Rh2BG198500

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018004
Physical Location & Seq
Forward (+)
18209376 .. 18210327
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG198500.1

Sequence Viewer

Length: 477 bp
ATGAATTCTGAAAATCCCACAATTCCACCAAACAGTACCCAAGACACTACTAATAACCCCAACACCATTCCGATTCCGAGTGTGGAGCCTAATCCAACTGAACAAGGAGGAGCTGTACCTGCTCCACCTCCTCCTGTACCTTGTGTTAGAAAGAGGAAACCTGCTAGGAATGCCTCTGATGTGTGGAATCATTTCAAAAAGGTAGATGAGAATGGTGAGGATCCTAGATGCATTTGTAAGCATTGTGGGACCGACTATGCTTGTGATCCAAAAAGGAATGGCACTTCCACTTTGTGGAATCATGTGAGGAACCAATGCAAACGTTCTCCACTGAGAATTGATAAGAAACAAAAGCTCCTAGCTTTTGAAAAAAAGGATGGAGAAGCTGAACAAATTGGAGCTCCTCAAGGTGGATCTCAAGACAAAACTCAAGATGGAACTCAAGGTGGAACTCAAGTCTCTGATCAGACTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

158

Amino Acids

17.28

Weight (kDa)

8.54

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-BED PF02892 59 - 107 1.8e-07 BED zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018004)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23651
prunus_persica Prupe.3G104400_v2.0.a1 Prupe.4G218200_v2.0.a1 Prupe.4G218200_v2.0.a1
rosa_multiflora Rmu_sc0007415.1_g000035
rosa_samantha Rh1AG225100 Rh1CG209900 Rh2BG198500 Rh5AG299700 Rh7AG423800
rosa_wichuraiana Rw4G032200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 127, 169
AccB7I CCANNNNNTGG 1 cut(s) 294
AclI AACGTT 1 cut(s) 322
AclWI GGATC 4 cut(s) 215, 228, 260, 421
AcsI RAATTY 1 cut(s) 4
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 3 cut(s) 37, 117, 138
AfiI CCNNNNNNNGG 2 cut(s) 294, 410
AgsI TTSAA 2 cut(s) 196, 368
AluBI AGCT 5 cut(s) 113, 355, 362, 386, 401
AluI AGCT 5 cut(s) 113, 355, 362, 386, 401
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 4 cut(s) 215, 228, 260, 421
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 1 cut(s) 249
BamHI GGATCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 403
BccI CCATC 2 cut(s) 371, 428
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 3 cut(s) 165, 225, 359
BfuAI ACCTGC 2 cut(s) 127, 169
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 4 cut(s) 87, 222, 250, 311
BmsI GCATC 1 cut(s) 218
BpuEI CTTGAG 5 cut(s) 390, 402, 414, 426, 438
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 410
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 2 cut(s) 294, 410
BseMII CTCAG 1 cut(s) 323
BseRI GAGGAG 3 cut(s) 120, 123, 393
BsiHKAI GWGCWC 1 cut(s) 403
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 294, 410
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 4 cut(s) 220, 265, 413, 463
BspCNI CTCAG 1 cut(s) 324
BspLI GGNNCC 4 cut(s) 87, 222, 250, 311
BspMI ACCTGC 2 cut(s) 127, 169
BspPI GGATC 4 cut(s) 215, 228, 260, 421
BssMI GATC 4 cut(s) 220, 265, 413, 463
Bst4CI ACNGT 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 332, 471
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 4 cut(s) 223, 268, 416, 466
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 4 cut(s) 220, 265, 413, 463
BstMWI GCNNNNNNNGC 2 cut(s) 119, 170
BstX2I RGATCY 2 cut(s) 220, 413
BstYI RGATCY 2 cut(s) 220, 413
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 329
BveI ACCTGC 2 cut(s) 127, 169
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 36, 116, 137
CviAII CATG 1 cut(s) 302
CviJI RGCY 6 cut(s) 88, 113, 355, 362, 386, 401
CviKI_1 RGCY 6 cut(s) 88, 113, 355, 362, 386, 401
CviQI GTAC 3 cut(s) 36, 116, 137
DdeI CTNAG 2 cut(s) 332, 471
DpnI GATC 4 cut(s) 222, 267, 415, 465
DpnII GATC 4 cut(s) 220, 265, 413, 463
DraIII CACNNNGTG 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 401
EcoRI GAATTC 1 cut(s) 4
EcoT22I ATGCAT 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 1 cut(s) 305
FaiI YATR 2 cut(s) 258, 303
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 463
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 403
FspBI CTAG 3 cut(s) 165, 225, 359
Hin1II CATG 1 cut(s) 305
HinfI GANTC 3 cut(s) 73, 187, 298
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 6 cut(s) 10, 72, 78, 178, 463, 468
Hpy188III TCNNGA 2 cut(s) 419, 431
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 2 cut(s) 231, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 170
HpyF3I CTNAG 2 cut(s) 332, 471
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 4 cut(s) 220, 265, 413, 463
LmnI GCTCC 6 cut(s) 85, 110, 127, 360, 398, 406
LpnPI CCDG 3 cut(s) 132, 147, 174
LweI GCATC 1 cut(s) 218
MaeI CTAG 3 cut(s) 165, 225, 359
MaeII ACGT 1 cut(s) 322
MalI GATC 4 cut(s) 222, 267, 415, 465
MboI GATC 4 cut(s) 220, 265, 413, 463
MflI RGATCY 2 cut(s) 220, 413
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 4 cut(s) 4, 21, 336, 393
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 8 cut(s) 101, 138, 141, 147, 184, 211, 300, 414
Mph1103I ATGCAT 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 119, 170
NdeII GATC 4 cut(s) 220, 265, 413, 463
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 4 cut(s) 87, 222, 250, 311
NsiI ATGCAT 1 cut(s) 233
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 3 cut(s) 73, 187, 298
PflMI CCANNNNNTGG 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 403
Psp1406I AACGTT 1 cut(s) 322
PspN4I GGNNCC 4 cut(s) 87, 222, 250, 311
PspPI GGNCC 1 cut(s) 249
PsuI RGATCY 2 cut(s) 220, 413
RsaI GTAC 3 cut(s) 37, 117, 138
RsaNI GTAC 3 cut(s) 36, 116, 137
SacI GAGCTC 1 cut(s) 403
Sau3AI GATC 4 cut(s) 220, 265, 413, 463
Sau96I GGNCC 1 cut(s) 249
SduI GDGCHC 1 cut(s) 403
SfaNI GCATC 1 cut(s) 218
SinI GGWCC 1 cut(s) 249
SmlI CTYRAG 5 cut(s) 405, 417, 429, 441, 453
SmoI CTYRAG 5 cut(s) 405, 417, 429, 441, 453
Sse9I AATT 4 cut(s) 4, 21, 336, 393
SspMI CTAG 3 cut(s) 165, 225, 359
SstI GAGCTC 1 cut(s) 403
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 325
TaqII GACCGA 1 cut(s) 266
TasI AATT 4 cut(s) 4, 21, 336, 393
TfiI GAWTC 3 cut(s) 73, 187, 298
TscAI CASTG 1 cut(s) 336
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 336
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 249
XapI RAATTY 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 3 cut(s) 165, 225, 359
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.