Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8185866.1

Orthogroup ID

OG0014696

Physical Location & Seq

Genomic Coordinates Forward (+)

18 .. 521

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8185866.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgttaccagtagtttgtgtgataggactatttctggtgttcatattctttgcgggacggaaggctgctaatttagccactcagagggagattttgaagtcaattcaagagtactctactccgaaatcacctccagctaaggttcgacaggaagagaagccagtagagaatcggtcagagctcgtgttctttgttgaagagcatgaaagtttcaagttggaggacctgtttgaagccacagcagacttgagaaaccagagtttttgcagcagcctttacaaggtaatactcaagaacaatgcactgtatgcagtcaaaaggctgaagaagttgcaggtaccctttgaggagtttggccaagcaatgaatcagatagggaacataaagcatcccaacattctgcctcttgttggttacaattctaccaacgacgaaaagcttgtgatatataagtatcaaaacaatgggagtctgctaaacctgcttcagggtaagttgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

167

Amino Acids

19.12

Weight (kDa)

9.18

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23970
malus_domestica	MD03G1189100.v1.1 MD11G1205400.v1.1
prunus_persica	Prupe.4G232000_v2.0.a1
pyrus_communis	pycom11g17810
rosa_chinensis	RchiOBHm_Chr5g0042511
rosa_laevigata	RLG00000034134
rosa_multiflora	Rmu_co8185866.1_g000001 Rmu_sc0009319.1_g000001 Rmu_sc0041109.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038130
rosa_rugosa	Rorug05G0201200
rosa_samantha	Rh5AG287100 Rh5BG291500 Rh5CG323800 Rh5DG301300
rosa_wichuraiana	Rw5G026660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	325, 489
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	355
AcuI	CTGAAG	2 cut(s)	344, 470
AfaI	GTAC	2 cut(s)	113, 339
AfiI	CCNNNNNNNGG	4 cut(s)	84, 280, 410, 487
AgsI	TTSAA	5 cut(s)	97, 107, 197, 214, 233
AluBI	AGCT	3 cut(s)	137, 181, 439
AluI	AGCT	3 cut(s)	137, 181, 439
Alw21I	GWGCWC	1 cut(s)	183
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	65, 267, 270
Asp718I	GGTACC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	183
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	52, 279, 282
BfuAI	ACCTGC	2 cut(s)	325, 489
BisI	GCNGC	3 cut(s)	66, 268, 271
BlsI	GCNGC	3 cut(s)	67, 269, 272
BmcAI	AGTACT	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	339
BmsI	GCATC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	268, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 280, 410, 487
Bse1I	ACTGG	2 cut(s)	8, 161
Bse3DI	GCAATG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	4 cut(s)	84, 280, 410, 487
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	8, 161
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	52, 279, 282
BshFI	GGCC	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	4 cut(s)	84, 280, 410, 487
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	339
BspMI	ACCTGC	2 cut(s)	325, 489
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	8, 161
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	2 cut(s)	147, 192
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	81, 138
BstENI	CCTNNNNNAGG	2 cut(s)	278, 485
BstF5I	GGATG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 308, 481
BstV1I	GCAGC	3 cut(s)	52, 279, 282
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	302
BveI	ACCTGC	2 cut(s)	325, 489
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	112, 338
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	2 cut(s)	112, 338
DdeI	CTNAG	2 cut(s)	81, 138
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	147, 192
EarI	CTCTTC	2 cut(s)	147, 192
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	344, 470
EcoICRI	GAGCTC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 485
EcoO109I	RGGNCCY	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	1 cut(s)	206
FaiI	YATR	6 cut(s)	44, 204, 309, 383, 448, 450
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	66, 268, 271
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	3 cut(s)	66, 268, 271
GluI	GCNGC	3 cut(s)	66, 268, 271
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	169, 367, 469
HphI	GGTGA	1 cut(s)	120
Hpy188I	TCNGA	4 cut(s)	84, 123, 178, 372
Hpy188III	TCNNGA	2 cut(s)	107, 292
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	267, 302, 311, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 308, 481
HpyF3I	CTNAG	2 cut(s)	81, 138
Hsp92II	CATG	1 cut(s)	206
KpnI	GGTACC	1 cut(s)	341
LguI	GCTCTTC	1 cut(s)	192
Lsp1109I	GCAGC	3 cut(s)	52, 279, 282
LweI	GCATC	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	3, 413
MboII	GAAGA	3 cut(s)	164, 209, 337
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	3 cut(s)	70, 102, 418
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	78, 141, 214, 340, 414
Mox20I	TGGCCA	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	74, 308, 481
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	169, 367
PkrI	GCNGC	3 cut(s)	67, 269, 272
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
PpuMI	RGGWCCY	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	223
PspPPI	RGGWCCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	113, 339
RsaNI	GTAC	2 cut(s)	112, 338
SacI	GAGCTC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	192
SatI	GCNGC	3 cut(s)	66, 268, 271
Sau96I	GGNCC	1 cut(s)	223
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	1 cut(s)	478
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	9 cut(s)	133, 139, 144, 183, 228, 285, 339, 441, 483
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	2 cut(s)	247, 290
SmoI	CTYRAG	2 cut(s)	247, 290
Sse9I	AATT	3 cut(s)	70, 102, 418
SsiI	CCGC	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	145
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	3 cut(s)	70, 102, 418
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	169, 367
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	3 cut(s)	65, 267, 270
TspDTI	ATGAA	3 cut(s)	31, 219, 380
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	223
XagI	CCTNNNNNAGG	2 cut(s)	278, 485
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.