Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005529

Physical Location & Seq

Genomic Coordinates Forward (+)

15836872 .. 15840288

Gene Structure 3417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGGTTCCTTCCCAAAGTCAATGAAATCTGCAATTTTCTTCATAATTTCATCACTTTTTCTGGTTTCTGCAACTACCCAAGAAGAAGGATTCATATCTGTGGTCGTATCCAGAAAGGGTCTTGATTTCACCAAGGACTTGCTGATAGAACAGGCTGTTTCCTCCATAATCCCCCTTCAGCTGCCCGAAATCGAAAAGTCTATCAAAATCCCACTTGTTGGCAAAGTTGATATTGTTCTGTCGAATATCTTAATTTACAATGTGGAAATTGGCTCTTCATACGTGGAGACTGGTGACTCTGGTATTGCTTTAATTGCTTCAGGAGCCACTGCAAATTTGAGCATGGATTGGAAGTATACTTATAGCACTTGGTTATTTGATATTTCAGATAGTGGGCATGCCTCCATTCAGGTTGAAGGTATGGAAGTGGGTGTTACCTTAGCTTTGAAGGACCAAGAAGGAACTCTTAAGCTGTCTGTTTTGGAATGCGGTTGCTATGTGAAGGATATCGCCATTAAGTTAGATGGTGGAGCATCTTGGCTTTACCAAGGATTAGTGGATGCCTTTAAAGGCCAAATAATTTCTGCAGTTGAAGATAATATTTCCAATAAAGTCAGAGAAGGAATAGTGAAGCTTGACAGTTTACTACAATCGCTTCCAAAACAAATTGCACTGGATGATATTGCAGCTTTGAATGTTACATTTGTGGGCAATCCTGTGTTGAGTAATTCTTCCATTGAATTTCAGATAAATGGTCTTTTCACGGCTCTTGATGATAATTCTGCTTCCAGTTTATACAATAAAGGTTCACTAGATCCTGTTCCCTGCAATGCTCCAGCTAAGATGGTTGAGATATCATTACATGAAAATGTCTTTAGCTCAGTGTCCTTAGTTTTCTACAACGCCAATTATATGCAACGGACAATCAACAAGATACCAGATCAGTCCCTTCTGAACACTGCTCAGTGGAAACACATTGTTCCTCAACTGTACAAGCAATACCCAGATAAAGATATGGAACTTAATATTTCTGTATCTTCTCCACCAATAATAAGAGTTGCGAACAATGGCATTGATTTCACTGTTTACTCTGATGTGACAATTGGTGTCGTGGATGATGATGAAGTAATATCAGTTGCTTGCATATCATTGGAGATTCATGCTTCATGTTCTCCAAAGATCTCGATGAACAAACTAGCTGGCATTGTTAAATTGAATGATATTACAGCTTCCTTGAAGTGGAGTGAAATTGGTAACCTACACATGCGTCTCGTTCAGGCCATATTGTCAACAATCCTCAAAACTGTTGTTGTGCCGTATTTGAATTTATACCTTTGGAAAGGACTACCTTTACCACTTCCTCGTGGCTTTACACTCAAGAATTCTGAGATCCTCTCCACCAATTCAAGACTTGGAATATTCAGCGATGTTGAGTTTGTAGAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

483

Amino Acids

52.54

Weight (kDa)

4.85

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23590 FvH4_3g23590 FvH4_3g23590 FvH4_3g23590
malus_domestica	MD03G1192700.v1.1
prunus_persica	Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1 Prupe.4G224100_v2.0.a1
pyrus_communis	pycom03g14500
rosa_chinensis	RchiOBHm_Chr5g0041601
rosa_laevigata	RLG00000034085
rosa_multiflora	Rmu_co8479759.1_g000001 Rmu_sc0000861.1_g000013 Rmu_sc0011648.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029690 Rroxscaffold_1G00038880 Rroxscaffold_2G00117350 Rroxscaffold_2G00128820 Rroxscaffold_4G00323640
rosa_rugosa	Rorug05G0194000 Rorug05G0194000
rosa_samantha	Rh5AG279600 Rh5BG284200 Rh5BG285000 Rh5CG316900 Rh5DG293800
rosa_wichuraiana	Rw5G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	356
AciI	CCGC	1 cut(s)	489
AclWI	GGATC	2 cut(s)	809, 1384
AcsI	RAATTY	4 cut(s)	334, 740, 1324, 1381
AcuI	CTGAAG	2 cut(s)	161, 303
AfaI	GTAC	1 cut(s)	992
AfiI	CCNNNNNNNGG	2 cut(s)	218, 1239
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	9 cut(s)	416, 448, 593, 694, 740, 1216, 1237, 1324, 1407
AluBI	AGCT	9 cut(s)	181, 443, 472, 634, 689, 839, 879, 1199, 1229
AluI	AGCT	9 cut(s)	181, 443, 472, 634, 689, 839, 879, 1199, 1229
Alw26I	GTCTC	2 cut(s)	281, 1274
AlwI	GGATC	2 cut(s)	809, 1384
AoxI	GGCC	2 cut(s)	571, 1278
ApeKI	GCWGC	2 cut(s)	181, 686
ApoI	RAATTY	4 cut(s)	334, 740, 1324, 1381
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	121, 305
AvaII	GGWCC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	1362
BbvI	GCAGC	2 cut(s)	168, 698
BccI	CCATC	2 cut(s)	518, 838
BceAI	ACGGC	2 cut(s)	780, 1300
BciVI	GTATCC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	281, 1274
BfaI	CTAG	2 cut(s)	812, 1196
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	1179
BisI	GCNGC	2 cut(s)	182, 687
BlsI	GCNGC	2 cut(s)	183, 688
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	7, 325
BmsI	GCATC	2 cut(s)	542, 550
BplI	GAGNNNNNCTC	2 cut(s)	1379, 1411
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	1361
BsaAI	YACGTR	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	132, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 1239
Bse1I	ACTGG	3 cut(s)	295, 678, 789
Bse3DI	GCAATG	1 cut(s)	835
Bse8I	GATNNNNATC	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	132, 547
BseGI	GGATG	3 cut(s)	565, 682, 1120
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	218, 1239
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	3 cut(s)	894, 977, 1377
BseNI	ACTGG	3 cut(s)	295, 678, 789
BseXI	GCAGC	2 cut(s)	168, 698
BshFI	GGCC	2 cut(s)	573, 1280
BslFI	GGGAC	1 cut(s)	931
BslI	CCNNNNNNNGG	2 cut(s)	218, 1239
BsmAI	GTCTC	2 cut(s)	281, 1274
BsmBI	CGTCTC	1 cut(s)	1274
BsmFI	GGGAC	1 cut(s)	931
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	573, 1280
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	4 cut(s)	814, 940, 1179, 1389
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	2 cut(s)	573, 1280
BspCNI	CTCAG	3 cut(s)	893, 976, 1378
BspLI	GGNNCC	2 cut(s)	7, 325
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	2 cut(s)	809, 1384
BspQI	GCTCTTC	1 cut(s)	280
BspTI	CTTAAG	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	835
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	3 cut(s)	295, 678, 789
BssECI	CCNNGG	2 cut(s)	132, 547
BssMI	GATC	4 cut(s)	814, 940, 1179, 1389
BssNAI	GTATAC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	1362
BssT1I	CCWWGG	2 cut(s)	132, 547
Bst1107I	GTATAC	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	1362
Bst4CI	ACNGT	4 cut(s)	641, 990, 1084, 1306
Bst6I	CTCTTC	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	990
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	3 cut(s)	399, 1141, 1201
BstDEI	CTNAG	6 cut(s)	439, 840, 880, 889, 963, 1386
BstEII	GGTNACC	1 cut(s)	1253
BstF5I	GGATG	3 cut(s)	565, 682, 1120
BstKTI	GATC	4 cut(s)	817, 943, 1182, 1392
BstMAI	GTCTC	2 cut(s)	281, 1274
BstMBI	GATC	4 cut(s)	814, 940, 1179, 1389
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 323
BstNSI	RCATGY	2 cut(s)	401, 1267
BstPI	GGTNACC	1 cut(s)	1253
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	168, 698
BstX2I	RGATCY	3 cut(s)	814, 1179, 1389
BstYI	RGATCY	3 cut(s)	814, 1179, 1389
BstZ17I	GTATAC	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	573, 1280
BtgZI	GCGATG	1 cut(s)	1440
BtsCI	GGATG	3 cut(s)	565, 682, 1120
BtsI	GCAGTG	2 cut(s)	327, 957
BtsIMutI	CAGTG	6 cut(s)	327, 671, 888, 957, 971, 1080
Cac8I	GCNNGC	3 cut(s)	399, 1141, 1201
Cfr13I	GGNCC	1 cut(s)	451
CseI	GACGC	1 cut(s)	1256
Csp6I	GTAC	1 cut(s)	991
CviAII	CATG	6 cut(s)	343, 398, 863, 1160, 1167, 1264
CviQI	GTAC	1 cut(s)	991
DdeI	CTNAG	6 cut(s)	439, 840, 880, 889, 963, 1386
DpnI	GATC	4 cut(s)	816, 942, 1181, 1391
DpnII	GATC	4 cut(s)	814, 940, 1179, 1389
DraI	TTTAAA	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	2 cut(s)	132, 547
Eco32I	GATATC	2 cut(s)	508, 855
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	161, 303
Eco91I	GGTNACC	1 cut(s)	1253
EcoO65I	GGTNACC	1 cut(s)	1253
EcoRI	GAATTC	1 cut(s)	1381
EcoRV	GATATC	2 cut(s)	508, 855
EcoT14I	CCWWGG	2 cut(s)	132, 547
ErhI	CCWWGG	2 cut(s)	132, 547
Esp3I	CGTCTC	1 cut(s)	1274
FaeI	CATG	6 cut(s)	346, 401, 866, 1163, 1170, 1267
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	931
FatI	CATG	6 cut(s)	342, 397, 862, 1159, 1166, 1263
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	182, 687
FokI	GGATG	3 cut(s)	572, 689, 1127
Fsp4HI	GCNGC	2 cut(s)	182, 687
FspBI	CTAG	2 cut(s)	812, 1196
GluI	GCNGC	2 cut(s)	182, 687
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	573, 1280
HgaI	GACGC	1 cut(s)	1256
Hin1II	CATG	6 cut(s)	346, 401, 866, 1163, 1170, 1267
HincII	GTYRAC	1 cut(s)	1290
HindII	GTYRAC	1 cut(s)	1290
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	3 cut(s)	90, 296, 1156
HphI	GGTGA	2 cut(s)	121, 305
Hpy166II	GTNNAC	5 cut(s)	357, 644, 809, 1087, 1290
Hpy188I	TCNGA	6 cut(s)	388, 617, 747, 954, 1093, 1387
Hpy188III	TCNNGA	7 cut(s)	111, 122, 321, 770, 1183, 1378, 1407
Hpy8I	GTNNAC	5 cut(s)	357, 644, 809, 1087, 1290
HpyCH4III	ACNGT	4 cut(s)	641, 990, 1084, 1306
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	9 cut(s)	32, 71, 332, 587, 671, 686, 828, 916, 1143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 323
HpyF3I	CTNAG	6 cut(s)	439, 840, 880, 889, 963, 1386
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	6 cut(s)	346, 401, 866, 1163, 1170, 1267
Kzo9I	GATC	4 cut(s)	814, 940, 1179, 1389
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	3 cut(s)	323, 530, 838
Lsp1109I	GCAGC	2 cut(s)	168, 698
LweI	GCATC	2 cut(s)	542, 550
MaeI	CTAG	2 cut(s)	812, 1196
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	5 cut(s)	293, 433, 697, 1096, 1253
MalI	GATC	4 cut(s)	816, 942, 1181, 1391
MboI	GATC	4 cut(s)	814, 940, 1179, 1389
MboII	GAAGA	6 cut(s)	31, 95, 267, 605, 723, 1029
MfeI	CAATTG	1 cut(s)	1101
MflI	RGATCY	3 cut(s)	814, 1179, 1389
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	172, 412, 993, 1307, 1371, 1403
MseI	TTAA	7 cut(s)	251, 311, 468, 516, 567, 1023, 1209
MslI	CAYNNNNRTG	2 cut(s)	98, 867
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	467
MunI	CAATTG	1 cut(s)	1101
Mva1269I	GAATGC	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	314, 323
NdeII	GATC	4 cut(s)	814, 940, 1179, 1389
NlaIII	CATG	6 cut(s)	346, 401, 866, 1163, 1170, 1267
NlaIV	GGNNCC	2 cut(s)	7, 325
NmuCI	GTSAC	2 cut(s)	293, 1096
NspI	RCATGY	2 cut(s)	401, 1267
PaeI	GCATGC	1 cut(s)	401
PciSI	GCTCTTC	1 cut(s)	280
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	90, 1156
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	183, 688
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	1253
PspN4I	GGNNCC	2 cut(s)	7, 325
PspPI	GGNCC	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	3 cut(s)	814, 1179, 1389
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	992
RsaNI	GTAC	1 cut(s)	991
RseI	CAYNNNNRTG	2 cut(s)	98, 867
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	7 cut(s)	251, 311, 468, 516, 567, 1023, 1209
SatI	GCNGC	2 cut(s)	182, 687
Sau3AI	GATC	4 cut(s)	814, 940, 1179, 1389
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	290
SfaNI	GCATC	2 cut(s)	542, 550
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	98, 867
SmlI	CTYRAG	2 cut(s)	467, 1376
SmoI	CTYRAG	2 cut(s)	467, 1376
SphI	GCATGC	1 cut(s)	401
SsiI	CCGC	1 cut(s)	489
SspI	AATATT	3 cut(s)	601, 1027, 1419
SspMI	CTAG	2 cut(s)	812, 1196
StyI	CCWWGG	2 cut(s)	132, 547
TaaI	ACNGT	4 cut(s)	641, 990, 1084, 1306
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	3 cut(s)	192, 242, 1184
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	2 cut(s)	90, 1156
Tru1I	TTAA	7 cut(s)	251, 311, 468, 516, 567, 1023, 1209
Tru9I	TTAA	7 cut(s)	251, 311, 468, 516, 567, 1023, 1209
TscAI	CASTG	6 cut(s)	334, 678, 888, 964, 971, 1087
TseFI	GTSAC	2 cut(s)	293, 1096
TseI	GCWGC	2 cut(s)	181, 686
Tsp45I	GTSAC	2 cut(s)	293, 1096
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	6 cut(s)	334, 678, 888, 964, 971, 1087
Van91I	CCANNNNNTGG	1 cut(s)	218
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	4 cut(s)	334, 740, 1324, 1381
XceI	RCATGY	2 cut(s)	401, 1267
XmiI	GTMKAC	1 cut(s)	356
XspI	CTAG	2 cut(s)	812, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.