Rmu_sc0007415.1_g000035

Zinc finger BED domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007415.1
Physical Location & Seq
Reverse (-)
174896 .. 175246
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007415.1_g000035.1.cds

Sequence Viewer

Length: 351 bp
atgaattctgaaaatcccacaattccaccaaacagtacccaagacactactaataaccccaacgccatttctattccgagtgcggggcctaatccaactgaacaaggaggagctgtacctgttccacctcctcctgtaccttgtgttagaaagaggaaacctgctaggaacgcctctgatgtgtggaatcatttcaaaaaggtagatgagaatggtgagaatcctagatgcatttgtaagcattgtggaacagactatgcttgtgatccaaagaggaatggcacttccactttgtggaatcatgtgaggaaccaatgcaaacgttctccactgagaattcctagcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

12.74

Weight (kDa)

9.24

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018004)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 294
AciI CCGC 1 cut(s) 83
AclI AACGTT 1 cut(s) 322
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 2 cut(s) 4, 336
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 3 cut(s) 37, 117, 138
AfiI CCNNNNNNNGG 2 cut(s) 83, 294
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 2 cut(s) 113, 345
AluI AGCT 2 cut(s) 113, 345
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 4, 336
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 227
BfaI CTAG 3 cut(s) 165, 225, 342
BfuAI ACCTGC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 87, 311
BmsI GCATC 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 294
BseLI CCNNNNNNNGG 2 cut(s) 83, 294
BseMII CTCAG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 120, 123
BshFI GGCC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 83, 294
BsnI GGCC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 87, 311
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 1 cut(s) 260
BssMI GATC 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 332
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 329
BveI ACCTGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 3 cut(s) 36, 116, 137
CviAII CATG 1 cut(s) 302
CviJI RGCY 3 cut(s) 88, 113, 345
CviKI_1 RGCY 3 cut(s) 88, 113, 345
CviQI GTAC 3 cut(s) 36, 116, 137
DdeI CTNAG 1 cut(s) 332
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
DraIII CACNNNGTG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 86
EcoRI GAATTC 2 cut(s) 4, 336
EcoT22I ATGCAT 1 cut(s) 233
FaeI CATG 1 cut(s) 305
FaiI YATR 2 cut(s) 258, 303
FatI CATG 1 cut(s) 301
FauI CCCGC 1 cut(s) 76
FspBI CTAG 3 cut(s) 165, 225, 342
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 1 cut(s) 305
HinfI GANTC 3 cut(s) 187, 220, 298
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 3 cut(s) 10, 78, 178
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 2 cut(s) 231, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 3 cut(s) 132, 147, 174
LweI GCATC 1 cut(s) 218
MaeI CTAG 3 cut(s) 165, 225, 342
MaeII ACGT 1 cut(s) 322
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MluCI AATT 3 cut(s) 4, 21, 336
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 7 cut(s) 101, 138, 141, 147, 184, 267, 300
Mph1103I ATGCAT 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 2 cut(s) 87, 311
NsiI ATGCAT 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 3 cut(s) 187, 220, 298
PflMI CCANNNNNTGG 1 cut(s) 294
Psp1406I AACGTT 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 87, 311
PspPI GGNCC 1 cut(s) 86
RsaI GTAC 3 cut(s) 37, 117, 138
RsaNI GTAC 3 cut(s) 36, 116, 137
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 86
SetI ASST 8 cut(s) 115, 121, 130, 142, 163, 204, 325, 347
SfaNI GCATC 1 cut(s) 218
Sse9I AATT 3 cut(s) 4, 21, 336
SsiI CCGC 1 cut(s) 83
SspMI CTAG 3 cut(s) 165, 225, 342
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 325
TasI AATT 3 cut(s) 4, 21, 336
TfiI GAWTC 3 cut(s) 187, 220, 298
TscAI CASTG 1 cut(s) 336
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 336
Van91I CCANNNNNTGG 1 cut(s) 294
XapI RAATTY 2 cut(s) 4, 336
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 3 cut(s) 165, 225, 342
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.