Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016794

Physical Location & Seq

Genomic Coordinates Forward (+)

47951890 .. 47953053

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAGAGATCCCGTCACGGTCTCTACTGGGATTACATACGATCGGGAAAGCATCGAGAGATGGTTATCGTCCGGCAAGAACAAGGCTTGCCCTGTCACCAAACAACAATTGTTCGACGCAGATCTCACTCCCAACCACAATCTTCGTCGCATAATCCAAGCTTGGTGCACCCTCAACGCATCTCATGGGGTCGAGCGGATACCAACGCCGACATCGCAGCTTGACAAGACCCAGATCGTTAAGCTGATCGACCAAGCGAGGAAGCTCCCCCACACGCAGCTCCTATGCCTCAAAAAGCTCAGATCCCTGTCCGTAAACCACTGTGAAAGAAACAAGAACTCTTTGGAGGCAGCAGGAGCAGTAGAATACGTTGCTTCTTTGATAAGCAACGTCGACCAATCCATAATGAAAGTGGCTGTCGAAGTCCTGTTCCATCTCAGAAGCTCGGAATCTCGTCTCAAAGATCTAATGAGCAAAGATGGGGAGAAGATCATAGATTCATTGGTGCAATTATTAAAACGAGGTGATTACCAATCCCGAGCTCATGCAACTATTTTATTGAGGTCTGTTTTCGAATTGGCAAATCCGATGAGGTTGATGAGTGCCACAGTTGAGTTATTCATCGAGACTATGAATGTCGTACGGGATCAGATCTCACAGCAAGCATTTAAAGCTGCATTGAAGCTTCTTGTGGAGCTATGTCCATGGGGAAGGAACCGAATAAAGGCCGTGGAAGGAGGCGCAGTTTCGATCCTCATAGAGGCTCTTCTCGAGACTCAAGAGAAGAGGGCATGTGAGCTGATACTAATCTCTTTGGACCAGCTCTGTCGATGCGCGGAAGGGCGAGCCGAGTTATTGAGGCACGCGGCGGGGCTAGCCATCGTGTCCAAGAAGATATTTAGGGTTTCTCACGTGGCGAGCGACAGGGCGGTGAGGATATTGTTTTCCATTTGTAGGTTCTCTGCAACTTCAGCAGTTGTTATGGACATGTTGCAAGTAGGTGTGGTGGCCAAGTTGTGTTTAGTGCTTCAAGTGGATTGTAGGTTTAAGACCAAAGAGAAGGCTAGGGAGGTTCTCAAATTGCACTCTAGGGTTTGGAAGAGTTCTCCCTGCGTTCCTGCTCATTTGTTGTCCTTTTATCCACCTACATCGTCTTCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

387

Amino Acids

43.29

Weight (kDa)

9.48

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	1 - 57	1.8e-13	U-box domain
ARM_PUB	PF25598	78 - 377	1.3e-78	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016794)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26340
malus_domestica	MD03G1156000.v1.1 MD11G1173600.v1.1
prunus_persica	Prupe.6G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0048581
rosa_laevigata	RLG00000034537
rosa_multiflora	Rmu_sc0007341.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033250
rosa_rugosa	Rorug05G0239700
rosa_samantha	Rh5AG319300 Rh5BG329700 Rh5DG340900
rosa_wichuraiana	Rw0G021250 Rw5G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	2 cut(s)	836, 866
AciI	CCGC	5 cut(s)	196, 836, 866, 869, 929
AclWI	GGATC	4 cut(s)	2, 297, 654, 745
AcoI	YGGCCR	1 cut(s)	1008
AcuI	CTGAAG	1 cut(s)	954
AcvI	CACGTG	1 cut(s)	913
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	3 cut(s)	724, 760, 954
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	2 cut(s)	682, 1031
Alw21I	GWGCWC	2 cut(s)	170, 544
Alw26I	GTCTC	4 cut(s)	25, 461, 620, 767
Alw44I	GTGCAC	1 cut(s)	166
AlwI	GGATC	4 cut(s)	2, 297, 654, 745
Ama87I	CYCGRG	2 cut(s)	537, 770
AoxI	GGCC	2 cut(s)	726, 1008
ApaLI	GTGCAC	1 cut(s)	166
ApeKI	GCWGC	4 cut(s)	217, 277, 350, 674
AspLEI	GCGC	2 cut(s)	743, 836
AspS9I	GGNCC	1 cut(s)	817
AsuHPI	GGTGA	3 cut(s)	88, 536, 943
AsuII	TTCGAA	1 cut(s)	573
AsuNHI	GCTAGC	1 cut(s)	874
AvaI	CYCGRG	2 cut(s)	537, 770
AvaII	GGWCC	1 cut(s)	817
BaeGI	GKGCMC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	1010
BanII	GRGCYC	1 cut(s)	544
BbrPI	CACGTG	1 cut(s)	913
BbsI	GAAGAC	1 cut(s)	1146
Bbv12I	GWGCWC	2 cut(s)	170, 544
BbvI	GCAGC	4 cut(s)	229, 289, 362, 661
BccI	CCATC	4 cut(s)	54, 441, 473, 887
BceAI	ACGGC	1 cut(s)	713
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	4 cut(s)	25, 461, 620, 767
BfaI	CTAG	3 cut(s)	875, 1065, 1089
BfuI	GTATCC	1 cut(s)	192
BglII	AGATCT	3 cut(s)	121, 463, 651
BisI	GCNGC	5 cut(s)	218, 278, 351, 675, 867
BlsI	GCNGC	5 cut(s)	219, 279, 352, 676, 868
Bme18I	GGWCC	1 cut(s)	817
BmeT110I	CYCGRG	2 cut(s)	537, 770
BmgT120I	GGNCC	1 cut(s)	817
BmiI	GGNNCC	1 cut(s)	716
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	60, 188, 821
BmtI	GCTAGC	1 cut(s)	878
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	1146
Bpu14I	TTCGAA	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	762
BsaAI	YACGTR	1 cut(s)	913
BsaBI	GATNNNNATC	2 cut(s)	64, 806
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	704, 729
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	724, 760, 954
Bse1I	ACTGG	1 cut(s)	31
Bse8I	GATNNNNATC	2 cut(s)	64, 806
BseDI	CCNNGG	2 cut(s)	704, 729
BseJI	GATNNNNATC	2 cut(s)	64, 806
BseLI	CCNNNNNNNGG	3 cut(s)	724, 760, 954
BseMII	CTCAG	2 cut(s)	313, 451
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	4 cut(s)	229, 289, 362, 661
Bsh1236I	CGCG	2 cut(s)	836, 866
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	728, 1010
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	170, 544
BsiHKCI	CYCGRG	2 cut(s)	537, 770
BsiSI	CCGG	1 cut(s)	72
BsiWI	CGTACG	1 cut(s)	640
BslI	CCNNNNNNNGG	3 cut(s)	724, 760, 954
BsmAI	GTCTC	4 cut(s)	25, 461, 620, 767
BsmBI	CGTCTC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	728, 1010
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	2 cut(s)	537, 770
Bsp119I	TTCGAA	1 cut(s)	573
Bsp1286I	GDGCHC	2 cut(s)	170, 544
Bsp19I	CCATGG	1 cut(s)	704
BspACI	CCGC	5 cut(s)	196, 836, 866, 869, 929
BspANI	GGCC	2 cut(s)	728, 1010
BspCNI	CTCAG	2 cut(s)	312, 450
BspFNI	CGCG	2 cut(s)	836, 866
BspLI	GGNNCC	1 cut(s)	716
BspOI	GCTAGC	1 cut(s)	878
BspPI	GGATC	4 cut(s)	2, 297, 654, 745
BspQI	GCTCTTC	1 cut(s)	771
BspT104I	TTCGAA	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	704, 729
BssT1I	CCWWGG	1 cut(s)	704
Bst4CI	ACNGT	3 cut(s)	19, 323, 610
Bst6I	CTCTTC	3 cut(s)	771, 779, 1094
BstBAI	YACGTR	1 cut(s)	913
BstBI	TTCGAA	1 cut(s)	573
BstC8I	GCNNGC	6 cut(s)	88, 663, 846, 864, 876, 919
BstDEI	CTNAG	2 cut(s)	299, 437
BstDSI	CCRYGG	2 cut(s)	704, 729
BstENI	CCTNNNNNAGG	1 cut(s)	758
BstFNI	CGCG	2 cut(s)	836, 866
BstHHI	GCGC	2 cut(s)	743, 836
BstMAI	GTCTC	4 cut(s)	25, 461, 620, 767
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 356, 671, 875, 971
BstNSI	RCATGY	2 cut(s)	795, 991
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	2 cut(s)	836, 866
BstV1I	GCAGC	4 cut(s)	229, 289, 362, 661
BstV2I	GAAGAC	1 cut(s)	1146
BstX2I	RGATCY	5 cut(s)	7, 121, 302, 463, 651
BstYI	RGATCY	5 cut(s)	7, 121, 302, 463, 651
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	728, 1010
BtgI	CCRYGG	2 cut(s)	704, 729
BtgZI	GCGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	6 cut(s)	88, 663, 846, 864, 876, 919
CfoI	GCGC	2 cut(s)	743, 836
Cfr13I	GGNCC	1 cut(s)	817
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	5 cut(s)	185, 545, 705, 792, 988
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	2 cut(s)	299, 437
DraI	TTTAAA	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	1008
Eam1104I	CTCTTC	3 cut(s)	771, 779, 1094
EarI	CTCTTC	3 cut(s)	771, 779, 1094
Ecl136II	GAGCTC	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	817
Eco53kI	GAGCTC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	954
Eco72I	CACGTG	1 cut(s)	913
Eco88I	CYCGRG	2 cut(s)	537, 770
EcoICRI	GAGCTC	1 cut(s)	542
EcoNI	CCTNNNNNAGG	1 cut(s)	758
EcoT14I	CCWWGG	1 cut(s)	704
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	704
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	5 cut(s)	188, 548, 708, 795, 991
FatI	CATG	5 cut(s)	184, 544, 704, 791, 987
FauI	CCCGC	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	5 cut(s)	218, 278, 351, 675, 867
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	5 cut(s)	218, 278, 351, 675, 867
FspBI	CTAG	3 cut(s)	875, 1065, 1089
GlaI	GCGC	2 cut(s)	742, 835
GluI	GCNGC	5 cut(s)	218, 278, 351, 675, 867
HaeIII	GGCC	2 cut(s)	728, 1010
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	743, 836
Hin1II	CATG	5 cut(s)	188, 548, 708, 795, 991
Hin6I	GCGC	2 cut(s)	741, 834
HinP1I	GCGC	2 cut(s)	741, 834
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	159, 683
HinfI	GANTC	3 cut(s)	449, 497, 775
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	88, 536, 943
Hpy166II	GTNNAC	3 cut(s)	168, 316, 394
Hpy188I	TCNGA	5 cut(s)	302, 440, 448, 588, 651
Hpy188III	TCNNGA	7 cut(s)	44, 55, 537, 625, 770, 772, 779
Hpy8I	GTNNAC	3 cut(s)	168, 316, 394
Hpy99I	CGWCG	3 cut(s)	119, 150, 395
HpyAV	CCTTC	4 cut(s)	705, 728, 833, 1054
HpyCH4III	ACNGT	3 cut(s)	19, 323, 610
HpyCH4IV	ACGT	3 cut(s)	369, 390, 912
HpyCH4V	TGCA	7 cut(s)	168, 508, 548, 677, 965, 994, 1084
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 356, 671, 875, 971
HpyF3I	CTNAG	2 cut(s)	299, 437
HpySE526I	ACGT	3 cut(s)	369, 390, 912
Hsp92II	CATG	5 cut(s)	188, 548, 708, 795, 991
HspAI	GCGC	2 cut(s)	741, 834
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	4 cut(s)	270, 285, 356, 694
Lsp1109I	GCAGC	4 cut(s)	229, 289, 362, 661
LweI	GCATC	3 cut(s)	60, 188, 821
MaeI	CTAG	3 cut(s)	875, 1065, 1089
MaeII	ACGT	3 cut(s)	369, 390, 912
MaeIII	GTNAC	2 cut(s)	13, 94
MbiI	CCGCTC	1 cut(s)	196
MboII	GAAGA	7 cut(s)	134, 499, 758, 796, 904, 1111, 1146
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	5 cut(s)	7, 121, 302, 463, 651
MhlI	GDGCHC	2 cut(s)	170, 544
MlsI	TGGCCA	1 cut(s)	1010
MluCI	AATT	4 cut(s)	107, 509, 575, 1079
MluNI	TGGCCA	1 cut(s)	1010
MlyI	GAGTC	1 cut(s)	769
Mox20I	TGGCCA	1 cut(s)	1010
MscI	TGGCCA	1 cut(s)	1010
MseI	TTAA	4 cut(s)	240, 515, 669, 1047
Msp20I	TGGCCA	1 cut(s)	1010
MspI	CCGG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	836, 866
MwoI	GCNNNNNNNGC	5 cut(s)	214, 356, 671, 875, 971
NcoI	CCATGG	1 cut(s)	704
NheI	GCTAGC	1 cut(s)	874
NlaIII	CATG	5 cut(s)	188, 548, 708, 795, 991
NlaIV	GGNNCC	1 cut(s)	716
NmeAIII	GCCGAG	1 cut(s)	874
NmuCI	GTSAC	2 cut(s)	13, 94
NspI	RCATGY	2 cut(s)	795, 991
NspV	TTCGAA	1 cut(s)	573
PaeR7I	CTCGAG	1 cut(s)	770
PciI	ACATGT	1 cut(s)	987
PciSI	GCTCTTC	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	918
PfeI	GAWTC	2 cut(s)	449, 497
Pfl23II	CGTACG	1 cut(s)	640
PkrI	GCNGC	5 cut(s)	219, 279, 352, 676, 868
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	1 cut(s)	769
PmaCI	CACGTG	1 cut(s)	913
PmlI	CACGTG	1 cut(s)	913
PpsI	GAGTC	1 cut(s)	769
Ppu21I	YACGTR	1 cut(s)	913
PscI	ACATGT	1 cut(s)	987
Psp124BI	GAGCTC	1 cut(s)	544
PspCI	CACGTG	1 cut(s)	913
PspLI	CGTACG	1 cut(s)	640
PspN4I	GGNNCC	1 cut(s)	716
PspPI	GGNCC	1 cut(s)	817
PsuI	RGATCY	5 cut(s)	7, 121, 302, 463, 651
PvuI	CGATCG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SacI	GAGCTC	1 cut(s)	544
SalI	GTCGAC	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	4 cut(s)	240, 515, 669, 1047
SatI	GCNGC	5 cut(s)	218, 278, 351, 675, 867
Sau96I	GGNCC	1 cut(s)	817
SchI	GAGTC	1 cut(s)	769
SduI	GDGCHC	2 cut(s)	170, 544
SfaNI	GCATC	3 cut(s)	60, 188, 821
Sfr274I	CTCGAG	1 cut(s)	770
SfuI	TTCGAA	1 cut(s)	573
SinI	GGWCC	1 cut(s)	817
SlaI	CTCGAG	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	770, 777
SmoI	CTYRAG	2 cut(s)	770, 777
Sse9I	AATT	4 cut(s)	107, 509, 575, 1079
SsiI	CCGC	5 cut(s)	196, 836, 866, 869, 929
SspMI	CTAG	3 cut(s)	875, 1065, 1089
SstI	GAGCTC	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	3 cut(s)	19, 323, 610
TaiI	ACGT	3 cut(s)	372, 393, 915
TasI	AATT	4 cut(s)	107, 509, 575, 1079
TauI	GCSGC	1 cut(s)	869
TfiI	GAWTC	2 cut(s)	449, 497
Tru1I	TTAA	4 cut(s)	240, 515, 669, 1047
Tru9I	TTAA	4 cut(s)	240, 515, 669, 1047
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	2 cut(s)	13, 94
TseI	GCWGC	4 cut(s)	217, 277, 350, 674
Tsp45I	GTSAC	2 cut(s)	13, 94
TspDTI	ATGAA	4 cut(s)	422, 489, 610, 647
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	817
XagI	CCTNNNNNAGG	1 cut(s)	758
XceI	RCATGY	2 cut(s)	795, 991
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	3 cut(s)	875, 1065, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.