Rw4G032200

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
59336578 .. 59340434
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G032200.1

Sequence Viewer

Length: 288 bp
ATGAATTCTGAAAATCCCACAATTCCACCAAACAGTACCCAAGACACTACTAATAACCCCAACGCCATTCCTATTCCGAGTGCGGAGCCTAATCCAACTGAACAAGGAGGAGCTGTACCTGCTCCACCTCCTCCTCTGAACAAAATGGAGCTCCTCAAGGTGGATCTCAAGACAAAACTCAAGATGGAACTCAAGGTGGAACTCAAGTCTCTGATCAGACTAAGTAAAAGTGAAAGGAGAATGCGAGCTCTGCGCTTATCCAAGCATGCGAAGCCAAGTTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.49

Weight (kDa)

9.99

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018004)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 2 cut(s) 37, 117
AfiI CCNNNNNNNGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 113, 151, 248
AluI AGCT 3 cut(s) 113, 151, 248
Alw21I GWGCWC 2 cut(s) 153, 250
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 153, 250
Bbv12I GWGCWC 2 cut(s) 153, 250
BccI CCATC 1 cut(s) 178
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 87
BpuEI CTTGAG 5 cut(s) 140, 152, 164, 176, 188
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 160
BseRI GAGGAG 4 cut(s) 120, 123, 123, 143
BsiHKAI GWGCWC 2 cut(s) 153, 250
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 153, 250
Bsp143I GATC 2 cut(s) 163, 213
BspACI CCGC 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 1 cut(s) 171
BssMI GATC 2 cut(s) 163, 213
Bst4CI ACNGT 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 246, 267
BstDEI CTNAG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 2 cut(s) 166, 216
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 163, 213
BstMWI GCNNNNNNNGC 3 cut(s) 119, 250, 271
BstNSI RCATGY 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 246, 267
CfoI GCGC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 36, 116
CviAII CATG 1 cut(s) 266
CviJI RGCY 5 cut(s) 88, 113, 151, 248, 274
CviKI_1 RGCY 5 cut(s) 88, 113, 151, 248, 274
CviQI GTAC 2 cut(s) 36, 116
DdeI CTNAG 1 cut(s) 221
DpnI GATC 2 cut(s) 165, 215
DpnII GATC 2 cut(s) 163, 213
Ecl136II GAGCTC 2 cut(s) 151, 248
Eco24I GRGCYC 2 cut(s) 153, 250
Eco53kI GAGCTC 2 cut(s) 151, 248
EcoICRI GAGCTC 2 cut(s) 151, 248
EcoRI GAATTC 1 cut(s) 4
EcoT38I GRGCYC 2 cut(s) 153, 250
FaeI CATG 1 cut(s) 269
FaiI YATR 1 cut(s) 267
FatI CATG 1 cut(s) 265
FbaI TGATCA 1 cut(s) 213
FriOI GRGCYC 2 cut(s) 153, 250
GlaI GCGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 255
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
Hpy188I TCNGA 5 cut(s) 10, 78, 138, 213, 218
Hpy188III TCNNGA 2 cut(s) 169, 181
HpyCH4III ACNGT 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 250, 271
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 163, 213
LmnI GCTCC 5 cut(s) 85, 110, 127, 148, 156
LpnPI CCDG 1 cut(s) 132
MalI GATC 2 cut(s) 165, 215
MboI GATC 2 cut(s) 163, 213
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 153, 250
MluCI AATT 2 cut(s) 4, 21
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 5 cut(s) 101, 138, 141, 144, 164
Mva1269I GAATGC 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 119, 250, 271
NdeII GATC 2 cut(s) 163, 213
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 87
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PctI GAATGC 1 cut(s) 246
Psp124BI GAGCTC 2 cut(s) 153, 250
PspN4I GGNNCC 1 cut(s) 87
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 2 cut(s) 37, 117
RsaNI GTAC 2 cut(s) 36, 116
SacI GAGCTC 2 cut(s) 153, 250
Sau3AI GATC 2 cut(s) 163, 213
SduI GDGCHC 2 cut(s) 153, 250
SetI ASST 7 cut(s) 115, 121, 130, 153, 162, 198, 250
SmlI CTYRAG 5 cut(s) 155, 167, 179, 191, 203
SmoI CTYRAG 5 cut(s) 155, 167, 179, 191, 203
SphI GCATGC 1 cut(s) 269
Sse9I AATT 2 cut(s) 4, 21
SsiI CCGC 1 cut(s) 83
SstI GAGCTC 2 cut(s) 153, 250
TaaI ACNGT 1 cut(s) 35
TasI AATT 2 cut(s) 4, 21
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.