Rh5AG299700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018004
Physical Location & Seq
Forward (+)
41932865 .. 41937547
4683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG299700.1

Sequence Viewer

Length: 480 bp
ATGTTGCTGGGAGACGGAGGAGGCTTGGGTGGCGAGAGCAGTGACGAGGGAGATTCGGGCTTCGAGAGCGGACATGGTCCTTCTTCTCTGCGGCGGAGAAGATATGGCTGCGCGGTTGGCGGCCATGGAGATGTTAGCCTGTTAGAGTTTCGTGACAGGGAGCTTGAAGATTCTATGAATTCTGAAAATCCCACAATTCCACCAAACAGTACCCAAGACACCACTAATAACCCCAACACCATTCCTATTCCGAGTGTGGAGCCTAATCCAACTGAACAAGGAGGAGCTGTACCTGCTCCACCTCCTCCTGTACCTTGTGTTAGAAAGAGGAAACCTGCTAGGAATGCCTCTGATGTGTGGAATCATTTCAAAAAGGTAGATGAGAATGCTGAACAAATTGGAGCTCCTCAAGGTGGATCTCAAGACAAAACTCAAGATGGAACTCAAGGTGGAACTCAAGTCTCTGATCAGACTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.73

Weight (kDa)

4.81

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018004)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23651
prunus_persica Prupe.3G104400_v2.0.a1 Prupe.4G218200_v2.0.a1 Prupe.4G218200_v2.0.a1
rosa_multiflora Rmu_sc0007415.1_g000035
rosa_samantha Rh1AG225100 Rh1CG209900 Rh2BG198500 Rh5AG299700 Rh7AG423800
rosa_wichuraiana Rw4G032200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 301, 343
AccBSI CCGCTC 1 cut(s) 69
AccII CGCG 1 cut(s) 113
AciI CCGC 5 cut(s) 69, 91, 94, 113, 120
AclWI GGATC 1 cut(s) 424
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 3 cut(s) 211, 291, 312
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 2 cut(s) 167, 370
AluBI AGCT 3 cut(s) 163, 287, 404
AluI AGCT 3 cut(s) 163, 287, 404
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 2 cut(s) 6, 466
AlwI GGATC 1 cut(s) 424
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 431
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 6, 466
BfaI CTAG 1 cut(s) 339
BfuAI ACCTGC 2 cut(s) 301, 343
BisI GCNGC 3 cut(s) 92, 109, 121
BlsI GCNGC 3 cut(s) 93, 110, 122
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 261
BpuEI CTTGAG 5 cut(s) 393, 405, 417, 429, 441
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 413
BseRI GAGGAG 4 cut(s) 33, 294, 297, 396
BseXI GCAGC 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 6, 466
BsmBI CGTCTC 1 cut(s) 6
BsmI GAATGC 2 cut(s) 349, 391
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 2 cut(s) 416, 466
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 5 cut(s) 69, 91, 94, 113, 120
BspANI GGCC 1 cut(s) 123
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 261
BspMI ACCTGC 2 cut(s) 301, 343
BspPI GGATC 1 cut(s) 424
BsrBI CCGCTC 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 416, 466
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 419, 469
BstMAI GTCTC 2 cut(s) 6, 466
BstMBI GATC 2 cut(s) 416, 466
BstMWI GCNNNNNNNGC 5 cut(s) 30, 66, 117, 293, 344
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
BveI ACCTGC 2 cut(s) 301, 343
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 3 cut(s) 210, 290, 311
CviAII CATG 2 cut(s) 74, 125
CviJI RGCY 9 cut(s) 24, 60, 108, 123, 138, 163, 262, 287, 404
CviKI_1 RGCY 9 cut(s) 24, 60, 108, 123, 138, 163, 262, 287, 404
CviQI GTAC 3 cut(s) 210, 290, 311
DdeI CTNAG 1 cut(s) 474
DpnI GATC 2 cut(s) 418, 468
DpnII GATC 2 cut(s) 416, 466
EaeI YGGCCR 1 cut(s) 121
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 2 cut(s) 77, 128
FaiI YATR 4 cut(s) 75, 105, 126, 176
FatI CATG 2 cut(s) 73, 124
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 92, 109, 121
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 3 cut(s) 92, 109, 121
FspBI CTAG 1 cut(s) 339
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 92, 109, 121
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 1 cut(s) 123
HhaI GCGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 77, 128
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 3 cut(s) 53, 170, 361
Hpy188I TCNGA 5 cut(s) 184, 252, 352, 466, 471
Hpy188III TCNNGA 4 cut(s) 64, 152, 422, 434
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 66, 117, 293, 344
HpyF3I CTNAG 1 cut(s) 474
Hsp92II CATG 2 cut(s) 77, 128
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 2 cut(s) 416, 466
LmnI GCTCC 6 cut(s) 160, 259, 284, 301, 401, 409
LpnPI CCDG 5 cut(s) 142, 152, 306, 321, 348
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 41, 152
MalI GATC 2 cut(s) 418, 468
MbiI CCGCTC 1 cut(s) 69
MboI GATC 2 cut(s) 416, 466
MboII GAAGA 3 cut(s) 75, 111, 179
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 3 cut(s) 178, 195, 396
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 9 cut(s) 11, 14, 40, 275, 312, 315, 321, 358, 417
MroXI GAANNNNTTC 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 129
Mva1269I GAATGC 2 cut(s) 349, 391
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 5 cut(s) 30, 66, 117, 293, 344
NcoI CCATGG 1 cut(s) 124
NdeII GATC 2 cut(s) 416, 466
NlaIII CATG 2 cut(s) 77, 128
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 2 cut(s) 41, 152
PctI GAATGC 2 cut(s) 349, 391
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 3 cut(s) 53, 170, 361
PflFI GACNNNGTC 1 cut(s) 75
PkrI GCNGC 3 cut(s) 93, 110, 122
Psp124BI GAGCTC 1 cut(s) 406
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 416
PsyI GACNNNGTC 1 cut(s) 75
RsaI GTAC 3 cut(s) 211, 291, 312
RsaNI GTAC 3 cut(s) 210, 290, 311
RseI CAYNNNNRTG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 406
SatI GCNGC 3 cut(s) 92, 109, 121
Sau3AI GATC 2 cut(s) 416, 466
Sau96I GGNCC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 406
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 5 cut(s) 408, 420, 432, 444, 456
SmoI CTYRAG 5 cut(s) 408, 420, 432, 444, 456
Sse9I AATT 3 cut(s) 178, 195, 396
SsiI CCGC 5 cut(s) 69, 91, 94, 113, 120
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 406
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 63
TasI AATT 3 cut(s) 178, 195, 396
TauI GCSGC 2 cut(s) 94, 123
TfiI GAWTC 3 cut(s) 53, 170, 361
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 2 cut(s) 41, 152
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 2 cut(s) 41, 152
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 46
Tth111I GACNNNGTC 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.