Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016794

Physical Location & Seq

Genomic Coordinates Reverse (-)

18230691 .. 18231877

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1156000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGGAAATCGATATTCCTTCGCATTTTACCTGCCCAATTTCATTAGAAATCATGAGAGATCCGGTCACGATCTCAACCGGTATAACATCTCACTCCCAACCACTCTCTCCTCCGCATAATCCAAGCTTGGTGCACTCTCAACTCTTCGCATGGCGTCGAGCGGATACCAACTCCGACATTCAAGGCGAAAGGAACAAGAACTGTTTGAAGGCAGCAGGGGCAATCGAATTTGTGGCCTCCATTATCAACAAAAGTCACTCCGATTCATCTACAACCGAAGTCGCTATTGAAGTCCTTTTTCATCTCAAAAGCTCAGAATCTCGTCTAAAAGATCTCTTGAGCAATGACAGCAACAGTAATAAGATAACGGAGTCTCTGGTCAGAGTATTGAATTGCGGGAATTACCAATCTCGAGCTCATGCAATAATCTTATTGAAGTCTTTTTTCGAGGTGGCAGATCCGGTCCAGTTGATAAGTGTGGACGTTCGGTCATTCCGCCAGATAGTGCATGTGCTAAATGATCAGATCTCACAACAAGCGTCAATGGCGGCATTGAAGCCTCTCGTGGAGCTTTGTCCGTGGGGAAGGAACCGAATCAAAGCCGTCGAAGGGGGTGCAGTTTCGGTCCCCACGGAGGCTCTTCTCGAGATGCAAAAGAAAAGAGCGTGTGAGCTGATACTAATGGCTTTGGAACAGCTTTGTCGATGTGCGGAAGGGCGAGCTGAGCTGTTGAAGCATGGGGCAGGGCTAGCCATTGTGTCCAAGAAAATCCTTAGGGTTTCACATGTGGCAAGTGATCGGGCGGAAATGTTGCAAGTGGGTGTTGTGGCCAAATTGTGTTTGGTGCTTCAAGTGGATTGTAGGTTTAAATCAAAGAAGGCTGGGAGGTTCTTAGCTTGCACTCTAGAGTTCGGAAGAATTCTTCATGCATTCCTGTCCATTTGCTGCCCTTTTATCCATCTTCATCTTCATGATGCTCATATCTTCTTCTTATTTTTTATTTTCATCAAATCATTAATTCTCCCTGTATCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

347

Amino Acids

38.39

Weight (kDa)

8.58

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	63 - 269	4.2e-42	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016794)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26340
malus_domestica	MD03G1156000.v1.1 MD11G1173600.v1.1
prunus_persica	Prupe.6G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0048581
rosa_laevigata	RLG00000034537
rosa_multiflora	Rmu_sc0007341.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033250
rosa_rugosa	Rorug05G0239700
rosa_samantha	Rh5AG319300 Rh5BG329700 Rh5DG340900
rosa_wichuraiana	Rw0G021250 Rw5G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	7 cut(s)	116, 164, 399, 499, 551, 713, 806
AclWI	GGATC	2 cut(s)	56, 455
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	2 cut(s)	230, 921
AcyI	GRCGYC	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	612, 637
AflIII	ACRYGT	1 cut(s)	787
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	8 cut(s)	185, 211, 293, 394, 439, 559, 736, 854
AhdI	GACNNNNNGTC	1 cut(s)	490
AluBI	AGCT	9 cut(s)	129, 315, 419, 574, 676, 700, 725, 730, 899
AluI	AGCT	9 cut(s)	129, 315, 419, 574, 676, 700, 725, 730, 899
Alw21I	GWGCWC	2 cut(s)	138, 421
Alw26I	GTCTC	1 cut(s)	381
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	56, 455
Ama87I	CYCGRG	2 cut(s)	414, 647
AoxI	GGCC	2 cut(s)	237, 831
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	215, 948
ApoI	RAATTY	2 cut(s)	230, 921
AseI	ATTAAT	1 cut(s)	1019
AsiGI	ACCGGT	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	466, 628
AsuNHI	GCTAGC	1 cut(s)	751
AvaI	CYCGRG	2 cut(s)	414, 647
AvaII	GGWCC	2 cut(s)	466, 628
AxyI	CCTNAGG	1 cut(s)	776
BaeGI	GKGCMC	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	138, 421
BbvI	GCAGC	2 cut(s)	227, 935
BccI	CCATC	1 cut(s)	969
BceAI	ACGGC	1 cut(s)	590
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciVI	GTATCC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	2 cut(s)	752, 908
BfuAI	ACCTGC	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	160
BglII	AGATCT	2 cut(s)	334, 528
BisI	GCNGC	3 cut(s)	216, 552, 949
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	3 cut(s)	217, 553, 950
Bme18I	GGWCC	2 cut(s)	466, 628
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmeT110I	CYCGRG	2 cut(s)	414, 647
BmgT120I	GGNCC	2 cut(s)	466, 628
BmiI	GGNNCC	2 cut(s)	593, 630
BmsI	GCATC	2 cut(s)	642, 967
BmtI	GCTAGC	1 cut(s)	755
Bpu1102I	GCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	361
Bsa29I	ATCGAT	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	581, 633
BsaWI	WCCGGW	3 cut(s)	64, 80, 463
Bsc4I	CCNNNNNNNGG	2 cut(s)	612, 637
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	469
Bse21I	CCTNAGG	1 cut(s)	776
Bse3DI	GCAATG	1 cut(s)	352
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	581, 633
BseLI	CCNNNNNNNGG	2 cut(s)	612, 637
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	330, 717
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	227, 935
BseYI	CCCAGC	1 cut(s)	884
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	2 cut(s)	239, 833
BshTI	ACCGGT	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	138, 421
BsiHKCI	CYCGRG	2 cut(s)	414, 647
BsiSI	CCGG	3 cut(s)	65, 81, 464
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	612, 637
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	932
BsnI	GGCC	2 cut(s)	239, 833
BsoBI	CYCGRG	2 cut(s)	414, 647
Bsp1286I	GDGCHC	2 cut(s)	138, 421
Bsp143I	GATC	7 cut(s)	61, 72, 334, 460, 523, 528, 799
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	7 cut(s)	116, 164, 399, 499, 551, 713, 806
BspANI	GGCC	2 cut(s)	239, 833
BspCNI	CTCAG	2 cut(s)	329, 718
BspDI	ATCGAT	1 cut(s)	12
BspHI	TCATGA	2 cut(s)	54, 973
BspLI	GGNNCC	2 cut(s)	593, 630
BspMI	ACCTGC	1 cut(s)	41
BspOI	GCTAGC	1 cut(s)	755
BspPI	GGATC	2 cut(s)	56, 455
BspQI	GCTCTTC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	469
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	581, 633
BssMI	GATC	7 cut(s)	61, 72, 334, 460, 523, 528, 799
BssNI	GRCGYC	1 cut(s)	157
BssSI	CACGAG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	566
Bst4CI	ACNGT	2 cut(s)	206, 359
Bst6I	CTCTTC	2 cut(s)	152, 648
BstACI	GRCGYC	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	723, 753, 901
BstDEI	CTNAG	4 cut(s)	316, 726, 776, 895
BstDSI	CCRYGG	2 cut(s)	581, 633
BstKTI	GATC	7 cut(s)	64, 75, 337, 463, 526, 531, 802
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	7 cut(s)	61, 72, 334, 460, 523, 528, 799
BstMWI	GCNNNNNNNGC	6 cut(s)	221, 351, 548, 727, 736, 752
BstNSI	RCATGY	2 cut(s)	515, 791
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	227, 935
BstX2I	RGATCY	4 cut(s)	61, 334, 460, 528
BstYI	RGATCY	4 cut(s)	61, 334, 460, 528
Bsu15I	ATCGAT	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	776
BsuI	GTATCC	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	239, 833
BsuTUI	ATCGAT	1 cut(s)	12
BtgI	CCRYGG	2 cut(s)	581, 633
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	723, 753, 901
CciI	TCATGA	2 cut(s)	54, 973
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	466, 628
ClaI	ATCGAT	1 cut(s)	12
CseI	GACGC	2 cut(s)	146, 531
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	8 cut(s)	55, 153, 422, 512, 740, 788, 929, 974
DdeI	CTNAG	4 cut(s)	316, 726, 776, 895
DpnI	GATC	7 cut(s)	63, 74, 336, 462, 525, 530, 801
DpnII	GATC	7 cut(s)	61, 72, 334, 460, 523, 528, 799
DraI	TTTAAA	1 cut(s)	871
DriI	GACNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	2 cut(s)	152, 648
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	2 cut(s)	152, 648
EciI	GGCGGA	2 cut(s)	488, 821
Ecl136II	GAGCTC	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	421
Eco47I	GGWCC	2 cut(s)	466, 628
Eco53kI	GAGCTC	1 cut(s)	419
Eco81I	CCTNAGG	1 cut(s)	776
Eco88I	CYCGRG	2 cut(s)	414, 647
EcoICRI	GAGCTC	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	921
EcoT22I	ATGCAT	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	8 cut(s)	58, 156, 425, 515, 743, 791, 932, 977
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	8 cut(s)	54, 152, 421, 511, 739, 787, 928, 973
FauI	CCCGC	1 cut(s)	392
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	216, 552, 949
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	3 cut(s)	216, 552, 949
FspBI	CTAG	2 cut(s)	752, 908
GluI	GCNGC	3 cut(s)	216, 552, 949
GsaI	CCCAGC	1 cut(s)	888
HaeIII	GGCC	2 cut(s)	239, 833
HapII	CCGG	3 cut(s)	65, 81, 464
HgaI	GACGC	2 cut(s)	146, 531
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	8 cut(s)	58, 156, 425, 515, 743, 791, 932, 977
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	4 cut(s)	266, 320, 374, 597
HpaII	CCGG	3 cut(s)	65, 81, 464
Hpy166II	GTNNAC	2 cut(s)	136, 484
Hpy188I	TCNGA	6 cut(s)	178, 265, 319, 386, 528, 917
Hpy188III	TCNNGA	8 cut(s)	55, 70, 340, 414, 647, 649, 908, 974
Hpy8I	GTNNAC	2 cut(s)	136, 484
Hpy99I	CGWCG	2 cut(s)	162, 611
HpyAV	CCTTC	6 cut(s)	30, 205, 582, 605, 710, 874
HpyCH4III	ACNGT	2 cut(s)	206, 359
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	8 cut(s)	136, 425, 511, 620, 655, 817, 903, 932
HpyF10VI	GCNNNNNNNGC	6 cut(s)	221, 351, 548, 727, 736, 752
HpyF3I	CTNAG	4 cut(s)	316, 726, 776, 895
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	8 cut(s)	58, 156, 425, 515, 743, 791, 932, 977
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	7 cut(s)	61, 72, 334, 460, 523, 528, 799
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	2 cut(s)	227, 935
LweI	GCATC	2 cut(s)	642, 967
MaeI	CTAG	2 cut(s)	752, 908
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	67, 257
MalI	GATC	7 cut(s)	63, 74, 336, 462, 525, 530, 801
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	7 cut(s)	61, 72, 334, 460, 523, 528, 799
MboII	GAAGA	8 cut(s)	139, 635, 917, 930, 956, 962, 979, 982
MflI	RGATCY	4 cut(s)	61, 334, 460, 528
MhlI	GDGCHC	2 cut(s)	138, 421
MlsI	TGGCCA	1 cut(s)	833
MluCI	AATT	8 cut(s)	39, 230, 394, 403, 836, 921, 1020, 1036
MluNI	TGGCCA	1 cut(s)	833
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	6 cut(s)	123, 250, 445, 573, 631, 882
Mox20I	TGGCCA	1 cut(s)	833
Mph1103I	ATGCAT	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	833
MseI	TTAA	3 cut(s)	870, 1019, 1039
MslI	CAYNNNNRTG	1 cut(s)	972
Msp20I	TGGCCA	1 cut(s)	833
MspI	CCGG	3 cut(s)	65, 81, 464
Mva1269I	GAATGC	1 cut(s)	932
MwoI	GCNNNNNNNGC	6 cut(s)	221, 351, 548, 727, 736, 752
NdeII	GATC	7 cut(s)	61, 72, 334, 460, 523, 528, 799
NheI	GCTAGC	1 cut(s)	751
NlaIII	CATG	8 cut(s)	58, 156, 425, 515, 743, 791, 932, 977
NlaIV	GGNNCC	2 cut(s)	593, 630
NmuCI	GTSAC	2 cut(s)	67, 257
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	2 cut(s)	515, 791
PaeR7I	CTCGAG	2 cut(s)	414, 647
PagI	TCATGA	2 cut(s)	54, 973
PciI	ACATGT	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	648
PctI	GAATGC	1 cut(s)	932
PfeI	GAWTC	3 cut(s)	266, 320, 597
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	217, 553, 950
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PscI	ACATGT	1 cut(s)	787
PshBI	ATTAAT	1 cut(s)	1019
Psp124BI	GAGCTC	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	884
PspN4I	GGNNCC	2 cut(s)	593, 630
PspPI	GGNCC	2 cut(s)	466, 628
PsuI	RGATCY	4 cut(s)	61, 334, 460, 528
RseI	CAYNNNNRTG	1 cut(s)	972
SacI	GAGCTC	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	3 cut(s)	870, 1019, 1039
SatI	GCNGC	3 cut(s)	216, 552, 949
Sau3AI	GATC	7 cut(s)	61, 72, 334, 460, 523, 528, 799
Sau96I	GGNCC	2 cut(s)	466, 628
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	2 cut(s)	138, 421
SfaNI	GCATC	2 cut(s)	642, 967
Sfr274I	CTCGAG	2 cut(s)	414, 647
SinI	GGWCC	2 cut(s)	466, 628
SlaI	CTCGAG	2 cut(s)	414, 647
SmiMI	CAYNNNNRTG	1 cut(s)	972
SmlI	CTYRAG	3 cut(s)	340, 414, 647
SmoI	CTYRAG	3 cut(s)	340, 414, 647
Sse9I	AATT	8 cut(s)	39, 230, 394, 403, 836, 921, 1020, 1036
SsiI	CCGC	7 cut(s)	116, 164, 399, 499, 551, 713, 806
SspMI	CTAG	2 cut(s)	752, 908
SstI	GAGCTC	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	206, 359
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	9 cut(s)	12, 160, 228, 415, 450, 609, 648, 706, 1034
TaqII	GACCGA	2 cut(s)	480, 616
TasI	AATT	8 cut(s)	39, 230, 394, 403, 836, 921, 1020, 1036
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	3 cut(s)	266, 320, 597
Tru1I	TTAA	3 cut(s)	870, 1019, 1039
Tru9I	TTAA	3 cut(s)	870, 1019, 1039
TseFI	GTSAC	2 cut(s)	67, 257
TseI	GCWGC	2 cut(s)	215, 948
Tsp45I	GTSAC	2 cut(s)	67, 257
TspDTI	ATGAA	7 cut(s)	33, 258, 293, 917, 956, 962, 997
TspGWI	ACGGA	3 cut(s)	386, 570, 650
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	466, 628
VspI	ATTAAT	1 cut(s)	1019
XapI	RAATTY	2 cut(s)	230, 921
XbaI	TCTAGA	1 cut(s)	907
XceI	RCATGY	2 cut(s)	515, 791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XhoI	CTCGAG	2 cut(s)	414, 647
XspI	CTAG	2 cut(s)	752, 908
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.