FvH4_3g23651

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018004
Physical Location & Seq
Forward (+)
16750620 .. 16751337
718 bp
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UTR
Exon/CDS
Intron
FvH4_3g23651.t1

Sequence Viewer

Length: 477 bp
ATGGAATCAACCGGCAGTACGAGTTCGCAAAGTTCAAGCTCTGTTCCAAATGTTCCAGACCCAGATCATTCGGAGCAATCTTTACACCCTACATTACGGGTTGCACCTGAACCAGAACATGTAGGCAACTCATCCTATAAGAGACAGAAAAGATGTCTAGCTTGGCCACATTACACAATGATGAAGAAGGAGGATGGTGCGACTGATAGGACTGATAAAGCCATCTGCAACTATTGTGGTACCTCCATAAGTTGTGACTCTAGGAGGAACGGAACCAGTGGCCTCACGAAACATCTTAAGAAGGTCTGCAAGAAATTCCCGTTATGTGAGAAAATCCCATTGCGTGAGAAACGTGACAAAAGGCAAAGGACCTTGGCTTTTCAGAAGACTGAAGATGGACTTCAGTTGGTGCCATTTGAATCTAATCAAGACAAAAGGCAGAGGAACTTGTACTCCAAAAATGGTATGCTTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

159

Amino Acids

17.93

Weight (kDa)

9.46

Isoelectric Point (pI)

66.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-BED PF02892 55 - 104 3e-07 BED zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018004)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23651
prunus_persica Prupe.3G104400_v2.0.a1 Prupe.4G218200_v2.0.a1 Prupe.4G218200_v2.0.a1
rosa_multiflora Rmu_sc0007415.1_g000035
rosa_samantha Rh1AG225100 Rh1CG209900 Rh2BG198500 Rh5AG299700 Rh7AG423800
rosa_wichuraiana Rw4G032200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 2 cut(s) 239, 409
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 2 cut(s) 386, 411
AfaI GTAC 3 cut(s) 19, 241, 452
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 2 cut(s) 36, 419
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
AluBI AGCT 2 cut(s) 39, 161
AluI AGCT 2 cut(s) 39, 161
Alw26I GTCTC 1 cut(s) 136
AoxI GGCC 2 cut(s) 164, 280
ApoI RAATTY 1 cut(s) 314
Asp718I GGTACC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 369
AvaII GGWCC 1 cut(s) 369
BalI TGGCCA 1 cut(s) 166
BanI GGYRCC 2 cut(s) 239, 409
BbsI GAAGAC 1 cut(s) 392
BccI CCATC 3 cut(s) 188, 230, 389
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 2 cut(s) 158, 261
BfrI CTTAAG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 3 cut(s) 241, 274, 411
BpiI GAAGAC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 131, 199
BseMI GCAATG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 276
BshFI GGCC 2 cut(s) 166, 282
BshNI GGYRCC 2 cut(s) 239, 409
BsiSI CCGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 2 cut(s) 166, 282
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 2 cut(s) 166, 282
BspLI GGNNCC 3 cut(s) 241, 274, 411
BspT107I GGYRCC 2 cut(s) 239, 409
BspTI CTTAAG 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 296
BstF5I GGATG 2 cut(s) 131, 199
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 166, 282
BtsCI GGATG 2 cut(s) 131, 199
BtsIMutI CAGTG 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 369
Csp6I GTAC 3 cut(s) 18, 240, 451
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 1 cut(s) 119
CviJI RGCY 6 cut(s) 39, 161, 166, 221, 282, 377
CviKI_1 RGCY 6 cut(s) 39, 161, 166, 221, 282, 377
CviQI GTAC 3 cut(s) 18, 240, 451
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 386, 411
EcoO109I RGGNCCY 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 1 cut(s) 122
FaiI YATR 5 cut(s) 120, 138, 248, 325, 467
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 1 cut(s) 118
FokI GGATG 2 cut(s) 118, 206
FspBI CTAG 2 cut(s) 158, 261
HaeIII GGCC 2 cut(s) 166, 282
HapII CCGG 1 cut(s) 12
Hin1II CATG 1 cut(s) 122
HinfI GANTC 3 cut(s) 5, 257, 419
HpaII CCGG 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 73, 384
Hpy188III TCNNGA 3 cut(s) 56, 286, 428
HpyAV CCTTC 2 cut(s) 181, 295
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 3 cut(s) 104, 228, 309
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 1 cut(s) 122
KpnI GGTACC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 25, 69, 75, 120, 126, 289
MaeI CTAG 2 cut(s) 158, 261
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 254, 353
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 3 cut(s) 196, 397, 404
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 1 cut(s) 314
MluNI TGGCCA 1 cut(s) 166
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 5 cut(s) 184, 253, 258, 293, 435
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 166
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 12
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 3 cut(s) 241, 274, 411
NmuCI GTSAC 2 cut(s) 254, 353
NspI RCATGY 1 cut(s) 122
PciI ACATGT 1 cut(s) 118
PfeI GAWTC 2 cut(s) 5, 419
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 369
PscI ACATGT 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 369
PspN4I GGNNCC 3 cut(s) 241, 274, 411
PspPI GGNCC 1 cut(s) 369
PspPPI RGGWCCY 1 cut(s) 369
RsaI GTAC 3 cut(s) 19, 241, 452
RsaNI GTAC 3 cut(s) 18, 240, 451
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 297
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 1 cut(s) 251
SetI ASST 7 cut(s) 41, 109, 163, 245, 306, 355, 374
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 314
SspMI CTAG 2 cut(s) 158, 261
StyI CCWWGG 1 cut(s) 372
TaiI ACGT 1 cut(s) 355
TasI AATT 1 cut(s) 314
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 2 cut(s) 5, 419
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 2 cut(s) 254, 353
Tsp45I GTSAC 2 cut(s) 254, 353
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 2 cut(s) 285, 462
TspRI CASTG 1 cut(s) 283
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 1 cut(s) 314
XceI RCATGY 1 cut(s) 122
XspI CTAG 2 cut(s) 158, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.