Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016794

Physical Location & Seq

Genomic Coordinates Forward (+)

19392497 .. 19394172

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGCAATCACCTCGCTTTCTTCTGTCCAAGAGGCCTAACATGGAGGCCGAATTTGATATTCCGTCCCACTTTCTCTGCCCCATTTCTCTTGAAGTCATGAGAGATCCCGTCACAGTCTCTACGGGGATTACCTACGATCGGGAAAGCATCCAGAAATGGTTATTTTCCGGCAAGAACAAGGCTTGCCCCGTAACGAAGCAGCCATTATTGTTGGACGCAGATCTCACTCCCAACCACACTCTTCGCCGTATAATCCAAGCTTGGTGCACCCTCAACGCCTCTCATGGGGTCGAGCGGATACCAACACCGACATCGCAGCTTGACAAGACCCAGATCGTTAAGCTTATTAACCAAGCGAGGAAGCTCCCCCACACGCAGCTCGAATGCCTCAAAAGGCTCAGATCCATGGCCGCAATCCACGGTGAAAAACACAGGAACTCTTTGGAGGCAGCAGGAGCCGTAGAATACGTTGCTTCTTTGATAAGCAACACCGACCAATCGACAATGGAAGTGGCAGTTGAAGTCTTGTTCTATCTCAGAAGCTTGGAATCTCGTCTCAAACAACTAATGAGCAAAGATGGGGAGAAGATCATAGATTCATTGGTACAAGTATTAAAACGAGGTGATTACCAATCTCGAGCTCATGCAACTATTTTATTGAGGTCTGTTTTCGAATTGGCAGATCCAAACCGGATGATGAGCCCCACAGTTGAGTTATTTATCGAGACGATGAATGTGGTACGAGATCAGGTCTCCCACCAAGCATCTAAAGCTGCTTTGAAGCTTCTTGTGGAGCTTTGTCCATGGGGAAGGAACCGAATCAAGGCCGTGGAAGGGGGCGCAGTTTCTGTCCTCATAGAGGCTCTTCTCGAAGCTCAAGAGAAGAGGGCATGTGAGCTGATACTGATCTCATTGGACCAGCTCTGTGGATGCACAGAAGGGCGAGCTGAGTTATTGAGGCACGCGGCGGGGCTGGCCATCGTGTCCAAGAAGATATTTAGGATTTCGCACATGGCAACCGACAGGGCGGTGAGGATATTGTTTTCCATTTCTAGGTTCTCTGCAACTTCTGCAGTAGTTATGGAAATGTTGCATGTTGGTGCGGTGGCCAAGTTGTGTTTAGTGCTTCAAGTCGATTGCAAGTTTAAGACCAAAGAGAAAGCTAGGGAGATTCTAAAATTGCACTCTAGGGTTTGGAAGAATTCTTCATGTGTTCCTGCTCATTTGTTGTCCTTCTATCTGCATCGTCATGACGATCAAATCATAGCTATTGTTTCTGTATATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

430

Amino Acids

48.23

Weight (kDa)

9.25

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	20 - 90	9.2e-19	U-box domain
ARM_PUB	PF25598	111 - 410	3.5e-76	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	111 - 305	7.1e-07	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016794)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26340
malus_domestica	MD03G1156000.v1.1 MD11G1173600.v1.1
prunus_persica	Prupe.6G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0048581
rosa_laevigata	RLG00000034537
rosa_multiflora	Rmu_sc0007341.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033250
rosa_rugosa	Rorug05G0239700
rosa_samantha	Rh5AG319300 Rh5BG329700 Rh5DG340900
rosa_wichuraiana	Rw0G021250 Rw5G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	1 cut(s)	965
AciI	CCGC	6 cut(s)	295, 411, 965, 968, 1028, 1103
AclWI	GGATC	3 cut(s)	98, 396, 677
AcoI	YGGCCR	3 cut(s)	408, 975, 1107
AcsI	RAATTY	2 cut(s)	50, 1201
AfaI	GTAC	2 cut(s)	606, 741
AfiI	CCNNNNNNNGG	6 cut(s)	138, 285, 823, 834, 859, 1053
AgsI	TTSAA	4 cut(s)	92, 521, 781, 1130
Alw21I	GWGCWC	2 cut(s)	269, 643
Alw26I	GTCTC	4 cut(s)	121, 560, 719, 757
Alw44I	GTGCAC	1 cut(s)	265
AlwI	GGATC	3 cut(s)	98, 396, 677
AlwNI	CAGNNNCTG	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	636
AoxI	GGCC	6 cut(s)	32, 45, 408, 825, 975, 1107
ApaLI	GTGCAC	1 cut(s)	265
ApeKI	GCWGC	5 cut(s)	199, 316, 376, 449, 773
ApoI	RAATTY	2 cut(s)	50, 1201
AspLEI	GCGC	1 cut(s)	842
AspS9I	GGNCC	1 cut(s)	916
AsuHPI	GGTGA	3 cut(s)	434, 635, 1042
AsuII	TTCGAA	1 cut(s)	672
AvaI	CYCGRG	1 cut(s)	636
AvaII	GGWCC	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	269
BalI	TGGCCA	2 cut(s)	977, 1109
BanII	GRGCYC	2 cut(s)	643, 704
Bbv12I	GWGCWC	2 cut(s)	269, 643
BbvI	GCAGC	5 cut(s)	211, 328, 388, 461, 760
BccI	CCATC	2 cut(s)	572, 986
BceAI	ACGGC	3 cut(s)	231, 443, 812
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	291
BcoDI	GTCTC	4 cut(s)	121, 560, 719, 757
BfaI	CTAG	3 cut(s)	1053, 1164, 1188
BfmI	CTRYAG	1 cut(s)	1071
BfuI	GTATCC	1 cut(s)	291
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	7 cut(s)	200, 317, 377, 411, 450, 774, 966
BlsI	GCNGC	7 cut(s)	201, 318, 378, 412, 451, 775, 967
Bme18I	GGWCC	1 cut(s)	916
BmeT110I	CYCGRG	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	916
BmiI	GGNNCC	2 cut(s)	457, 815
BmsI	GCATC	4 cut(s)	156, 773, 920, 1252
Bpu14I	TTCGAA	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	861
BsaBI	GATNNNNATC	1 cut(s)	905
BsaI	GGTCTC	1 cut(s)	757
BsaJI	CCNNGG	4 cut(s)	405, 418, 803, 828
BsaWI	WCCGGW	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	6 cut(s)	138, 285, 823, 834, 859, 1053
Bse8I	GATNNNNATC	1 cut(s)	905
BseDI	CCNNGG	4 cut(s)	405, 418, 803, 828
BseGI	GGATG	3 cut(s)	147, 699, 935
BseJI	GATNNNNATC	1 cut(s)	905
BseLI	CCNNNNNNNGG	6 cut(s)	138, 285, 823, 834, 859, 1053
BseMII	CTCAG	3 cut(s)	412, 550, 939
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	5 cut(s)	211, 328, 388, 461, 760
Bsh1236I	CGCG	1 cut(s)	965
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	6 cut(s)	34, 47, 410, 827, 977, 1109
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	2 cut(s)	269, 643
BsiHKCI	CYCGRG	1 cut(s)	636
BsiSI	CCGG	2 cut(s)	168, 691
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	6 cut(s)	138, 285, 823, 834, 859, 1053
BsmAI	GTCTC	4 cut(s)	121, 560, 719, 757
BsmBI	CGTCTC	2 cut(s)	560, 719
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	6 cut(s)	34, 47, 410, 827, 977, 1109
Bso31I	GGTCTC	1 cut(s)	757
BsoBI	CYCGRG	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	672
Bsp1286I	GDGCHC	3 cut(s)	269, 643, 704
Bsp19I	CCATGG	2 cut(s)	405, 803
BspACI	CCGC	6 cut(s)	295, 411, 965, 968, 1028, 1103
BspANI	GGCC	6 cut(s)	34, 47, 410, 827, 977, 1109
BspCNI	CTCAG	3 cut(s)	411, 549, 940
BspFNI	CGCG	1 cut(s)	965
BspHI	TCATGA	2 cut(s)	96, 1249
BspLI	GGNNCC	2 cut(s)	457, 815
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	3 cut(s)	98, 396, 677
BspQI	GCTCTTC	1 cut(s)	870
BspT104I	TTCGAA	1 cut(s)	672
BspTNI	GGTCTC	1 cut(s)	757
BsrBI	CCGCTC	1 cut(s)	295
BssECI	CCNNGG	4 cut(s)	405, 418, 803, 828
BssT1I	CCWWGG	2 cut(s)	405, 803
Bst4CI	ACNGT	3 cut(s)	115, 422, 709
Bst6I	CTCTTC	3 cut(s)	246, 870, 878
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstBI	TTCGAA	1 cut(s)	672
BstC8I	GCNNGC	4 cut(s)	184, 945, 963, 975
BstDEI	CTNAG	3 cut(s)	398, 536, 948
BstDSI	CCRYGG	4 cut(s)	405, 418, 803, 828
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstF5I	GGATG	3 cut(s)	147, 699, 935
BstFNI	CGCG	1 cut(s)	965
BstHHI	GCGC	1 cut(s)	842
BstMAI	GTCTC	4 cut(s)	121, 560, 719, 757
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 770, 974, 1070
BstNSI	RCATGY	2 cut(s)	894, 1097
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	965
BstV1I	GCAGC	5 cut(s)	211, 328, 388, 461, 760
BstX2I	RGATCY	4 cut(s)	103, 220, 401, 682
BstXI	CCANNNNNNTGG	1 cut(s)	926
BstYI	RGATCY	4 cut(s)	103, 220, 401, 682
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	6 cut(s)	34, 47, 410, 827, 977, 1109
BtgI	CCRYGG	4 cut(s)	405, 418, 803, 828
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	147, 699, 935
Cac8I	GCNNGC	4 cut(s)	184, 945, 963, 975
CaiI	CAGNNNCTG	1 cut(s)	848
CciI	TCATGA	2 cut(s)	96, 1249
CfoI	GCGC	1 cut(s)	842
Cfr13I	GGNCC	1 cut(s)	916
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	605, 740
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviQI	GTAC	2 cut(s)	605, 740
DdeI	CTNAG	3 cut(s)	398, 536, 948
EaeI	YGGCCR	3 cut(s)	408, 975, 1107
Eam1104I	CTCTTC	3 cut(s)	246, 870, 878
EarI	CTCTTC	3 cut(s)	246, 870, 878
Ecl136II	GAGCTC	1 cut(s)	641
Eco130I	CCWWGG	2 cut(s)	405, 803
Eco147I	AGGCCT	1 cut(s)	34
Eco24I	GRGCYC	2 cut(s)	643, 704
Eco31I	GGTCTC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	916
Eco53kI	GAGCTC	1 cut(s)	641
Eco88I	CYCGRG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	641
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoRI	GAATTC	1 cut(s)	1201
EcoT14I	CCWWGG	2 cut(s)	405, 803
EcoT38I	GRGCYC	2 cut(s)	643, 704
ErhI	CCWWGG	2 cut(s)	405, 803
Esp3I	CGTCTC	2 cut(s)	560, 719
FaqI	GGGAC	1 cut(s)	49
FauI	CCCGC	1 cut(s)	961
Fnu4HI	GCNGC	7 cut(s)	200, 317, 377, 411, 450, 774, 966
FokI	GGATG	3 cut(s)	134, 706, 942
FriOI	GRGCYC	2 cut(s)	643, 704
Fsp4HI	GCNGC	7 cut(s)	200, 317, 377, 411, 450, 774, 966
FspBI	CTAG	3 cut(s)	1053, 1164, 1188
GlaI	GCGC	1 cut(s)	841
GluI	GCNGC	7 cut(s)	200, 317, 377, 411, 450, 774, 966
HaeIII	GGCC	6 cut(s)	34, 47, 410, 827, 977, 1109
HapII	CCGG	2 cut(s)	168, 691
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	842
Hin6I	GCGC	1 cut(s)	840
HinP1I	GCGC	1 cut(s)	840
HindIII	AAGCTT	4 cut(s)	258, 341, 541, 782
HinfI	GANTC	4 cut(s)	548, 596, 819, 1171
HpaII	CCGG	2 cut(s)	168, 691
HphI	GGTGA	3 cut(s)	434, 635, 1042
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	401, 539
Hpy188III	TCNNGA	9 cut(s)	89, 97, 140, 151, 636, 724, 869, 878, 1250
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	4 cut(s)	804, 827, 932, 1243
HpyCH4III	ACNGT	3 cut(s)	115, 422, 709
HpyCH4IV	ACGT	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 770, 974, 1070
HpyF3I	CTNAG	3 cut(s)	398, 536, 948
HpySE526I	ACGT	1 cut(s)	468
HspAI	GCGC	1 cut(s)	840
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	3 cut(s)	369, 455, 793
Lsp1109I	GCAGC	5 cut(s)	211, 328, 388, 461, 760
LweI	GCATC	4 cut(s)	156, 773, 920, 1252
MaeI	CTAG	3 cut(s)	1053, 1164, 1188
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	109, 190
MbiI	CCGCTC	1 cut(s)	295
MboII	GAAGA	8 cut(s)	11, 233, 598, 857, 895, 1003, 1197, 1210
MflI	RGATCY	4 cut(s)	103, 220, 401, 682
MhlI	GDGCHC	3 cut(s)	269, 643, 704
MlsI	TGGCCA	2 cut(s)	977, 1109
MluCI	AATT	5 cut(s)	50, 674, 1178, 1201, 1285
MluNI	TGGCCA	2 cut(s)	977, 1109
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	2 cut(s)	977, 1109
MscI	TGGCCA	2 cut(s)	977, 1109
MseI	TTAA	5 cut(s)	339, 348, 614, 1146, 1288
MslI	CAYNNNNRTG	2 cut(s)	1098, 1248
Msp20I	TGGCCA	2 cut(s)	977, 1109
MspI	CCGG	2 cut(s)	168, 691
Mva1269I	GAATGC	1 cut(s)	389
MvnI	CGCG	1 cut(s)	965
MwoI	GCNNNNNNNGC	4 cut(s)	455, 770, 974, 1070
NcoI	CCATGG	2 cut(s)	405, 803
NlaIV	GGNNCC	2 cut(s)	457, 815
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	2 cut(s)	894, 1097
NspV	TTCGAA	1 cut(s)	672
PaeR7I	CTCGAG	1 cut(s)	636
PagI	TCATGA	2 cut(s)	96, 1249
PceI	AGGCCT	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	870
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	4 cut(s)	548, 596, 819, 1171
PkrI	GCNGC	7 cut(s)	201, 318, 378, 412, 451, 775, 967
Ple19I	CGATCG	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	457, 815
PspPI	GGNCC	1 cut(s)	916
PstI	CTGCAG	1 cut(s)	1075
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	4 cut(s)	103, 220, 401, 682
PvuI	CGATCG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	606, 741
RsaNI	GTAC	2 cut(s)	605, 740
RseI	CAYNNNNRTG	2 cut(s)	1098, 1248
SacI	GAGCTC	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	5 cut(s)	339, 348, 614, 1146, 1288
SatI	GCNGC	7 cut(s)	200, 317, 377, 411, 450, 774, 966
Sau96I	GGNCC	1 cut(s)	916
SduI	GDGCHC	3 cut(s)	269, 643, 704
SfaNI	GCATC	4 cut(s)	156, 773, 920, 1252
SfcI	CTRYAG	1 cut(s)	1071
Sfr274I	CTCGAG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	672
SinI	GGWCC	1 cut(s)	916
SlaI	CTCGAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	1098, 1248
SmlI	CTYRAG	2 cut(s)	636, 876
SmoI	CTYRAG	2 cut(s)	636, 876
Sse9I	AATT	5 cut(s)	50, 674, 1178, 1201, 1285
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	6 cut(s)	295, 411, 965, 968, 1028, 1103
SspMI	CTAG	3 cut(s)	1053, 1164, 1188
SstI	GAGCTC	1 cut(s)	643
StuI	AGGCCT	1 cut(s)	34
StyI	CCWWGG	2 cut(s)	405, 803
TaaI	ACNGT	3 cut(s)	115, 422, 709
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	8 cut(s)	291, 381, 500, 637, 672, 723, 870, 1134
TasI	AATT	5 cut(s)	50, 674, 1178, 1201, 1285
TauI	GCSGC	2 cut(s)	413, 968
TfiI	GAWTC	4 cut(s)	548, 596, 819, 1171
Tru1I	TTAA	5 cut(s)	339, 348, 614, 1146, 1288
Tru9I	TTAA	5 cut(s)	339, 348, 614, 1146, 1288
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	5 cut(s)	199, 316, 376, 449, 773
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	588, 746, 1197
TspGWI	ACGGA	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	916
XagI	CCTNNNNNAGG	1 cut(s)	857
XapI	RAATTY	2 cut(s)	50, 1201
XceI	RCATGY	2 cut(s)	894, 1097
XhoI	CTCGAG	1 cut(s)	636
XspI	CTAG	3 cut(s)	1053, 1164, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.