCTTC	3 cut(s)	22, 76, 194
HpyCH4III	ACNGT	5 cut(s)	107, 570, 613, 637, 664
HpyCH4V	TGCA	6 cut(s)	167, 442, 485, 720, 730, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 250
HpyF3I	CTNAG	5 cut(s)	19, 302, 373, 420, 761
Hsp92II	CATG	3 cut(s)	446, 747, 844
HspAI	GCGC	1 cut(s)	844
Kzo9I	GATC	5 cut(s)	327, 394, 520, 598, 756
LmnI	GCTCC	4 cut(s)	110, 352, 418, 819
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	4 cut(s)	62, 122, 130, 815
MaeI	CTAG	2 cut(s)	392, 773
MaeIII	GTNAC	5 cut(s)	13, 222, 277, 676, 830
MalI	GATC	5 cut(s)	329, 396, 522, 600, 758
MboI	GATC	5 cut(s)	327, 394, 520, 598, 756
MboII	GAAGA	5 cut(s)	185, 303, 392, 458, 609
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	3 cut(s)	394, 598, 756
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	5 cut(s)	307, 320, 681, 788, 825
MnlI	CCTC	3 cut(s)	408, 573, 756
MseI	TTAA	5 cut(s)	48, 456, 507, 603, 786
MslI	CAYNNNNRTG	3 cut(s)	284, 447, 725
MspCI	CTTAAG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	681
MwoI	GCNNNNNNNGC	2 cut(s)	241, 250
NdeII	GATC	5 cut(s)	327, 394, 520, 598, 756
NlaIII	CATG	3 cut(s)	446, 747, 844
NmuCI	GTSAC	4 cut(s)	222, 277, 676, 830
NspI	RCATGY	1 cut(s)	844
OliI	CACNNNNGTG	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	218, 359
PkrI	GCNGC	1 cut(s)	268
PspEI	GGTNACC	1 cut(s)	830
PspPI	GGNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	3 cut(s)	394, 598, 756
RsaI	GTAC	3 cut(s)	300, 572, 748
RsaNI	GTAC	3 cut(s)	299, 571, 747
RseI	CAYNNNNRTG	3 cut(s)	284, 447, 725
SaqAI	TTAA	5 cut(s)	48, 456, 507, 603, 786
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	5 cut(s)	327, 394, 520, 598, 756
Sau96I	GGNCC	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	4 cut(s)	62, 122, 130, 815
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	3 cut(s)	284, 447, 725
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	5 cut(s)	307, 320, 681, 788, 825
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	392, 773
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	5 cut(s)	107, 570, 613, 637, 664
TaqI	TCGA	2 cut(s)	249, 565
TasI	AATT	5 cut(s)	307, 320, 681, 788, 825
TatI	WGTACW	3 cut(s)	298, 570, 746
TfiI	GAWTC	2 cut(s)	218, 359
Tru1I	TTAA	5 cut(s)	48, 456, 507, 603, 786
Tru9I	TTAA	5 cut(s)	48, 456, 507, 603, 786
TscAI	CASTG	3 cut(s)	415, 544, 667
TseFI	GTSAC	4 cut(s)	222, 277, 676, 830
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	4 cut(s)	222, 277, 676, 830
TspDTI	ATGAA	4 cut(s)	459, 509, 714, 732
TspRI	CASTG	3 cut(s)	415, 544, 667
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	844
XspI	CTAG	2 cut(s)	392, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.