Rmu_sc0041109.1_g000002

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041109.1
OG0014696
Physical Location & Seq
Reverse (-)
1934 .. 2533
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041109.1_g000002.1.cds

Sequence Viewer

Length: 600 bp
ctgtccatagcacacggaattgcaaggggcttagatttcatataccagaggtctgatgagtgcatccctcatgggaacctaaagctttcgaacatccttcttgatgagaaggatgaaccactgatcagtgagtatggaatttcaaagttctttgaccccctgaaaggatttgtcatcgtctccaatggttatacagccccggagaaagatttatctgagaaaggcgatgtttatagttttggagtgattcttcttgagttactgactggcaaaactgtagaaacaagtgggatggaccttcctaagtgggttactgccatggttaaggaggagtggactggtgaagtctttgacaaggaggttgctaaagctgcaaaagagtgggcatttcctttgctcaacattgctctcaagtgtgtatcagcattgccacaaaatcggccttgtgtagcagaaatttataagaagattgaagaggttatgcaggataatttgaatacatcagattgtactgttgagtgtggaaccgatgaagacaacttttgtatgcttcactccatcatacctgagacctgggatactcctggatcaaattattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

199

Amino Acids

22.22

Weight (kDa)

4.54

Isoelectric Point (pI)

25.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014696)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23970
malus_domestica MD03G1189100.v1.1 MD11G1205400.v1.1
prunus_persica Prupe.4G232000_v2.0.a1
pyrus_communis pycom11g17810
rosa_chinensis RchiOBHm_Chr5g0042511
rosa_laevigata RLG00000034134
rosa_multiflora Rmu_co8185866.1_g000001 Rmu_sc0009319.1_g000001 Rmu_sc0041109.1_g000002
rosa_roxburghii Rroxscaffold_1G00038130
rosa_rugosa Rorug05G0201200
rosa_samantha Rh5AG287100 Rh5BG291500 Rh5CG323800 Rh5DG301300
rosa_wichuraiana Rw5G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 2 cut(s) 138, 456
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 3 cut(s) 144, 473, 496
AjnI CCWGG 2 cut(s) 572, 583
AluBI AGCT 2 cut(s) 85, 371
AluI AGCT 2 cut(s) 85, 371
Alw26I GTCTC 2 cut(s) 184, 563
AlwI GGATC 1 cut(s) 595
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 138, 456
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 358
BccI CCATC 2 cut(s) 286, 566
BciT130I CCWGG 2 cut(s) 574, 585
BciVI GTATCC 1 cut(s) 571
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 184, 563
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 571
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 3 cut(s) 200, 574, 585
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 77, 526
BmrFI CCNGG 3 cut(s) 200, 574, 585
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 275, 395
BpuMI CCSGG 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 198, 318, 573
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 271, 343
Bse3DI GCAATG 2 cut(s) 402, 425
BseBI CCWGG 2 cut(s) 574, 585
BseDI CCNNGG 3 cut(s) 198, 318, 573
BseGI GGATG 4 cut(s) 63, 93, 118, 297
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 2 cut(s) 402, 425
BseMII CTCAG 2 cut(s) 207, 558
BseNI ACTGG 2 cut(s) 271, 343
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 184, 563
BsmBI CGTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 563
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 2 cut(s) 123, 587
Bsp19I CCATGG 1 cut(s) 318
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 2 cut(s) 208, 559
BspLI GGNNCC 2 cut(s) 77, 526
BspPI GGATC 1 cut(s) 595
BspT104I TTCGAA 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 563
BsrDI GCAATG 2 cut(s) 402, 425
BsrI ACTGG 2 cut(s) 271, 343
BssECI CCNNGG 3 cut(s) 198, 318, 573
BssMI GATC 2 cut(s) 123, 587
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 574, 585
Bst4CI ACNGT 2 cut(s) 277, 514
Bst6I CTCTTC 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 89
BstDEI CTNAG 4 cut(s) 31, 216, 303, 567
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 4 cut(s) 63, 93, 118, 297
BstKTI GATC 2 cut(s) 126, 590
BstMAI GTCTC 2 cut(s) 184, 563
BstMBI GATC 2 cut(s) 123, 587
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 2 cut(s) 574, 585
BstSCI CCNGG 3 cut(s) 198, 572, 583
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 540
BsuI GTATCC 1 cut(s) 571
BsuRI GGCC 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 4 cut(s) 63, 93, 118, 297
BtsIMutI CAGTG 2 cut(s) 119, 133
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 510
CviAII CATG 2 cut(s) 71, 319
CviJI RGCY 5 cut(s) 30, 85, 197, 371, 442
CviKI_1 RGCY 5 cut(s) 30, 85, 197, 371, 442
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 4 cut(s) 31, 216, 303, 567
DpnI GATC 2 cut(s) 125, 589
DpnII GATC 2 cut(s) 123, 587
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 572, 583
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 2 cut(s) 74, 322
FatI CATG 2 cut(s) 70, 318
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 4 cut(s) 50, 80, 125, 304
Fsp4HI GCNGC 1 cut(s) 372
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 200
Hin1II CATG 2 cut(s) 74, 322
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 3 cut(s) 55, 217, 505
Hpy188III TCNNGA 2 cut(s) 101, 254
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 103, 107, 308
HpyCH4III ACNGT 2 cut(s) 277, 514
HpyCH4V TGCA 4 cut(s) 23, 63, 374, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 4 cut(s) 31, 216, 303, 567
Hsp92II CATG 2 cut(s) 74, 322
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 2 cut(s) 123, 587
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 258, 310
MalI GATC 2 cut(s) 125, 589
MboI GATC 2 cut(s) 123, 587
MboII GAAGA 4 cut(s) 242, 478, 485, 545
MluCI AATT 5 cut(s) 18, 138, 456, 490, 592
MnlI CCTC 5 cut(s) 42, 78, 322, 352, 469
MseI TTAA 1 cut(s) 324
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 3 cut(s) 200, 574, 585
MvaI CCWGG 2 cut(s) 574, 585
MwoI GCNNNNNNNGC 1 cut(s) 371
NciI CCSGG 1 cut(s) 200
NcoI CCATGG 1 cut(s) 318
NdeII GATC 2 cut(s) 123, 587
NlaIII CATG 2 cut(s) 74, 322
NlaIV GGNNCC 2 cut(s) 77, 526
NspV TTCGAA 1 cut(s) 89
PfeI GAWTC 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 1 cut(s) 373
PsiI TTATAA 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 572, 583
PspGI CCWGG 2 cut(s) 572, 583
PspN4I GGNNCC 2 cut(s) 77, 526
PspPI GGNCC 1 cut(s) 295
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 2 cut(s) 123, 587
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 3 cut(s) 200, 574, 585
SetI ASST 9 cut(s) 53, 81, 87, 300, 363, 373, 480, 568, 575
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 2 cut(s) 254, 410
SmoI CTYRAG 2 cut(s) 254, 410
Sse9I AATT 5 cut(s) 18, 138, 456, 490, 592
StyD4I CCNGG 3 cut(s) 198, 572, 583
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 277, 514
TaqI TCGA 1 cut(s) 89
TasI AATT 5 cut(s) 18, 138, 456, 490, 592
TatI WGTACW 1 cut(s) 509
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 126, 133
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 28, 129, 546
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 126, 133
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 2 cut(s) 138, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.