Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005529

Physical Location & Seq

Genomic Coordinates Reverse (-)

14091233 .. 14097995

Gene Structure 6763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G224100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGGTTCCTTCACAAAGTTCATGGCATCTGCTATTTTCTTCATAGTTTTATCATTTTTTCTTGTTCCTACAAGAACCCAAGAAGAAGGATTCATATCTTTTGTCATATCCAGCAAGGGTCTTGAGTTTTCTAAGGACTTGCTAATAGAGCAGGCTGTTTCCTCTATAATCCCCCTTCAACTGCCTCAGATTGAAAAGTCTGTGAAAATCCCACTTGTTGGCCAAGTTCATGTTGTTCTGTCCAATATCACAATCTATAATGTTGATATTGCTTCTTCATATGTGGAGACTGGTGACTCAGGTATTGCTTTAATTGCTTCAGGAGCCACGGCAAATTTGAGTATGGATTGGTGCTATTCTTATAGCACTTGGTTATTTGATATTTCAGATCATGGGGACGCCTCCATTCAGGTTGAAGGTATGGAAGTGGGTGTTACCTTAGCTTTGAATGGCCAAGAAGGAACTCTTAAGCTGTCTGTTTTGGAATGTGGATGCTATGTGAAAGATATCTCCATTAAGTTAGATGGTGGAGCATCTTGGCTTTACCAAGGGTTAGTGGATGCTTTTGAAGGTCAAATAGTTTCTGCAGTTGAAGACAATATTTCCAAGAAAATCAGAGAAGGAATAATGAAGCTTGACTTCTTACTACAATCACTTCCAAAACAAATCGCACTGGATGACATTGCTGCTTTGAATGTTACATTTGTGGGCAATCCTGTATTCAGTAATTCTTCCATTGAATTTCAGATCAATGGTCTATTCATGGCTCCCAATGATGATTTTGCTTCCAGCCTATACAATAAGGGTTCACTAGATCCTGTTCCCTTCAATGCTCCAGCTAAGATGGTTGAGATATCATTACATGAAAATGTCTTTAGCTCAGTGTCCTTAGTTTTCTTCAAGGCAAATTATATGCAATGGGTGATCAACAAAACACCAGATCAGTCCCTTTTGAACACTGCTGGATGGAAATACATTGTTCCTCAACTGTACAAGCAATATCCCAATGAAGATATGGAGCTTAATATATCTGTCTCTTCTCCACCAATAATGACAGTTGTTAACAATGGCATTAATATCACTGTTTACTCTGATGTGACAATTGGTGTCATGGATGCTGATGAAGTAATACCAGTTGCGTGCATATCATTGGAGATTCATGCTTCATGTTCTCCAGATATCTTAATAAATAAACTAGCTGGTACTGTTAAATTGAATCATGTTACTGCATATTTGAAGTGGAGCAAAATTGGTAACCTTCACATGCATCTTGTTCAGGCCGTATTGTCAACAATTCTCAAAACTGTTGTGGTGCCATATGTGAATTTACACCTCTGGAAGGGACTACCTTTACCACTTCCTCATGGGTTTACACTACATAATTCTGAAATCGTCTCCATTAATTCAAGGCTTACGATATTCAGCGATGTTGCGATTGCAGAACGATCACCGACATCAGGCCAAGAAGATGGAACACCATGGCCAGTTGATGGGAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

501

Amino Acids

54.62

Weight (kDa)

4.82

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23590 FvH4_3g23590 FvH4_3g23590 FvH4_3g23590
malus_domestica	MD03G1192700.v1.1
prunus_persica	Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1
pyrus_communis	pycom03g14500
rosa_chinensis	RchiOBHm_Chr5g0041601
rosa_laevigata	RLG00000034085
rosa_multiflora	Rmu_co8479759.1_g000001 Rmu_sc0000861.1_g000013 Rmu_sc0011648.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029690 Rroxscaffold_1G00038880 Rroxscaffold_2G00117350 Rroxscaffold_2G00128820 Rroxscaffold_4G00323640
rosa_rugosa	Rorug05G0194000 Rorug05G0194000
rosa_samantha	Rh5AG279600 Rh5BG284200 Rh5BG285000 Rh5CG316900 Rh5DG293800
rosa_wichuraiana	Rw5G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1312
AccB7I	CCANNNNNTGG	2 cut(s)	218, 1490
AclWI	GGATC	1 cut(s)	809
AcoI	YGGCCR	3 cut(s)	220, 451, 1481
AcsI	RAATTY	3 cut(s)	334, 740, 1324
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	2 cut(s)	992, 1204
AfiI	CCNNNNNNNGG	4 cut(s)	218, 1339, 1457, 1490
AflII	CTTAAG	1 cut(s)	467
AluBI	AGCT	7 cut(s)	443, 472, 634, 839, 879, 1021, 1199
AluI	AGCT	7 cut(s)	443, 472, 634, 839, 879, 1021, 1199
Alw26I	GTCTC	3 cut(s)	281, 1039, 1399
AlwI	GGATC	1 cut(s)	809
AoxI	GGCC	5 cut(s)	220, 451, 1278, 1459, 1481
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	3 cut(s)	334, 740, 1324
AseI	ATTAAT	2 cut(s)	1074, 1401
AsuHPI	GGTGA	3 cut(s)	305, 934, 1440
BalI	TGGCCA	3 cut(s)	222, 453, 1483
BanI	GGYRCC	1 cut(s)	1312
BbsI	GAAGAC	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	5 cut(s)	518, 838, 960, 1463, 1484
BceAI	ACGGC	2 cut(s)	345, 1265
BclI	TGATCA	1 cut(s)	924
BcoDI	GTCTC	3 cut(s)	281, 1039, 1399
BfaI	CTAG	2 cut(s)	812, 1196
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	467
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
BmiI	GGNNCC	4 cut(s)	7, 325, 768, 1314
BmsI	GCATC	6 cut(s)	35, 482, 542, 550, 1105, 1276
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	2 cut(s)	819, 1158
Bpu10I	CCTNAGC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	327, 547, 1478
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 1339, 1457, 1490
Bse1I	ACTGG	4 cut(s)	295, 678, 1133, 1484
Bse3DI	GCAATG	2 cut(s)	681, 923
Bse8I	GATNNNNATC	1 cut(s)	94
BseDI	CCNNGG	3 cut(s)	327, 547, 1478
BseGI	GGATG	5 cut(s)	497, 565, 682, 971, 1120
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	4 cut(s)	218, 1339, 1457, 1490
BseMI	GCAATG	2 cut(s)	681, 923
BseMII	CTCAG	3 cut(s)	200, 312, 894
BseNI	ACTGG	4 cut(s)	295, 678, 1133, 1484
BseXI	GCAGC	1 cut(s)	673
BshFI	GGCC	5 cut(s)	222, 453, 1280, 1461, 1483
BshNI	GGYRCC	1 cut(s)	1312
BslFI	GGGAC	3 cut(s)	410, 931, 1356
BslI	CCNNNNNNNGG	4 cut(s)	218, 1339, 1457, 1490
BsmAI	GTCTC	3 cut(s)	281, 1039, 1399
BsmBI	CGTCTC	1 cut(s)	1399
BsmFI	GGGAC	3 cut(s)	410, 931, 1356
BsnI	GGCC	5 cut(s)	222, 453, 1280, 1461, 1483
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	6 cut(s)	388, 747, 814, 924, 940, 1445
Bsp19I	CCATGG	1 cut(s)	1478
BspANI	GGCC	5 cut(s)	222, 453, 1280, 1461, 1483
BspCNI	CTCAG	3 cut(s)	199, 311, 893
BspLI	GGNNCC	4 cut(s)	7, 325, 768, 1314
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	809
BspT107I	GGYRCC	1 cut(s)	1312
BspTI	CTTAAG	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	681, 923
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	4 cut(s)	295, 678, 1133, 1484
BssECI	CCNNGG	3 cut(s)	327, 547, 1478
BssMI	GATC	6 cut(s)	388, 747, 814, 924, 940, 1445
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	547, 1478
Bst4CI	ACNGT	5 cut(s)	990, 1057, 1084, 1207, 1306
Bst6I	CTCTTC	1 cut(s)	1042
BstACI	GRCGYC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	990
BstC8I	GCNNGC	2 cut(s)	153, 1141
BstDEI	CTNAG	7 cut(s)	132, 186, 298, 439, 840, 880, 889
BstDSI	CCRYGG	2 cut(s)	327, 1478
BstEII	GGTNACC	1 cut(s)	1253
BstENI	CCTNNNNNAGG	1 cut(s)	1337
BstF5I	GGATG	5 cut(s)	497, 565, 682, 971, 1120
BstKTI	GATC	6 cut(s)	391, 750, 817, 927, 943, 1448
BstMAI	GTCTC	3 cut(s)	281, 1039, 1399
BstMBI	GATC	6 cut(s)	388, 747, 814, 924, 940, 1445
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 314, 323
BstNSI	RCATGY	1 cut(s)	1267
BstPI	GGTNACC	1 cut(s)	1253
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	673
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	1 cut(s)	814
BstXI	CCANNNNNNTGG	1 cut(s)	1469
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	5 cut(s)	222, 453, 1280, 1461, 1483
BtgI	CCRYGG	2 cut(s)	327, 1478
BtgZI	GCGATG	1 cut(s)	1440
BtsCI	GGATG	5 cut(s)	497, 565, 682, 971, 1120
BtsI	GCAGTG	1 cut(s)	957
BtsIMutI	CAGTG	4 cut(s)	671, 888, 957, 1080
Cac8I	GCNNGC	2 cut(s)	153, 1141
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	991, 1203
CviQI	GTAC	2 cut(s)	991, 1203
DdeI	CTNAG	7 cut(s)	132, 186, 298, 439, 840, 880, 889
DpnI	GATC	6 cut(s)	390, 749, 816, 926, 942, 1447
DpnII	GATC	6 cut(s)	388, 747, 814, 924, 940, 1445
EaeI	YGGCCR	3 cut(s)	220, 451, 1481
Eam1104I	CTCTTC	1 cut(s)	1042
EarI	CTCTTC	1 cut(s)	1042
Eco130I	CCWWGG	2 cut(s)	547, 1478
Eco32I	GATATC	3 cut(s)	508, 855, 1180
Eco57I	CTGAAG	1 cut(s)	303
Eco91I	GGTNACC	1 cut(s)	1253
EcoNI	CCTNNNNNAGG	1 cut(s)	1337
EcoO65I	GGTNACC	1 cut(s)	1253
EcoRV	GATATC	3 cut(s)	508, 855, 1180
EcoT14I	CCWWGG	2 cut(s)	547, 1478
EcoT22I	ATGCAT	1 cut(s)	1269
ErhI	CCWWGG	2 cut(s)	547, 1478
Esp3I	CGTCTC	1 cut(s)	1399
FalI	AAGNNNNNCTT	4 cut(s)	450, 482, 623, 655
FaqI	GGGAC	3 cut(s)	410, 931, 1356
FauNDI	CATATG	2 cut(s)	280, 1318
FbaI	TGATCA	1 cut(s)	924
Fnu4HI	GCNGC	1 cut(s)	687
FokI	GGATG	5 cut(s)	504, 572, 689, 978, 1127
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	2 cut(s)	812, 1196
GluI	GCNGC	1 cut(s)	687
GsuI	CTGGAG	2 cut(s)	819, 1158
HaeIII	GGCC	5 cut(s)	222, 453, 1280, 1461, 1483
HgaI	GACGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	399
HincII	GTYRAC	2 cut(s)	1063, 1290
HindII	GTYRAC	2 cut(s)	1063, 1290
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	4 cut(s)	90, 296, 1156, 1216
HpaI	GTTAAC	1 cut(s)	1063
HphI	GGTGA	3 cut(s)	305, 934, 1440
Hpy166II	GTNNAC	5 cut(s)	809, 1063, 1087, 1290, 1371
Hpy188I	TCNGA	6 cut(s)	189, 388, 617, 747, 1093, 1387
Hpy188III	TCNNGA	4 cut(s)	122, 321, 1175, 1336
Hpy8I	GTNNAC	5 cut(s)	809, 1063, 1087, 1290, 1371
HpyCH4III	ACNGT	5 cut(s)	990, 1057, 1084, 1207, 1306
HpyCH4V	TGCA	6 cut(s)	587, 916, 1143, 1229, 1267, 1439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 314, 323
HpyF3I	CTNAG	7 cut(s)	132, 186, 298, 439, 840, 880, 889
Hsp92I	GRCGYC	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	924
KspAI	GTTAAC	1 cut(s)	1063
Kzo9I	GATC	6 cut(s)	388, 747, 814, 924, 940, 1445
LmnI	GCTCC	6 cut(s)	323, 530, 772, 838, 1018, 1242
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	6 cut(s)	35, 482, 542, 550, 1105, 1276
MaeI	CTAG	2 cut(s)	812, 1196
MaeIII	GTNAC	6 cut(s)	293, 433, 697, 1096, 1222, 1253
MalI	GATC	6 cut(s)	390, 749, 816, 926, 942, 1447
MboI	GATC	6 cut(s)	388, 747, 814, 924, 940, 1445
MboII	GAAGA	9 cut(s)	31, 95, 267, 605, 723, 889, 1022, 1029, 1478
MfeI	CAATTG	1 cut(s)	1101
MflI	RGATCY	1 cut(s)	814
MlsI	TGGCCA	3 cut(s)	222, 453, 1483
MluNI	TGGCCA	3 cut(s)	222, 453, 1483
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	172, 195, 412, 993, 1343, 1371
Mox20I	TGGCCA	3 cut(s)	222, 453, 1483
Mph1103I	ATGCAT	1 cut(s)	1269
MscI	TGGCCA	3 cut(s)	222, 453, 1483
MseI	TTAA	9 cut(s)	311, 468, 516, 1023, 1062, 1074, 1184, 1209, 1401
MslI	CAYNNNNRTG	1 cut(s)	867
Msp20I	TGGCCA	3 cut(s)	222, 453, 1483
MspCI	CTTAAG	1 cut(s)	467
MunI	CAATTG	1 cut(s)	1101
MwoI	GCNNNNNNNGC	3 cut(s)	148, 314, 323
NcoI	CCATGG	1 cut(s)	1478
NdeI	CATATG	2 cut(s)	280, 1318
NdeII	GATC	6 cut(s)	388, 747, 814, 924, 940, 1445
NlaIV	GGNNCC	4 cut(s)	7, 325, 768, 1314
NmuCI	GTSAC	2 cut(s)	293, 1096
NsiI	ATGCAT	1 cut(s)	1269
NspI	RCATGY	1 cut(s)	1267
PfeI	GAWTC	3 cut(s)	90, 1156, 1216
PflMI	CCANNNNNTGG	2 cut(s)	218, 1490
PkrI	GCNGC	1 cut(s)	688
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PshBI	ATTAAT	2 cut(s)	1074, 1401
PspEI	GGTNACC	1 cut(s)	1253
PspN4I	GGNNCC	4 cut(s)	7, 325, 768, 1314
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	2 cut(s)	992, 1204
RsaNI	GTAC	2 cut(s)	991, 1203
RseI	CAYNNNNRTG	1 cut(s)	867
SaqAI	TTAA	9 cut(s)	311, 468, 516, 1023, 1062, 1074, 1184, 1209, 1401
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	6 cut(s)	388, 747, 814, 924, 940, 1445
SchI	GAGTC	1 cut(s)	290
SfaNI	GCATC	6 cut(s)	35, 482, 542, 550, 1105, 1276
SfcI	CTRYAG	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	867
SmlI	CTYRAG	2 cut(s)	122, 467
SmoI	CTYRAG	2 cut(s)	122, 467
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	812, 1196
StyI	CCWWGG	2 cut(s)	547, 1478
TaaI	ACNGT	5 cut(s)	990, 1057, 1084, 1207, 1306
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	3 cut(s)	90, 1156, 1216
Tru1I	TTAA	9 cut(s)	311, 468, 516, 1023, 1062, 1074, 1184, 1209, 1401
Tru9I	TTAA	9 cut(s)	311, 468, 516, 1023, 1062, 1074, 1184, 1209, 1401
TscAI	CASTG	4 cut(s)	678, 888, 964, 1087
TseFI	GTSAC	2 cut(s)	293, 1096
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	2 cut(s)	293, 1096
TspRI	CASTG	4 cut(s)	678, 888, 964, 1087
Van91I	CCANNNNNTGG	2 cut(s)	218, 1490
Vha464I	CTTAAG	1 cut(s)	467
VspI	ATTAAT	2 cut(s)	1074, 1401
XagI	CCTNNNNNAGG	1 cut(s)	1337
XapI	RAATTY	3 cut(s)	334, 740, 1324
XceI	RCATGY	1 cut(s)	1267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1012
XspI	CTAG	2 cut(s)	812, 1196
Zsp2I	ATGCAT	1 cut(s)	1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.