Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00978

Orthogroup ID

OG0016794

Physical Location & Seq

Genomic Coordinates Reverse (-)

72175 .. 73575

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAGGCCGAATTTGATATTCCGTCCCACTTTCTCTGCCCCATCTCTCTTGAAGTCATGAGAGATCCCGTTACGGTCTCTACTGGGATTACATACGATCGGGAAAGCATTGAGAGATGGTTATCGTCCGGCAAGAACAAGGCTTGCCCTGTCACCAGACAACAATTGTTCGACGCAGATCTTACTCCCAACCACAATCTTCGTCGCATAATCCAAGCTTGGTGCACCCTCAACGCATCTCATGGGGTCGAGCGGATACCAACGCCGACATCGCAGCTTGACAAGACCCAGATCGTTAAGCTGATCGACCAAACGAGGAAGCTCCCCCACACGCAGCTCCAATGCCTCAAAAGGCTCAGATCCCTGGCCTTGAACCACGGTGAAAGAAACAAGAACTCTTTGGAGGCAGCAGGAGCAGTAGAATACGTTGCTTCTTTGATAAGCAACGCCGACCAATCCATAATGAAAGTGGCTGTCGAAGTCTTGTTCCATCTCAGAAGCTCGGAATCTCGTCTCAAAGATCTAATGAGCAAAGATGGGGAGAAGATCATAGATTCATTGGTGCAAGTGTTAAAACGAGGTGATTACCAATCTCGAGCTCATGCAACTATTTTATTGAGGTCTGTTTTCGAATTGGCAAATCCGATGCGGTTGATGAGTGCCACAGTTGAGTTATTCATCGAGACTATGAATATGGTGCGAGATCAGATCTCACAGCAAGCATTTAAAGCTGCATTGAAGCTTCTTGTGGAGCTATGTCCATGGGGAAGGAACCGAATAAAGGCCGTGGAAGGAGGCGCAGTTTCGATCCTCATAGAGGCTCTTCTCGAGACTCAAGAGAAGAGGGCATGTGAGCTGATACTAATCTCTTTGGACCAGCTCTGTCGATGCGCGGAAGGGCGAGCCGAGTTATTGAGGCACGCGGCAGGGCTAGCCATCGTGTCCAAGAAGATATTTAGGGTTTCGCACGTGGCGAGCGACAGGGCGGTGAGGATATTGTTTTCCATTTGTAGGTTCTCTGCAACTTCTGCATTTGTTATGGAAATGTTGCAAGTAGGTGTGGTGGCCAAGTTGTGTTTAGTGCTTCAAGTGGATTGTAGGTTTAAGACCAAAGAGAAGGCTAGGGAGATTCTCAAATTGCACTCTAGGGTTTGGAAGAGTTCTCCATGCGTTCCTGCTCATTTGTTGTCCTTTTATCCACCTACATCGTCTTCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

406

Amino Acids

45.58

Weight (kDa)

9.25

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	7 - 76	5.9e-21	U-box domain
ARM_PUB	PF25598	97 - 396	1.2e-80	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	98 - 293	3.6e-07	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016794)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26340
malus_domestica	MD03G1156000.v1.1 MD11G1173600.v1.1
prunus_persica	Prupe.6G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0048581
rosa_laevigata	RLG00000034537
rosa_multiflora	Rmu_sc0007341.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033250
rosa_rugosa	Rorug05G0239700
rosa_samantha	Rh5AG319300 Rh5BG329700 Rh5DG340900
rosa_wichuraiana	Rw0G021250 Rw5G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	253
AccII	CGCG	2 cut(s)	893, 923
AciI	CCGC	5 cut(s)	253, 649, 893, 923, 986
AclWI	GGATC	3 cut(s)	59, 354, 802
AcoI	YGGCCR	1 cut(s)	1065
AcsI	RAATTY	1 cut(s)	11
AcvI	CACGTG	1 cut(s)	970
AfiI	CCNNNNNNNGG	3 cut(s)	781, 817, 1011
AgsI	TTSAA	4 cut(s)	53, 373, 739, 1088
AjnI	CCWGG	1 cut(s)	363
Alw21I	GWGCWC	2 cut(s)	227, 601
Alw26I	GTCTC	4 cut(s)	82, 518, 677, 824
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	3 cut(s)	59, 354, 802
Ama87I	CYCGRG	2 cut(s)	594, 827
AoxI	GGCC	4 cut(s)	6, 366, 783, 1065
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	274, 334, 407, 731
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	800, 893
AspS9I	GGNCC	1 cut(s)	874
AsuHPI	GGTGA	4 cut(s)	145, 392, 593, 1000
AsuII	TTCGAA	1 cut(s)	630
AsuNHI	GCTAGC	1 cut(s)	931
AvaI	CYCGRG	2 cut(s)	594, 827
AvaII	GGWCC	1 cut(s)	874
BaeGI	GKGCMC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	1067
BanII	GRGCYC	1 cut(s)	601
BbrPI	CACGTG	1 cut(s)	970
BbsI	GAAGAC	1 cut(s)	1203
Bbv12I	GWGCWC	2 cut(s)	227, 601
BbvI	GCAGC	4 cut(s)	286, 346, 419, 718
BccI	CCATC	5 cut(s)	50, 111, 498, 530, 944
BceAI	ACGGC	1 cut(s)	770
BciT130I	CCWGG	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	4 cut(s)	82, 518, 677, 824
BfaI	CTAG	3 cut(s)	932, 1122, 1146
BfuI	GTATCC	1 cut(s)	249
BglII	AGATCT	3 cut(s)	178, 520, 708
BisI	GCNGC	5 cut(s)	275, 335, 408, 732, 924
BlsI	GCNGC	5 cut(s)	276, 336, 409, 733, 925
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	874
BmeT110I	CYCGRG	2 cut(s)	594, 827
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	773
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	245, 636, 878
BmtI	GCTAGC	1 cut(s)	935
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	1203
Bpu14I	TTCGAA	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	970
BsaBI	GATNNNNATC	2 cut(s)	121, 863
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	4 cut(s)	363, 376, 761, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	781, 817, 1011
Bse1I	ACTGG	1 cut(s)	88
Bse8I	GATNNNNATC	2 cut(s)	121, 863
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	4 cut(s)	363, 376, 761, 786
BseJI	GATNNNNATC	2 cut(s)	121, 863
BseLI	CCNNNNNNNGG	3 cut(s)	781, 817, 1011
BseMII	CTCAG	2 cut(s)	370, 508
BseNI	ACTGG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	286, 346, 419, 718
Bsh1236I	CGCG	2 cut(s)	893, 923
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	4 cut(s)	8, 368, 785, 1067
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	227, 601
BsiHKCI	CYCGRG	2 cut(s)	594, 827
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	781, 817, 1011
BsmAI	GTCTC	4 cut(s)	82, 518, 677, 824
BsmBI	CGTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	8, 368, 785, 1067
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	2 cut(s)	594, 827
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	2 cut(s)	227, 601
Bsp19I	CCATGG	1 cut(s)	761
BspACI	CCGC	5 cut(s)	253, 649, 893, 923, 986
BspANI	GGCC	4 cut(s)	8, 368, 785, 1067
BspCNI	CTCAG	2 cut(s)	369, 507
BspFNI	CGCG	2 cut(s)	893, 923
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	773
BspOI	GCTAGC	1 cut(s)	935
BspPI	GGATC	3 cut(s)	59, 354, 802
BspQI	GCTCTTC	1 cut(s)	828
BspT104I	TTCGAA	1 cut(s)	630
BspTNI	GGTCTC	1 cut(s)	82
BsrBI	CCGCTC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	4 cut(s)	363, 376, 761, 786
BssT1I	CCWWGG	1 cut(s)	761
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	3 cut(s)	76, 380, 667
Bst6I	CTCTTC	3 cut(s)	828, 836, 1151
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstBAI	YACGTR	1 cut(s)	970
BstBI	TTCGAA	1 cut(s)	630
BstC8I	GCNNGC	6 cut(s)	145, 720, 903, 921, 933, 976
BstDEI	CTNAG	2 cut(s)	356, 494
BstDSI	CCRYGG	3 cut(s)	376, 761, 786
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstFNI	CGCG	2 cut(s)	893, 923
BstHHI	GCGC	2 cut(s)	800, 893
BstMAI	GTCTC	4 cut(s)	82, 518, 677, 824
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 413, 728, 932, 1028
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	852
BstSCI	CCNGG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	2 cut(s)	893, 923
BstV1I	GCAGC	4 cut(s)	286, 346, 419, 718
BstV2I	GAAGAC	1 cut(s)	1203
BstX2I	RGATCY	5 cut(s)	64, 178, 359, 520, 708
BstYI	RGATCY	5 cut(s)	64, 178, 359, 520, 708
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	4 cut(s)	8, 368, 785, 1067
BtgI	CCRYGG	3 cut(s)	376, 761, 786
BtgZI	GCGATG	1 cut(s)	255
Cac8I	GCNNGC	6 cut(s)	145, 720, 903, 921, 933, 976
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	2 cut(s)	800, 893
Cfr13I	GGNCC	1 cut(s)	874
CseI	GACGC	1 cut(s)	182
CviAII	CATG	6 cut(s)	58, 242, 602, 762, 849, 1167
DdeI	CTNAG	2 cut(s)	356, 494
DraI	TTTAAA	1 cut(s)	727
EaeI	YGGCCR	1 cut(s)	1065
Eam1104I	CTCTTC	3 cut(s)	828, 836, 1151
EarI	CTCTTC	3 cut(s)	828, 836, 1151
Ecl136II	GAGCTC	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	761
Eco24I	GRGCYC	1 cut(s)	601
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	874
Eco53kI	GAGCTC	1 cut(s)	599
Eco72I	CACGTG	1 cut(s)	970
Eco88I	CYCGRG	2 cut(s)	594, 827
EcoICRI	GAGCTC	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	761
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	761
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	6 cut(s)	61, 245, 605, 765, 852, 1170
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	6 cut(s)	57, 241, 601, 761, 848, 1166
Fnu4HI	GCNGC	5 cut(s)	275, 335, 408, 732, 924
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	5 cut(s)	275, 335, 408, 732, 924
FspBI	CTAG	3 cut(s)	932, 1122, 1146
GlaI	GCGC	2 cut(s)	799, 892
GluI	GCNGC	5 cut(s)	275, 335, 408, 732, 924
HaeIII	GGCC	4 cut(s)	8, 368, 785, 1067
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	800, 893
Hin1II	CATG	6 cut(s)	61, 245, 605, 765, 852, 1170
Hin6I	GCGC	2 cut(s)	798, 891
HinP1I	GCGC	2 cut(s)	798, 891
HindIII	AAGCTT	2 cut(s)	216, 740
HinfI	GANTC	4 cut(s)	506, 554, 832, 1129
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	4 cut(s)	145, 392, 593, 1000
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	5 cut(s)	359, 497, 505, 645, 708
Hpy188III	TCNNGA	8 cut(s)	50, 58, 101, 594, 682, 827, 829, 836
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	2 cut(s)	176, 207
HpyAV	CCTTC	4 cut(s)	762, 785, 890, 1111
HpyCH4III	ACNGT	3 cut(s)	76, 380, 667
HpyCH4IV	ACGT	2 cut(s)	426, 969
HpyCH4V	TGCA	8 cut(s)	225, 565, 605, 734, 1022, 1031, 1051, 1141
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 413, 728, 932, 1028
HpyF3I	CTNAG	2 cut(s)	356, 494
HpySE526I	ACGT	2 cut(s)	426, 969
Hsp92II	CATG	6 cut(s)	61, 245, 605, 765, 852, 1170
HspAI	GCGC	2 cut(s)	798, 891
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	4 cut(s)	327, 342, 413, 751
Lsp1109I	GCAGC	4 cut(s)	286, 346, 419, 718
LweI	GCATC	3 cut(s)	245, 636, 878
MaeI	CTAG	3 cut(s)	932, 1122, 1146
MaeII	ACGT	2 cut(s)	426, 969
MaeIII	GTNAC	2 cut(s)	70, 151
MbiI	CCGCTC	1 cut(s)	253
MboII	GAAGA	7 cut(s)	191, 556, 815, 853, 961, 1168, 1203
MfeI	CAATTG	1 cut(s)	164
MflI	RGATCY	5 cut(s)	64, 178, 359, 520, 708
MhlI	GDGCHC	2 cut(s)	227, 601
MlsI	TGGCCA	1 cut(s)	1067
MluCI	AATT	4 cut(s)	11, 164, 632, 1136
MluNI	TGGCCA	1 cut(s)	1067
MlyI	GAGTC	1 cut(s)	826
Mox20I	TGGCCA	1 cut(s)	1067
MscI	TGGCCA	1 cut(s)	1067
MseI	TTAA	4 cut(s)	297, 572, 726, 1104
Msp20I	TGGCCA	1 cut(s)	1067
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	365
MunI	CAATTG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	365
MvnI	CGCG	2 cut(s)	893, 923
MwoI	GCNNNNNNNGC	5 cut(s)	271, 413, 728, 932, 1028
NcoI	CCATGG	1 cut(s)	761
NheI	GCTAGC	1 cut(s)	931
NlaIII	CATG	6 cut(s)	61, 245, 605, 765, 852, 1170
NlaIV	GGNNCC	1 cut(s)	773
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	852
NspV	TTCGAA	1 cut(s)	630
PaeR7I	CTCGAG	2 cut(s)	594, 827
PagI	TCATGA	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	2 cut(s)	971, 975
PfeI	GAWTC	3 cut(s)	506, 554, 1129
PkrI	GCNGC	5 cut(s)	276, 336, 409, 733, 925
Ple19I	CGATCG	1 cut(s)	100
PleI	GAGTC	1 cut(s)	826
PmaCI	CACGTG	1 cut(s)	970
PmlI	CACGTG	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	826
Ppu21I	YACGTR	1 cut(s)	970
Psp124BI	GAGCTC	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	363
PspCI	CACGTG	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	773
PspPI	GGNCC	1 cut(s)	874
PsuI	RGATCY	5 cut(s)	64, 178, 359, 520, 708
PvuI	CGATCG	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	601
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	297, 572, 726, 1104
SatI	GCNGC	5 cut(s)	275, 335, 408, 732, 924
Sau96I	GGNCC	1 cut(s)	874
SchI	GAGTC	1 cut(s)	826
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	227, 601
SfaNI	GCATC	3 cut(s)	245, 636, 878
Sfr274I	CTCGAG	2 cut(s)	594, 827
SfuI	TTCGAA	1 cut(s)	630
SinI	GGWCC	1 cut(s)	874
SlaI	CTCGAG	2 cut(s)	594, 827
SmlI	CTYRAG	3 cut(s)	594, 827, 834
SmoI	CTYRAG	3 cut(s)	594, 827, 834
Sse9I	AATT	4 cut(s)	11, 164, 632, 1136
SsiI	CCGC	5 cut(s)	253, 649, 893, 923, 986
SspMI	CTAG	3 cut(s)	932, 1122, 1146
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	761
TaaI	ACNGT	3 cut(s)	76, 380, 667
TaiI	ACGT	2 cut(s)	429, 972
TasI	AATT	4 cut(s)	11, 164, 632, 1136
TauI	GCSGC	1 cut(s)	926
TfiI	GAWTC	3 cut(s)	506, 554, 1129
Tru1I	TTAA	4 cut(s)	297, 572, 726, 1104
Tru9I	TTAA	4 cut(s)	297, 572, 726, 1104
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	4 cut(s)	274, 334, 407, 731
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	479, 546, 667, 704
TspGWI	ACGGA	1 cut(s)	12
VneI	GTGCAC	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	874
XagI	CCTNNNNNAGG	1 cut(s)	815
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XhoI	CTCGAG	2 cut(s)	594, 827
XspI	CTAG	3 cut(s)	932, 1122, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.