Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016794

Physical Location & Seq

Genomic Coordinates Reverse (-)

44496330 .. 44497550

Gene Structure 1221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034537

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGGCCGAATTCGATATTCCGTCCCACTTTCTCTGCCCCATCTCTCTTGAAGTCATGAGAGATCCCGTCACGGATCGGGAAAGCATCGAGAGATGGTTATCGTCCGGCAAGAACAAGGCTTGCCCTGTCACCAAACAACAATTGTTCGACGCAGATCTCACTCCCAACCACAATCTTCGTCGCATAATCCAAGCTTGGTGCACCCTCAACGCATCTGATAGGGTCGAGAGGATACCAACGCCGACATCGCAGCTTGACAAGACCCAGATCGTTAAGCTGATCGACCAAGCGAGGAAGCTCCCCCACACGCAGCTCCAATGCCTCAAAAGGCTCAGATCCCTGGCCGTAAACCACGGTGAAAGACACAAGAACTCTTTGGAGGCAGCAGGAGCAGTAGAATACGTTGCTTGTTCGATAAGCAACGCCGACCAATCCATAATGAAAGTGGCTGTCGAAGTCTTGTTCCATCTCAGAAGTTCGGAATCTCGTCTCAAAGATCTAATGAGCAAAGATGGGGAGACGATCATAGATTCATTGGTGCAAGTATTAAAACGAGGTGATTACCAATCTCGAGCTCGTGCAACTATTTTATTGAGGTCTGTTTTCAAATTGGCAAATCCGATGCGGTTGATGAGTGCCACAGTTGACTTATTCATCGAGACAATGAATGTGGTACGAGATCAGATCTCACAGCAAGCATTTAAAGCCTCATTGAAGCTTCTTGTGGAGCTATGTCCATGGGGAAGGAACCGAATAAAGGCCGTGGAAGGAGGGGCAGTTTCGATCCTCATAGAGGCTCTTCTCGAGACTCAAGAGAAGAGGGCATGTGAGCTGATACTAATCTCTTTGGACCAGCTCTGTCGATGCGCGGAAGGGCGAGCCGAGTTATTGAGGCAAGCGGCGGGGCTAGCCATCGTGTCCAAGAAGATATTTAGGGTTTCGCACGTGGCGAGCGACAGGGCGGTGAGGATATTGTTTTCCATTTGTAGGTTCTCTGCAACTTCTGCAGTTGTTATGGAAATGTTGCAAGTAGGTGTGGTGGCCAAGTTGTGTTTAGTGCTTCAAGTGGATTGTAGGTTTAAGACCAAAGAGAAGGCTAGGGAGATTCTCAAATTGCACTCTAGGGTTTGGAAGAGTTCTCCATGCGTTCCTGCTCATTTGTTGTCCTTTTATCCACCTACATCGTCTTCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

400

Amino Acids

44.77

Weight (kDa)

9.34

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	7 - 69	6e-13	U-box domain
ARM_PUB	PF25598	90 - 389	2.9e-77	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016794)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26340
malus_domestica	MD03G1156000.v1.1 MD11G1173600.v1.1
prunus_persica	Prupe.6G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0048581
rosa_laevigata	RLG00000034537
rosa_multiflora	Rmu_sc0007341.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033250
rosa_rugosa	Rorug05G0239700
rosa_samantha	Rh5AG319300 Rh5BG329700 Rh5DG340900
rosa_wichuraiana	Rw0G021250 Rw5G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	872
AciI	CCGC	5 cut(s)	628, 872, 902, 905, 965
AclWI	GGATC	4 cut(s)	59, 84, 333, 781
AcoI	YGGCCR	2 cut(s)	345, 1044
AcsI	RAATTY	1 cut(s)	11
AcvI	CACGTG	1 cut(s)	949
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	3 cut(s)	760, 796, 990
AgsI	TTSAA	4 cut(s)	53, 610, 718, 1067
AjnI	CCWGG	1 cut(s)	342
Alw21I	GWGCWC	2 cut(s)	206, 580
Alw26I	GTCTC	4 cut(s)	497, 515, 656, 803
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	4 cut(s)	59, 84, 333, 781
Ama87I	CYCGRG	2 cut(s)	573, 806
AoxI	GGCC	4 cut(s)	6, 345, 762, 1044
ApaLI	GTGCAC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	253, 313, 386
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	872
AspS9I	GGNCC	1 cut(s)	853
AsuHPI	GGTGA	4 cut(s)	124, 371, 572, 979
AsuNHI	GCTAGC	1 cut(s)	910
AvaI	CYCGRG	2 cut(s)	573, 806
AvaII	GGWCC	1 cut(s)	853
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	1046
BanII	GRGCYC	1 cut(s)	580
BauI	CACGAG	1 cut(s)	579
BbrPI	CACGTG	1 cut(s)	949
BbsI	GAAGAC	1 cut(s)	1182
Bbv12I	GWGCWC	2 cut(s)	206, 580
BbvI	GCAGC	3 cut(s)	265, 325, 398
BccI	CCATC	5 cut(s)	50, 90, 477, 509, 923
BceAI	ACGGC	2 cut(s)	332, 749
BciT130I	CCWGG	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	228
BcoDI	GTCTC	4 cut(s)	497, 515, 656, 803
BfaI	CTAG	3 cut(s)	911, 1101, 1125
BfmI	CTRYAG	1 cut(s)	1008
BfuI	GTATCC	1 cut(s)	228
BglII	AGATCT	3 cut(s)	157, 499, 687
BisI	GCNGC	4 cut(s)	254, 314, 387, 903
BlsI	GCNGC	4 cut(s)	255, 315, 388, 904
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	853
BmeT110I	CYCGRG	2 cut(s)	573, 806
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	1 cut(s)	752
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	4 cut(s)	96, 224, 615, 857
BmtI	GCTAGC	1 cut(s)	914
BpiI	GAAGAC	1 cut(s)	1182
BpuEI	CTTGAG	1 cut(s)	798
BsaAI	YACGTR	1 cut(s)	949
BsaBI	GATNNNNATC	2 cut(s)	100, 842
BsaJI	CCNNGG	4 cut(s)	342, 355, 740, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	760, 796, 990
Bse8I	GATNNNNATC	2 cut(s)	100, 842
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	4 cut(s)	342, 355, 740, 765
BseJI	GATNNNNATC	2 cut(s)	100, 842
BseLI	CCNNNNNNNGG	3 cut(s)	760, 796, 990
BseMII	CTCAG	2 cut(s)	349, 487
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	265, 325, 398
Bsh1236I	CGCG	1 cut(s)	872
BshFI	GGCC	4 cut(s)	8, 347, 764, 1046
BsiHKAI	GWGCWC	2 cut(s)	206, 580
BsiHKCI	CYCGRG	2 cut(s)	573, 806
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	760, 796, 990
BsmAI	GTCTC	4 cut(s)	497, 515, 656, 803
BsmBI	CGTCTC	2 cut(s)	497, 515
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	8, 347, 764, 1046
BsoBI	CYCGRG	2 cut(s)	573, 806
Bsp1286I	GDGCHC	2 cut(s)	206, 580
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	5 cut(s)	628, 872, 902, 905, 965
BspANI	GGCC	4 cut(s)	8, 347, 764, 1046
BspCNI	CTCAG	2 cut(s)	348, 486
BspFNI	CGCG	1 cut(s)	872
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	752
BspMAI	CTGCAG	1 cut(s)	1012
BspOI	GCTAGC	1 cut(s)	914
BspPI	GGATC	4 cut(s)	59, 84, 333, 781
BspQI	GCTCTTC	1 cut(s)	807
BssECI	CCNNGG	4 cut(s)	342, 355, 740, 765
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	740
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	359, 646
Bst6I	CTCTTC	3 cut(s)	807, 815, 1130
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstBAI	YACGTR	1 cut(s)	949
BstC8I	GCNNGC	6 cut(s)	124, 699, 882, 900, 912, 955
BstDEI	CTNAG	2 cut(s)	335, 473
BstDSI	CCRYGG	3 cut(s)	355, 740, 765
BstENI	CCTNNNNNAGG	1 cut(s)	794
BstFNI	CGCG	1 cut(s)	872
BstHHI	GCGC	1 cut(s)	872
BstMAI	GTCTC	4 cut(s)	497, 515, 656, 803
BstMWI	GCNNNNNNNGC	5 cut(s)	250, 392, 707, 911, 1007
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	831
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	1008
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	3 cut(s)	265, 325, 398
BstV2I	GAAGAC	1 cut(s)	1182
BstX2I	RGATCY	5 cut(s)	64, 157, 338, 499, 687
BstYI	RGATCY	5 cut(s)	64, 157, 338, 499, 687
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	8, 347, 764, 1046
BtgI	CCRYGG	3 cut(s)	355, 740, 765
BtgZI	GCGATG	1 cut(s)	234
Cac8I	GCNNGC	6 cut(s)	124, 699, 882, 900, 912, 955
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	1 cut(s)	872
Cfr13I	GGNCC	1 cut(s)	853
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	677
CspCI	CAANNNNNGTGG	2 cut(s)	654, 689
CviAII	CATG	4 cut(s)	58, 741, 828, 1146
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	2 cut(s)	335, 473
DraI	TTTAAA	1 cut(s)	706
EaeI	YGGCCR	2 cut(s)	345, 1044
Eam1104I	CTCTTC	3 cut(s)	807, 815, 1130
EarI	CTCTTC	3 cut(s)	807, 815, 1130
Ecl136II	GAGCTC	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	853
Eco53kI	GAGCTC	1 cut(s)	578
Eco72I	CACGTG	1 cut(s)	949
Eco88I	CYCGRG	2 cut(s)	573, 806
EcoICRI	GAGCTC	1 cut(s)	578
EcoNI	CCTNNNNNAGG	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	740
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	740
Esp3I	CGTCTC	2 cut(s)	497, 515
FaeI	CATG	4 cut(s)	61, 744, 831, 1149
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	4 cut(s)	57, 740, 827, 1145
FauI	CCCGC	1 cut(s)	898
Fnu4HI	GCNGC	4 cut(s)	254, 314, 387, 903
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	4 cut(s)	254, 314, 387, 903
FspBI	CTAG	3 cut(s)	911, 1101, 1125
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	4 cut(s)	254, 314, 387, 903
HaeIII	GGCC	4 cut(s)	8, 347, 764, 1046
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	872
Hin1II	CATG	4 cut(s)	61, 744, 831, 1149
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	2 cut(s)	195, 719
HinfI	GANTC	4 cut(s)	485, 533, 811, 1108
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	4 cut(s)	124, 371, 572, 979
Hpy166II	GTNNAC	3 cut(s)	204, 352, 649
Hpy188I	TCNGA	6 cut(s)	220, 338, 476, 484, 624, 687
Hpy8I	GTNNAC	3 cut(s)	204, 352, 649
Hpy99I	CGWCG	2 cut(s)	155, 186
HpyAV	CCTTC	4 cut(s)	741, 764, 869, 1090
HpyCH4III	ACNGT	2 cut(s)	359, 646
HpyCH4IV	ACGT	2 cut(s)	405, 948
HpyCH4V	TGCA	7 cut(s)	204, 544, 584, 1001, 1010, 1030, 1120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	250, 392, 707, 911, 1007
HpyF3I	CTNAG	2 cut(s)	335, 473
HpySE526I	ACGT	2 cut(s)	405, 948
Hsp92II	CATG	4 cut(s)	61, 744, 831, 1149
HspAI	GCGC	1 cut(s)	870
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	4 cut(s)	306, 321, 392, 730
LpnPI	CCDG	9 cut(s)	121, 141, 281, 329, 356, 375, 869, 946, 1167
Lsp1109I	GCAGC	3 cut(s)	265, 325, 398
LweI	GCATC	4 cut(s)	96, 224, 615, 857
MaeI	CTAG	3 cut(s)	911, 1101, 1125
MaeII	ACGT	2 cut(s)	405, 948
MaeIII	GTNAC	2 cut(s)	70, 130
MboII	GAAGA	6 cut(s)	170, 794, 832, 940, 1147, 1182
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	5 cut(s)	64, 157, 338, 499, 687
MhlI	GDGCHC	2 cut(s)	206, 580
MlsI	TGGCCA	1 cut(s)	1046
MluCI	AATT	4 cut(s)	11, 143, 611, 1115
MluNI	TGGCCA	1 cut(s)	1046
MlyI	GAGTC	1 cut(s)	805
Mox20I	TGGCCA	1 cut(s)	1046
MscI	TGGCCA	1 cut(s)	1046
MseI	TTAA	4 cut(s)	276, 551, 705, 1083
Msp20I	TGGCCA	1 cut(s)	1046
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	872
MwoI	GCNNNNNNNGC	5 cut(s)	250, 392, 707, 911, 1007
NcoI	CCATGG	1 cut(s)	740
NheI	GCTAGC	1 cut(s)	910
NlaIII	CATG	4 cut(s)	61, 744, 831, 1149
NlaIV	GGNNCC	1 cut(s)	752
NmeAIII	GCCGAG	1 cut(s)	910
NmuCI	GTSAC	2 cut(s)	70, 130
NspI	RCATGY	1 cut(s)	831
PaeR7I	CTCGAG	2 cut(s)	573, 806
PagI	TCATGA	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	3 cut(s)	950, 954, 1193
PfeI	GAWTC	3 cut(s)	485, 533, 1108
PkrI	GCNGC	4 cut(s)	255, 315, 388, 904
PleI	GAGTC	1 cut(s)	805
PmaCI	CACGTG	1 cut(s)	949
PmlI	CACGTG	1 cut(s)	949
PpsI	GAGTC	1 cut(s)	805
Ppu21I	YACGTR	1 cut(s)	949
Psp124BI	GAGCTC	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	342
PspCI	CACGTG	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	752
PspPI	GGNCC	1 cut(s)	853
PstI	CTGCAG	1 cut(s)	1012
PsuI	RGATCY	5 cut(s)	64, 157, 338, 499, 687
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SacI	GAGCTC	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	4 cut(s)	276, 551, 705, 1083
SatI	GCNGC	4 cut(s)	254, 314, 387, 903
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	206, 580
SfaNI	GCATC	4 cut(s)	96, 224, 615, 857
SfcI	CTRYAG	1 cut(s)	1008
Sfr274I	CTCGAG	2 cut(s)	573, 806
SinI	GGWCC	1 cut(s)	853
SlaI	CTCGAG	2 cut(s)	573, 806
SmlI	CTYRAG	3 cut(s)	573, 806, 813
SmoI	CTYRAG	3 cut(s)	573, 806, 813
Sse9I	AATT	4 cut(s)	11, 143, 611, 1115
SsiI	CCGC	5 cut(s)	628, 872, 902, 905, 965
SspMI	CTAG	3 cut(s)	911, 1101, 1125
SstI	GAGCTC	1 cut(s)	580
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	2 cut(s)	359, 646
TaiI	ACGT	2 cut(s)	408, 951
TasI	AATT	4 cut(s)	11, 143, 611, 1115
TauI	GCSGC	1 cut(s)	905
TfiI	GAWTC	3 cut(s)	485, 533, 1108
Tru1I	TTAA	4 cut(s)	276, 551, 705, 1083
Tru9I	TTAA	4 cut(s)	276, 551, 705, 1083
TseFI	GTSAC	2 cut(s)	70, 130
TseI	GCWGC	3 cut(s)	253, 313, 386
Tsp45I	GTSAC	2 cut(s)	70, 130
TspDTI	ATGAA	4 cut(s)	458, 525, 646, 683
TspGWI	ACGGA	2 cut(s)	12, 89
VneI	GTGCAC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	853
XagI	CCTNNNNNAGG	1 cut(s)	794
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	831
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XhoI	CTCGAG	2 cut(s)	573, 806
XspI	CTAG	3 cut(s)	911, 1101, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.