FvH4_3g23970

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
17051152 .. 17053289
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23970.t1

Sequence Viewer

Length: 1788 bp
ATGAAGAGCATGAGCGGCTTCAATCTGTTTCTCAAGGGGTTGTTATTCATAGGAGTCATTTCCTTCTGCACCGCAGTATGTAAGGGAAGCGAGTCATCGGAATTTGAATCATTGCTGAGGTTCATTAGAGCTGTTGATCCTAAAAATGTACTGAATTTTGGTCGCAATGTGCGCTATTCCTGCAAGCATAAGTTGAAGGGTGTTGAATGCAACACCGAGGCTGCTAATAGCATAACAGAAATAAGGCTTGAAAATCTGCATCTTAGTGGCATACTTGATGTGGATTCACTATGCAAGCTCCCGAATCTACGAGTTGTCAGCTTAGCAAGGAACCGCATCCGAGGAACTATCTCTAACTCAATAGTGAACTGCAGAAGACTAGCCTATTTGGATCTAAGCAACAATCTTCTGAGTGGGATGGTACCTAAGGCTCTAAATAAACTGAAGTATCAAAGGAGATTGTACATCTCTAACAATTATTTTACTAGGGACATCCCAAGTTCAAGAGAGGAATATCATCTTCATCCACATTTCAAGGAATCAAATATATCACAGAGATACGGTACCATGAACAAAGAAAGGGCAGAGCATCCAATGCGGATAATGATAGAGTCTGACAGCCCTATTTCTCCTCCTGGAGATCACCCCTGGAAGGGCATGTTACCTTTAGTTTGTGGGATAGGACTATTTCTGGTGTTCATATTCTTTGCGGGAAGGAAGGCTGCTAAGTTAGCCACTCAGATGGAGATTCTGAAGTCACTTCGAGAGTACTCTACTCCAAAATCACCTCCAGCTAAGGTTCAAGAGGAAGAGAAGCCAGTAGAGAATCGATCAGAGCTAGTGTTCTTTGTTGAAGAGCATGAAAGTTTTAAGTTGGAGGACTTGCTTGAAGCCACAGCTGACTTGAGAAACCAGAGCTTTTGCAGCAGCCTTTACAAGGTAATACTCAAAAACAATGCACTGTATGCAGTCAAAAGGCTGAAGAAGTTGCAGGTACCCTTTGAGGAGTTTGGCCAAGCAATGAATCAGATAGGGAAGATCAAACATCCCAACATTCTGCCTCTTATTGGTTACAATTCTACCAATGATGAAAAGCTTTTGATATACAAGTTTCAAAACAACGGGAGTCTGCTAAACCTGCTTGAGGATTACACAGAAGGCAAGAGGGATTTCCCATGGAGGCTGCGGCTATCTATAGCATGTGGAATTTCAAGAGGCTTAGATTTCATATACCAAAGGTCTGATGAGTGCATCCCTCATGGGAATCTAAAACTTTCAAACATCCTTCTTGATGAAAAGGATGAACCACTGATCAGTGAATACGGATTTTCAAAGTTCTTTGACCCCCTGAAAGGATGTGTCATCCTCTCCAAAGGTTATACAGCCCCAGAGAAAGATTTATCAGAGAAGGGCGATGTTTATAGCTTTGGAGTGATTCTTCTTGAGTTACTAACTGGCAAAACTGTAGAAACAAGTGAGATAGATCTTCCTAAGTGGGTTACTGCCATGGTTAAGGAGGAGTGGACTGGTGAAGTCTTTGACAAGGAGGTTGTGAAAGCCGCAAAGGAGTGGGCATTTCCTTTGCTCAACATTGCTCTCAAGTGTGTATCAGCATTGCCACAAAATCGACCAACTGTGGCAGAAATTTATAAGAAGATTGAAGAGGTTATGCTGGATAATTTGAATACATCAGATTGTACTGCTGAGTGTGGAACCTATGAAGACAACTTTTGTATGCTTCACTCCATTATACCAGAGACCTGGGATACTCCTGGATCAAATTACTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

596

Amino Acids

67.68

Weight (kDa)

7.48

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 101 - 160 8.3e-08 Leucine rich repeat
Pkinase PF00069 310 - 551 3.4e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 318 - 552 3.7e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014696)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1650
Acc36I ACCTGC 2 cut(s) 982, 1146
Acc65I GGTACC 3 cut(s) 421, 563, 994
AccB1I GGYRCC 3 cut(s) 421, 563, 994
AccBSI CCGCTC 1 cut(s) 15
AciI CCGC 7 cut(s) 15, 72, 334, 598, 710, 1186, 1560
AclWI GGATC 3 cut(s) 131, 399, 1783
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 4 cut(s) 101, 154, 1206, 1644
AcuI CTGAAG 3 cut(s) 464, 773, 1001
AfaI GTAC 7 cut(s) 150, 423, 464, 565, 770, 996, 1699
AfiI CCNNNNNNNGG 6 cut(s) 652, 653, 937, 1067, 1144, 1352
AjnI CCWGG 4 cut(s) 634, 647, 1760, 1771
AluBI AGCT 9 cut(s) 131, 298, 321, 794, 838, 899, 918, 1096, 1425
AluI AGCT 9 cut(s) 131, 298, 321, 794, 838, 899, 918, 1096, 1425
Alw26I GTCTC 1 cut(s) 1751
AlwI GGATC 3 cut(s) 131, 399, 1783
AoxI GGCC 1 cut(s) 1012
ApeKI GCWGC 5 cut(s) 221, 722, 924, 927, 1183
ApoI RAATTY 4 cut(s) 101, 154, 1206, 1644
Asp718I GGTACC 3 cut(s) 421, 563, 994
AspLEI GCGC 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 635, 777, 1541
AxyI CCTNAGG 1 cut(s) 426
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BalI TGGCCA 1 cut(s) 1014
BanI GGYRCC 3 cut(s) 421, 563, 994
BbsI GAAGAC 2 cut(s) 382, 1728
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 5 cut(s) 208, 709, 936, 939, 1170
BccI CCATC 2 cut(s) 412, 736
BciT130I CCWGG 4 cut(s) 636, 649, 1762, 1773
BciVI GTATCC 1 cut(s) 1759
BclI TGATCA 1 cut(s) 1311
BcoDI GTCTC 1 cut(s) 1751
BfaI CTAG 4 cut(s) 380, 486, 839, 1786
BfmI CTRYAG 3 cut(s) 370, 1194, 1464
BfuAI ACCTGC 2 cut(s) 982, 1146
BfuI GTATCC 1 cut(s) 1759
BglII AGATCT 1 cut(s) 1483
BisI GCNGC 8 cut(s) 16, 222, 723, 925, 928, 1184, 1187, 1560
BlpI GCTNAGC 1 cut(s) 322
BlsI GCNGC 8 cut(s) 17, 223, 724, 926, 929, 1185, 1188, 1561
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 4 cut(s) 636, 649, 1762, 1773
BmiI GGNNCC 5 cut(s) 332, 423, 565, 996, 1714
BmrFI CCNGG 4 cut(s) 636, 649, 1762, 1773
BmsI GCATC 4 cut(s) 268, 345, 598, 1260
BpiI GAAGAC 2 cut(s) 382, 1728
BpmI CTGGAG 2 cut(s) 657, 774
Bpu10I CCTNAGC 2 cut(s) 116, 795
Bpu1102I GCTNAGC 1 cut(s) 322
BpuEI CTTGAG 5 cut(s) 17, 925, 1163, 1463, 1583
Bsa29I ATCGAT 1 cut(s) 829
BsaI GGTCTC 1 cut(s) 1751
BsaJI CCNNGG 6 cut(s) 216, 340, 647, 1175, 1506, 1761
Bsc4I CCNNNNNNNGG 6 cut(s) 652, 653, 937, 1067, 1144, 1352
Bse1I ACTGG 3 cut(s) 818, 1459, 1531
Bse21I CCTNAGG 1 cut(s) 426
Bse3DI GCAATG 5 cut(s) 110, 172, 1026, 1590, 1613
BseBI CCWGG 4 cut(s) 636, 649, 1762, 1773
BseCI ATCGAT 1 cut(s) 829
BseDI CCNNGG 6 cut(s) 216, 340, 647, 1175, 1506, 1761
BseLI CCNNNNNNNGG 6 cut(s) 652, 653, 937, 1067, 1144, 1352
BseMI GCAATG 5 cut(s) 110, 172, 1026, 1590, 1613
BseMII CTCAG 4 cut(s) 107, 401, 752, 1695
BseNI ACTGG 3 cut(s) 818, 1459, 1531
BseRI GAGGAG 3 cut(s) 621, 1019, 1532
BseXI GCAGC 5 cut(s) 208, 709, 936, 939, 1170
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 1 cut(s) 1014
BshNI GGYRCC 3 cut(s) 421, 563, 994
BshVI ATCGAT 1 cut(s) 829
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 6 cut(s) 652, 653, 937, 1067, 1144, 1352
BsmAI GTCTC 1 cut(s) 1751
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 1014
Bso31I GGTCTC 1 cut(s) 1751
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 8 cut(s) 136, 391, 640, 830, 1038, 1311, 1483, 1775
Bsp1720I GCTNAGC 1 cut(s) 322
Bsp19I CCATGG 2 cut(s) 1175, 1506
BspACI CCGC 7 cut(s) 15, 72, 334, 598, 710, 1186, 1560
BspANI GGCC 1 cut(s) 1014
BspCNI CTCAG 4 cut(s) 108, 402, 751, 1696
BspDI ATCGAT 1 cut(s) 829
BspLI GGNNCC 5 cut(s) 332, 423, 565, 996, 1714
BspMAI CTGCAG 1 cut(s) 374
BspMI ACCTGC 2 cut(s) 982, 1146
BspPI GGATC 3 cut(s) 131, 399, 1783
BspQI GCTCTTC 1 cut(s) 849
BspT107I GGYRCC 3 cut(s) 421, 563, 994
BspTNI GGTCTC 1 cut(s) 1751
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 5 cut(s) 110, 172, 1026, 1590, 1613
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 3 cut(s) 818, 1459, 1531
BssECI CCNNGG 6 cut(s) 216, 340, 647, 1175, 1506, 1761
BssMI GATC 8 cut(s) 136, 391, 640, 830, 1038, 1311, 1483, 1775
BssT1I CCWWGG 2 cut(s) 1175, 1506
Bst2UI CCWGG 4 cut(s) 636, 649, 1762, 1773
Bst4CI ACNGT 4 cut(s) 563, 963, 1465, 1636
Bst6I CTCTTC 3 cut(s) 804, 849, 1656
BstAPI GCANNNNNTGC 2 cut(s) 595, 965
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 185, 296
BstDSI CCRYGG 2 cut(s) 1175, 1506
BstENI CCTNNNNNAGG 2 cut(s) 935, 1142
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 8 cut(s) 139, 394, 643, 833, 1041, 1314, 1486, 1778
BstMAI GTCTC 1 cut(s) 1751
BstMBI GATC 8 cut(s) 136, 391, 640, 830, 1038, 1311, 1483, 1775
BstMWI GCNNNNNNNGC 8 cut(s) 15, 171, 180, 595, 731, 924, 965, 1138
BstNI CCWGG 4 cut(s) 636, 649, 1762, 1773
BstNSI RCATGY 2 cut(s) 661, 1203
BstSCI CCNGG 4 cut(s) 634, 647, 1760, 1771
BstSFI CTRYAG 3 cut(s) 370, 1194, 1464
BstV1I GCAGC 5 cut(s) 208, 709, 936, 939, 1170
BstV2I GAAGAC 2 cut(s) 382, 1728
BstX2I RGATCY 2 cut(s) 391, 1483
BstXI CCANNNNNNTGG 2 cut(s) 742, 1761
BstYI RGATCY 2 cut(s) 391, 1483
Bsu15I ATCGAT 1 cut(s) 829
Bsu36I CCTNAGG 1 cut(s) 426
BsuI GTATCC 1 cut(s) 1759
BsuRI GGCC 1 cut(s) 1014
BsuTUI ATCGAT 1 cut(s) 829
BtgI CCRYGG 2 cut(s) 1175, 1506
BtgZI GCGATG 1 cut(s) 1428
BtsIMutI CAGTG 3 cut(s) 959, 1307, 1321
BveI ACCTGC 2 cut(s) 982, 1146
Cac8I GCNNGC 2 cut(s) 185, 296
CfoI GCGC 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 829
Csp6I GTAC 7 cut(s) 149, 422, 463, 564, 769, 995, 1698
CviAII CATG 8 cut(s) 10, 568, 658, 860, 1176, 1200, 1259, 1507
CviQI GTAC 7 cut(s) 149, 422, 463, 564, 769, 995, 1698
DpnI GATC 8 cut(s) 138, 393, 642, 832, 1040, 1313, 1485, 1777
DpnII GATC 8 cut(s) 136, 391, 640, 830, 1038, 1311, 1483, 1775
EaeI YGGCCR 1 cut(s) 1012
Eam1104I CTCTTC 3 cut(s) 804, 849, 1656
EarI CTCTTC 3 cut(s) 804, 849, 1656
Eco130I CCWWGG 2 cut(s) 1175, 1506
Eco31I GGTCTC 1 cut(s) 1751
Eco57I CTGAAG 3 cut(s) 464, 773, 1001
Eco81I CCTNAGG 1 cut(s) 426
EcoNI CCTNNNNNAGG 2 cut(s) 935, 1142
EcoRII CCWGG 4 cut(s) 634, 647, 1760, 1771
EcoT14I CCWWGG 2 cut(s) 1175, 1506
ErhI CCWWGG 2 cut(s) 1175, 1506
FaeI CATG 8 cut(s) 13, 571, 661, 863, 1179, 1203, 1262, 1510
FaqI GGGAC 1 cut(s) 503
FatI CATG 8 cut(s) 9, 567, 657, 859, 1175, 1199, 1258, 1506
FauI CCCGC 1 cut(s) 703
FbaI TGATCA 1 cut(s) 1311
Fnu4HI GCNGC 8 cut(s) 16, 222, 723, 925, 928, 1184, 1187, 1560
Fsp4HI GCNGC 8 cut(s) 16, 222, 723, 925, 928, 1184, 1187, 1560
FspBI CTAG 4 cut(s) 380, 486, 839, 1786
GlaI GCGC 1 cut(s) 173
GluI GCNGC 8 cut(s) 16, 222, 723, 925, 928, 1184, 1187, 1560
GsuI CTGGAG 2 cut(s) 657, 774
HaeIII GGCC 1 cut(s) 1014
HhaI GCGC 1 cut(s) 174
Hin1II CATG 8 cut(s) 13, 571, 661, 863, 1179, 1203, 1262, 1510
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 1094
HphI GGTGA 3 cut(s) 635, 777, 1541
Hpy166II GTNNAC 2 cut(s) 367, 1524
Hpy188III TCNNGA 7 cut(s) 301, 504, 764, 803, 1212, 1289, 1442
Hpy8I GTNNAC 2 cut(s) 367, 1524
HpyAV CCTTC 8 cut(s) 73, 190, 646, 708, 712, 1151, 1295, 1402
HpyCH4III ACNGT 4 cut(s) 563, 963, 1465, 1636
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 171, 180, 595, 731, 924, 965, 1138
Hsp92II CATG 8 cut(s) 13, 571, 661, 863, 1179, 1203, 1262, 1510
HspAI GCGC 1 cut(s) 172
KpnI GGTACC 3 cut(s) 425, 567, 998
Ksp22I TGATCA 1 cut(s) 1311
Kzo9I GATC 8 cut(s) 136, 391, 640, 830, 1038, 1311, 1483, 1775
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 5 cut(s) 208, 709, 936, 939, 1170
LweI GCATC 4 cut(s) 268, 345, 598, 1260
MaeI CTAG 4 cut(s) 380, 486, 839, 1786
MaeIII GTNAC 5 cut(s) 660, 756, 1070, 1446, 1498
MalI GATC 8 cut(s) 138, 393, 642, 832, 1040, 1313, 1485, 1777
MbiI CCGCTC 1 cut(s) 15
MboI GATC 8 cut(s) 136, 391, 640, 830, 1038, 1311, 1483, 1775
MflI RGATCY 2 cut(s) 391, 1483
MlsI TGGCCA 1 cut(s) 1014
MluCI AATT 8 cut(s) 101, 154, 475, 1075, 1206, 1644, 1678, 1780
MluNI TGGCCA 1 cut(s) 1014
MlyI GAGTC 4 cut(s) 63, 101, 620, 1135
MmeI TCCRAC 1 cut(s) 855
Mox20I TGGCCA 1 cut(s) 1014
MscI TGGCCA 1 cut(s) 1014
MseI TTAA 2 cut(s) 870, 1512
MslI CAYNNNNRTG 2 cut(s) 264, 740
Msp20I TGGCCA 1 cut(s) 1014
MspA1I CMGCKG 1 cut(s) 899
MspR9I CCNGG 4 cut(s) 636, 649, 1762, 1773
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 4 cut(s) 636, 649, 1762, 1773
MwoI GCNNNNNNNGC 8 cut(s) 15, 171, 180, 595, 731, 924, 965, 1138
NcoI CCATGG 2 cut(s) 1175, 1506
NdeII GATC 8 cut(s) 136, 391, 640, 830, 1038, 1311, 1483, 1775
NlaIII CATG 8 cut(s) 13, 571, 661, 863, 1179, 1203, 1262, 1510
NlaIV GGNNCC 5 cut(s) 332, 423, 565, 996, 1714
NmuCI GTSAC 1 cut(s) 756
NspI RCATGY 2 cut(s) 661, 1203
PciSI GCTCTTC 1 cut(s) 849
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 9 cut(s) 107, 284, 304, 539, 748, 826, 1024, 1264, 1435
PfoI TCCNGGA 2 cut(s) 634, 1771
PkrI GCNGC 8 cut(s) 17, 223, 724, 926, 929, 1185, 1188, 1561
PleI GAGTC 4 cut(s) 62, 100, 619, 1134
PpsI GAGTC 4 cut(s) 62, 100, 619, 1134
PsiI TTATAA 1 cut(s) 1650
Psp6I CCWGG 4 cut(s) 634, 647, 1760, 1771
PspGI CCWGG 4 cut(s) 634, 647, 1760, 1771
PspN4I GGNNCC 5 cut(s) 332, 423, 565, 996, 1714
PstI CTGCAG 1 cut(s) 374
PsuI RGATCY 2 cut(s) 391, 1483
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 7 cut(s) 150, 423, 464, 565, 770, 996, 1699
RsaNI GTAC 7 cut(s) 149, 422, 463, 564, 769, 995, 1698
RseI CAYNNNNRTG 2 cut(s) 264, 740
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 2 cut(s) 870, 1512
SatI GCNGC 8 cut(s) 16, 222, 723, 925, 928, 1184, 1187, 1560
Sau3AI GATC 8 cut(s) 136, 391, 640, 830, 1038, 1311, 1483, 1775
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 4 cut(s) 63, 101, 620, 1135
ScrFI CCNGG 4 cut(s) 636, 649, 1762, 1773
SfaNI GCATC 4 cut(s) 268, 345, 598, 1260
SfcI CTRYAG 3 cut(s) 370, 1194, 1464
SmiMI CAYNNNNRTG 2 cut(s) 264, 740
SmlI CTYRAG 5 cut(s) 32, 904, 1142, 1442, 1598
SmoI CTYRAG 5 cut(s) 32, 904, 1142, 1442, 1598
Sse9I AATT 8 cut(s) 101, 154, 475, 1075, 1206, 1644, 1678, 1780
SsiI CCGC 7 cut(s) 15, 72, 334, 598, 710, 1186, 1560
SspMI CTAG 4 cut(s) 380, 486, 839, 1786
StyD4I CCNGG 4 cut(s) 634, 647, 1760, 1771
StyI CCWWGG 2 cut(s) 1175, 1506
TaaI ACNGT 4 cut(s) 563, 963, 1465, 1636
TaqI TCGA 3 cut(s) 763, 829, 1627
TasI AATT 8 cut(s) 101, 154, 475, 1075, 1206, 1644, 1678, 1780
TatI WGTACW 4 cut(s) 148, 462, 768, 1697
TauI GCSGC 3 cut(s) 18, 1189, 1562
TfiI GAWTC 9 cut(s) 107, 284, 304, 539, 748, 826, 1024, 1264, 1435
Tru1I TTAA 2 cut(s) 870, 1512
Tru9I TTAA 2 cut(s) 870, 1512
TscAI CASTG 3 cut(s) 966, 1314, 1321
TseFI GTSAC 1 cut(s) 756
TseI GCWGC 5 cut(s) 221, 722, 924, 927, 1183
Tsp45I GTSAC 1 cut(s) 756
TspGWI ACGGA 1 cut(s) 1338
TspRI CASTG 3 cut(s) 966, 1314, 1321
XagI CCTNNNNNAGG 2 cut(s) 935, 1142
XapI RAATTY 4 cut(s) 101, 154, 1206, 1644
XceI RCATGY 2 cut(s) 661, 1203
XspI CTAG 4 cut(s) 380, 486, 839, 1786
ZrmI AGTACT 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.