Rorug05G0201200

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014696
Physical Location & Seq
Reverse (-)
19970730 .. 19971952
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0201200.1

Sequence Viewer

Length: 573 bp
ATGTCTGTCCCATATAATGTGTGCTGCTCACCTCCTTGGTCCCATTCCCCAACCAACTGCTGTCGAGCAAAAGGAATTGCAGATTTAACATCGTCGAGGATGGTGTCCGTTGAGGATAAGGCATCTGACGGATTCAACGGCGCTGGAGAATTGGGCGAGGATGATAAATGTCCTCTTCGGAGATGGTGTCCTGCATGCGGTCAGATCCGGCGAGTTGTAAGGGGACCTAAGGGGTTCCCTTATTGCATGGGTTATATATGGGTTGACGAGATGGCGGGGGAAGGCTCTGAGTGTGATGAAGAGGCCTTATTGGTTCTGCTATGGGTACCCGGTAAGTATATGGAGAGTTACTTGTTCGTGCCTCTACATCAGTTGGGATTATTTTGGTTCAACCTGTTTGCTACACTGCAAGCTCCTACAATCCACAAGCCGTCTTTCATATGGGTGGATGAATGCAAGATACATTTTGCGGGATTCGACGGCTACAGTGACTTTGAAGAACCAGAACATACACCTTCAGCCGGTGGGCTGTCAGACAGTGATCCTTCGTCGTTTGAGTTGTATTCCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

190

Amino Acids

21.12

Weight (kDa)

4.7

Isoelectric Point (pI)

59.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014696)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23970
malus_domestica MD03G1189100.v1.1 MD11G1205400.v1.1
prunus_persica Prupe.4G232000_v2.0.a1
pyrus_communis pycom11g17810
rosa_chinensis RchiOBHm_Chr5g0042511
rosa_laevigata RLG00000034134
rosa_multiflora Rmu_co8185866.1_g000001 Rmu_sc0009319.1_g000001 Rmu_sc0041109.1_g000002
rosa_roxburghii Rroxscaffold_1G00038130
rosa_rugosa Rorug05G0201200
rosa_samantha Rh5AG287100 Rh5BG291500 Rh5CG323800 Rh5DG301300
rosa_wichuraiana Rw5G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 325
AciI CCGC 3 cut(s) 198, 275, 470
AclWI GGATC 2 cut(s) 199, 536
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 197, 521
AgsI TTSAA 3 cut(s) 136, 391, 497
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
AlwI GGATC 2 cut(s) 199, 536
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 24
Asp718I GGTACC 1 cut(s) 325
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 39, 224
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 21
AvaII GGWCC 2 cut(s) 39, 224
AxyI CCTNAGG 1 cut(s) 228
BanI GGYRCC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 11
BccI CCATC 3 cut(s) 94, 177, 265
BceAI ACGGC 3 cut(s) 154, 415, 496
BcnI CCSGG 1 cut(s) 330
BfaI CTAG 1 cut(s) 571
BfmI CTRYAG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 2 cut(s) 39, 224
BmgT120I GGNCC 2 cut(s) 39, 224
BmiI GGNNCC 4 cut(s) 41, 225, 236, 327
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 521
Bse118I RCCGGY 1 cut(s) 521
Bse21I CCTNAGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 3 cut(s) 105, 166, 454
BseLI CCNNNNNNNGG 2 cut(s) 197, 521
BseMII CTCAG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 11
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 325
BsiSI CCGG 3 cut(s) 208, 330, 522
BslFI GGGAC 2 cut(s) 25, 237
BslI CCNNNNNNNGG 2 cut(s) 197, 521
BsmFI GGGAC 2 cut(s) 25, 237
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 204, 541
BspACI CCGC 3 cut(s) 198, 275, 470
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 4 cut(s) 41, 225, 236, 327
BspPI GGATC 2 cut(s) 199, 536
BspT107I GGYRCC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 521
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 204, 541
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 488, 539
Bst6I CTCTTC 2 cut(s) 180, 294
BstC8I GCNNGC 2 cut(s) 196, 411
BstDEI CTNAG 2 cut(s) 228, 288
BstF5I GGATG 3 cut(s) 105, 166, 454
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 207, 544
BstMBI GATC 2 cut(s) 204, 541
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 305
BtsCI GGATG 3 cut(s) 105, 166, 454
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 3 cut(s) 404, 493, 544
Cac8I GCNNGC 2 cut(s) 196, 411
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 39, 224
Csp6I GTAC 1 cut(s) 326
CviAII CATG 2 cut(s) 195, 247
CviJI RGCY 7 cut(s) 285, 305, 413, 430, 483, 521, 529
CviKI_1 RGCY 7 cut(s) 285, 305, 413, 430, 483, 521, 529
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 2 cut(s) 228, 288
DpnI GATC 2 cut(s) 206, 543
DpnII GATC 2 cut(s) 204, 541
Eam1104I CTCTTC 2 cut(s) 180, 294
EarI CTCTTC 2 cut(s) 180, 294
Eco130I CCWWGG 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 305
Eco47I GGWCC 2 cut(s) 39, 224
Eco57I CTGAAG 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 198, 250
FaqI GGGAC 2 cut(s) 25, 237
FatI CATG 2 cut(s) 194, 246
FauI CCCGC 2 cut(s) 268, 463
FauNDI CATATG 1 cut(s) 440
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 3 cut(s) 112, 173, 461
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 1 cut(s) 571
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 305
HapII CCGG 3 cut(s) 208, 330, 522
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 198, 250
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 2 cut(s) 132, 474
HpaII CCGG 3 cut(s) 208, 330, 522
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 5 cut(s) 127, 180, 204, 289, 535
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 3 cut(s) 97, 482, 553
HpyAV CCTTC 3 cut(s) 275, 525, 555
HpyCH4III ACNGT 2 cut(s) 488, 539
HpyCH4V TGCA 5 cut(s) 80, 194, 246, 409, 456
HpyF3I CTNAG 2 cut(s) 228, 288
Hsp92II CATG 2 cut(s) 198, 250
HspAI GCGC 1 cut(s) 141
KpnI GGTACC 1 cut(s) 329
Kzo9I GATC 2 cut(s) 204, 541
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 7 cut(s) 129, 204, 221, 343, 407, 516, 535
Lsp1109I GCAGC 1 cut(s) 11
LweI GCATC 1 cut(s) 131
MaeI CTAG 1 cut(s) 571
MaeIII GTNAC 2 cut(s) 347, 488
MalI GATC 2 cut(s) 206, 543
MboI GATC 2 cut(s) 204, 541
MboII GAAGA 3 cut(s) 167, 311, 509
MflI RGATCY 1 cut(s) 204
MluCI AATT 2 cut(s) 75, 149
MnlI CCTC 7 cut(s) 42, 90, 106, 151, 183, 295, 372
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 3 cut(s) 208, 330, 522
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 458
NciI CCSGG 1 cut(s) 330
NdeI CATATG 1 cut(s) 440
NdeII GATC 2 cut(s) 204, 541
NlaIII CATG 2 cut(s) 198, 250
NlaIV GGNNCC 4 cut(s) 41, 225, 236, 327
NmuCI GTSAC 1 cut(s) 488
NspI RCATGY 1 cut(s) 198
PaeI GCATGC 1 cut(s) 198
PceI AGGCCT 1 cut(s) 305
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 2 cut(s) 132, 474
PkrI GCNGC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 4 cut(s) 41, 225, 236, 327
PspPI GGNCC 2 cut(s) 39, 224
PspPPI RGGWCCY 1 cut(s) 224
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 2 cut(s) 204, 541
Sau96I GGNCC 2 cut(s) 39, 224
ScrFI CCNGG 1 cut(s) 330
SetI ASST 5 cut(s) 34, 229, 396, 415, 517
SfaNI GCATC 1 cut(s) 131
SfcI CTRYAG 1 cut(s) 484
SinI GGWCC 2 cut(s) 39, 224
SmiMI CAYNNNNRTG 1 cut(s) 443
SphI GCATGC 1 cut(s) 198
Sse9I AATT 2 cut(s) 75, 149
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 3 cut(s) 198, 275, 470
SspMI CTAG 1 cut(s) 571
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 488, 539
TaqI TCGA 3 cut(s) 64, 95, 477
TasI AATT 2 cut(s) 75, 149
TfiI GAWTC 2 cut(s) 132, 474
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 3 cut(s) 411, 493, 544
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 312, 427, 465
TspGWI ACGGA 2 cut(s) 97, 144
TspRI CASTG 3 cut(s) 411, 493, 544
VpaK11BI GGWCC 2 cut(s) 39, 224
XceI RCATGY 1 cut(s) 198
XspI CTAG 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.