Rmu_sc0009319.1_g000001

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009319.1
OG0014696
Physical Location & Seq
Reverse (-)
330 .. 1505
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009319.1_g000001.1.cds

Sequence Viewer

Length: 1176 bp
atgaagagcaggagccgtttcaatctgtttctcaagggcctgatattcattggagtcctttccttctgcactgaggtatgtaagggaggtgagtcatcggaatttgaatcattgctgaggttcattagagctgttgatcctaaacatatattgaatgttagccacaatatgccatattcctgcaagcataagttgaaaggtgtggaatgcaaccccgagggtaatagcataacagaaataaggcttcaaaatctgcatcttagtggcacacttgatgtagattcactatgcaagctcccaaatctacgagttgttagcttagcaagaaaccgcatccgaggaactatttctaagtccatagtgcactgcacaagactagcctatttggatctaagcaacaatcttctgagtgggagtgtgcctaaggctctgaataaactgaagtatcaaaggagattgtacatctccaacaattattttactagggacatcccaagttcgagagaggaatatcagcttcatccacatttcaaggaatcaaagacatcacagcgatatgatgccatggacaaagaagaggcagggcatccaatgaggataatgacagagtctgagagccctagttctcctcctaaacctgatggtaaaaagtggcacaagatatggtggagcatgttaccagtagtttgtgtgataggactatttctggtgttcatattctttgcgggacggaaggctgctaatttagccactcagagggagattttgaagtcaattcaagagtactctactccgaaatcacctccagctaaggttcgacaggaagagaagccagtagagaatcggtcagagctcgtgttctttgttgaagagcatgaaagtttcaagttggaggacctgtttgaagccacagcagacttgagaaaccagagtttttgcagcagcctttacaaggtaatactcaagaacaatgcactgtatgcagtcaaaaggctgaagaagttgcaggtaccctttgaggagtttggccaagcaatgaatcagatagggaacataaagcatcccaacattctgcctcttgttggttacaattctaccaacgacgaaaagcttgtgatatataagtatcaaaacaatgggagtctgctaaacctgcttcagggtaagttgagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

391

Amino Acids

44.84

Weight (kDa)

9.48

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014696)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23970
malus_domestica MD03G1189100.v1.1 MD11G1205400.v1.1
prunus_persica Prupe.4G232000_v2.0.a1
pyrus_communis pycom11g17810
rosa_chinensis RchiOBHm_Chr5g0042511
rosa_laevigata RLG00000034134
rosa_multiflora Rmu_co8185866.1_g000001 Rmu_sc0009319.1_g000001 Rmu_sc0041109.1_g000002
rosa_roxburghii Rroxscaffold_1G00038130
rosa_rugosa Rorug05G0201200
rosa_samantha Rh5AG287100 Rh5BG291500 Rh5CG323800 Rh5DG301300
rosa_wichuraiana Rw5G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 997, 1161
Acc65I GGTACC 1 cut(s) 1009
AccB1I GGYRCC 1 cut(s) 1009
AciI CCGC 2 cut(s) 331, 725
AclWI GGATC 2 cut(s) 131, 396
AcoI YGGCCR 1 cut(s) 1027
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 3 cut(s) 461, 1016, 1142
AfaI GTAC 3 cut(s) 461, 785, 1011
AfiI CCNNNNNNNGG 4 cut(s) 756, 952, 1082, 1159
AluBI AGCT 7 cut(s) 131, 295, 318, 517, 809, 853, 1111
AluI AGCT 7 cut(s) 131, 295, 318, 517, 809, 853, 1111
Alw21I GWGCWC 2 cut(s) 366, 855
Alw44I GTGCAC 1 cut(s) 362
AlwI GGATC 2 cut(s) 131, 396
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 37, 1027
ApaLI GTGCAC 1 cut(s) 362
ApeKI GCWGC 3 cut(s) 737, 939, 942
ApoI RAATTY 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 346
Asp718I GGTACC 1 cut(s) 1009
AspS9I GGNCC 2 cut(s) 37, 895
AsuHPI GGTGA 2 cut(s) 101, 792
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 895
AxyI CCTNAGG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 366
BaeI ACNNNNGTAYC 2 cut(s) 428, 461
BalI TGGCCA 1 cut(s) 1029
BanI GGYRCC 1 cut(s) 1009
BanII GRGCYC 2 cut(s) 620, 855
BauI CACGAG 1 cut(s) 854
Bbv12I GWGCWC 2 cut(s) 366, 855
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 724, 951, 954
BccI CCATC 1 cut(s) 635
BfaI CTAG 3 cut(s) 377, 483, 621
BfuAI ACCTGC 2 cut(s) 997, 1161
BisI GCNGC 3 cut(s) 738, 940, 943
BlpI GCTNAGC 1 cut(s) 319
BlsI GCNGC 3 cut(s) 739, 941, 944
BmcAI AGTACT 1 cut(s) 785
Bme18I GGWCC 1 cut(s) 895
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 37, 895
BmiI GGNNCC 2 cut(s) 14, 1011
BmsI GCATC 5 cut(s) 265, 342, 550, 595, 1069
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 2 cut(s) 116, 810
Bpu1102I GCTNAGC 1 cut(s) 319
BpuEI CTTGAG 3 cut(s) 17, 940, 947
BsaJI CCNNGG 3 cut(s) 216, 337, 564
BsaXI ACNNNNNCTCC 2 cut(s) 884, 914
Bsc4I CCNNNNNNNGG 4 cut(s) 756, 952, 1082, 1159
Bse1I ACTGG 2 cut(s) 680, 833
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 2 cut(s) 110, 1041
BseDI CCNNGG 3 cut(s) 216, 337, 564
BseGI GGATG 5 cut(s) 333, 489, 520, 586, 1060
BseLI CCNNNNNNNGG 4 cut(s) 756, 952, 1082, 1159
BseMI GCAATG 2 cut(s) 110, 1041
BseMII CTCAG 5 cut(s) 63, 107, 398, 603, 767
BseNI ACTGG 2 cut(s) 680, 833
BseRI GAGGAG 2 cut(s) 618, 1034
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 3 cut(s) 724, 951, 954
BsgI GTGCAG 2 cut(s) 52, 352
BshFI GGCC 2 cut(s) 39, 1029
BshNI GGYRCC 1 cut(s) 1009
BsiHKAI GWGCWC 2 cut(s) 366, 855
BsiHKCI CYCGRG 1 cut(s) 215
BslFI GGGAC 2 cut(s) 500, 741
BslI CCNNNNNNNGG 4 cut(s) 756, 952, 1082, 1159
BsmFI GGGAC 2 cut(s) 500, 741
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 2 cut(s) 39, 1029
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 366, 620, 855
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 2 cut(s) 136, 388
Bsp1720I GCTNAGC 1 cut(s) 319
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 2 cut(s) 331, 725
BspANI GGCC 2 cut(s) 39, 1029
BspCNI CTCAG 5 cut(s) 64, 108, 399, 604, 766
BspLI GGNNCC 2 cut(s) 14, 1011
BspMI ACCTGC 2 cut(s) 997, 1161
BspPI GGATC 2 cut(s) 131, 396
BspQI GCTCTTC 1 cut(s) 864
BspT107I GGYRCC 1 cut(s) 1009
BsrDI GCAATG 2 cut(s) 110, 1041
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 2 cut(s) 680, 833
BssECI CCNNGG 3 cut(s) 216, 337, 564
BssMI GATC 2 cut(s) 136, 388
BssSI CACGAG 1 cut(s) 854
BssT1I CCWWGG 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 854
Bst4CI ACNGT 1 cut(s) 978
Bst6I CTCTTC 3 cut(s) 570, 819, 864
BstAPI GCANNNNNTGC 1 cut(s) 980
BstAUI TGTACA 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 185, 293
BstDSI CCRYGG 1 cut(s) 564
BstENI CCTNNNNNAGG 2 cut(s) 950, 1157
BstF5I GGATG 5 cut(s) 333, 489, 520, 586, 1060
BstKTI GATC 2 cut(s) 139, 391
BstMBI GATC 2 cut(s) 136, 388
BstMWI GCNNNNNNNGC 3 cut(s) 746, 980, 1153
BstNSI RCATGY 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 724, 951, 954
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 2 cut(s) 39, 1029
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 5 cut(s) 333, 489, 520, 586, 1060
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 3 cut(s) 69, 364, 974
BveI ACCTGC 2 cut(s) 997, 1161
Cac8I GCNNGC 2 cut(s) 185, 293
CaiI CAGNNNCTG 1 cut(s) 611
Cfr13I GGNCC 2 cut(s) 37, 895
Csp6I GTAC 3 cut(s) 460, 784, 1010
CviAII CATG 3 cut(s) 565, 673, 875
CviQI GTAC 3 cut(s) 460, 784, 1010
DpnI GATC 2 cut(s) 138, 390
DpnII GATC 2 cut(s) 136, 388
EaeI YGGCCR 1 cut(s) 1027
Eam1104I CTCTTC 3 cut(s) 570, 819, 864
EarI CTCTTC 3 cut(s) 570, 819, 864
Ecl136II GAGCTC 1 cut(s) 853
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 2 cut(s) 620, 855
Eco47I GGWCC 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 3 cut(s) 461, 1016, 1142
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 853
EcoNI CCTNNNNNAGG 2 cut(s) 950, 1157
EcoO109I RGGNCCY 2 cut(s) 37, 895
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 2 cut(s) 620, 855
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 3 cut(s) 568, 676, 878
FaqI GGGAC 2 cut(s) 500, 741
FatI CATG 3 cut(s) 564, 672, 874
FauI CCCGC 1 cut(s) 718
Fnu4HI GCNGC 3 cut(s) 738, 940, 943
FokI GGATG 5 cut(s) 320, 476, 507, 573, 1047
FriOI GRGCYC 2 cut(s) 620, 855
Fsp4HI GCNGC 3 cut(s) 738, 940, 943
FspBI CTAG 3 cut(s) 377, 483, 621
GluI GCNGC 3 cut(s) 738, 940, 943
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 2 cut(s) 39, 1029
Hin1II CATG 3 cut(s) 568, 676, 878
HindIII AAGCTT 1 cut(s) 1109
HinfI GANTC 9 cut(s) 54, 92, 107, 281, 536, 608, 841, 1039, 1141
HphI GGTGA 2 cut(s) 101, 792
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 9 cut(s) 100, 338, 408, 432, 613, 756, 795, 850, 1044
Hpy188III TCNNGA 3 cut(s) 501, 779, 964
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 1106
HpyAV CCTTC 2 cut(s) 73, 727
HpyCH4III ACNGT 1 cut(s) 978
HpyF10VI GCNNNNNNNGC 3 cut(s) 746, 980, 1153
Hsp92II CATG 3 cut(s) 568, 676, 878
KpnI GGTACC 1 cut(s) 1013
Kzo9I GATC 2 cut(s) 136, 388
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 3 cut(s) 12, 300, 669
Lsp1109I GCAGC 3 cut(s) 724, 951, 954
LweI GCATC 5 cut(s) 265, 342, 550, 595, 1069
MaeI CTAG 3 cut(s) 377, 483, 621
MaeIII GTNAC 2 cut(s) 675, 1085
MalI GATC 2 cut(s) 138, 390
MboI GATC 2 cut(s) 136, 388
MboII GAAGA 6 cut(s) 16, 395, 587, 836, 881, 1009
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 3 cut(s) 366, 620, 855
MlsI TGGCCA 1 cut(s) 1029
MluCI AATT 5 cut(s) 101, 472, 742, 774, 1090
MluNI TGGCCA 1 cut(s) 1029
MlyI GAGTC 4 cut(s) 63, 101, 617, 1150
MmeI TCCRAC 2 cut(s) 492, 870
Mox20I TGGCCA 1 cut(s) 1029
MroXI GAANNNNTTC 1 cut(s) 346
MscI TGGCCA 1 cut(s) 1029
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 1029
Mva1269I GAATGC 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 746, 980, 1153
NcoI CCATGG 1 cut(s) 564
NdeII GATC 2 cut(s) 136, 388
NlaIII CATG 3 cut(s) 568, 676, 878
NlaIV GGNNCC 2 cut(s) 14, 1011
NspI RCATGY 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 864
PctI GAATGC 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 346
PfeI GAWTC 5 cut(s) 107, 281, 536, 841, 1039
PflFI GACNNNGTC 1 cut(s) 607
PkrI GCNGC 3 cut(s) 739, 941, 944
PleI GAGTC 4 cut(s) 62, 100, 616, 1149
PpsI GAGTC 4 cut(s) 62, 100, 616, 1149
PpuMI RGGWCCY 1 cut(s) 895
Psp124BI GAGCTC 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 895
PspN4I GGNNCC 2 cut(s) 14, 1011
PspPI GGNCC 2 cut(s) 37, 895
PspPPI RGGWCCY 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 607
RsaI GTAC 3 cut(s) 461, 785, 1011
RsaNI GTAC 3 cut(s) 460, 784, 1010
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 855
SapI GCTCTTC 1 cut(s) 864
SatI GCNGC 3 cut(s) 738, 940, 943
Sau3AI GATC 2 cut(s) 136, 388
Sau96I GGNCC 2 cut(s) 37, 895
ScaI AGTACT 1 cut(s) 785
SchI GAGTC 4 cut(s) 63, 101, 617, 1150
SduI GDGCHC 3 cut(s) 366, 620, 855
SfaNI GCATC 5 cut(s) 265, 342, 550, 595, 1069
SinI GGWCC 1 cut(s) 895
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 32, 919, 962
SmoI CTYRAG 3 cut(s) 32, 919, 962
Sse9I AATT 5 cut(s) 101, 472, 742, 774, 1090
SsiI CCGC 2 cut(s) 331, 725
SspMI CTAG 3 cut(s) 377, 483, 621
SstI GAGCTC 1 cut(s) 855
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 978
TaqI TCGA 2 cut(s) 500, 817
TaqII GACCGA 1 cut(s) 834
TasI AATT 5 cut(s) 101, 472, 742, 774, 1090
TatI WGTACW 2 cut(s) 459, 783
TfiI GAWTC 5 cut(s) 107, 281, 536, 841, 1039
TscAI CASTG 3 cut(s) 76, 371, 981
TseI GCWGC 3 cut(s) 737, 939, 942
TspDTI ATGAA 7 cut(s) 17, 37, 112, 509, 703, 891, 1052
TspGWI ACGGA 1 cut(s) 745
TspRI CASTG 3 cut(s) 76, 371, 981
Tth111I GACNNNGTC 1 cut(s) 607
VneI GTGCAC 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 895
XagI CCTNNNNNAGG 2 cut(s) 950, 1157
XapI RAATTY 1 cut(s) 101
XceI RCATGY 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 346
XspI CTAG 3 cut(s) 377, 483, 621
ZrmI AGTACT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.