Prupe.6G145300_v2.0.a1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
11924232 .. 11925458
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G145300.1

Sequence Viewer

Length: 1227 bp
ATGGAGGAAGTCGATATTCCTTCCCATTTTCTGTGTCCAATTTCATTGGAAATCATGAGAGATCCCGTCACCATCTCAACGGGGATCACATACGATCGAGAAAGCATCGAGAGATGGTTATTCTCAGGCAAGAACAAGGCTTGCCCCGTCACGAAACAGCCCTTGTTCGACGGCACAGATCTCACTCCCAACCACACTCTCCGCCGCATAATCCAAGCTTGGTGCACCCTCAACGCTTCGCAAGGCGTCGAGCGGATACCAACCCCAAAGTCTCCGCTCGACAAATCCCAGATCGTTAAGCTCATCGAACAAGCCAAGAAATTGCCTAACACCAACCTCCATTGCCTCCGGAGGCTCAGATCCATTGCCATAACACAAAGCGAAAGGACCAAGAGCTGCTTGGAGGCTGCAGGAGCAGTCGAATACGTGGCCTCAATAATCAACAAGGCTCCCTCTGATGATCCATCTATAATCGAAGTCGCTGTTGAAGTCTTGTTTCTTCTGAAAGGCTCGGAAGCTGGCCTCAAAGATCTCATAAGCAACGATGGCGATAATAATATCGTGGAGTCTTTGGTCAAAGCATTGAAATTCAAGAATTTCCAATCTCGAGCTCACGCAATAATTCTATTGAAGTCTGTTTTCAAAGTGGCAGATCCAATCCAGTTGATGAGCGCCAAGGTTGAGTGCTTCCACGAGATACTACATGTGCTGGATGATCGGATTTCACAACAAGCGTCCAAGGCGGCATTGAAGCTTCTTGTGGAGCTCTGTCCATGGGGAAGAAACCGAATCAAAGCCGTGGAAGGCGGCGCAGTTGCTGTCCTCATAGAGGCTCTTCTTGAGACACATGAAAAAAGAGCGAGTGAGCTGATACTAATCCTTTTGGATCAGCTTTGTGGATGTGCAGAAGGGCGAGCTGAATTGTTGAAGCATGCGGCTGGGCTAGCCATTGTGTCCAAGAAGATCCTTAGGGTTTCGCACGTGGCGAGTGACCGCGCAGTGAGGATATTGTCCTCCATCTGTAGATTTTCTGCAACTTGTGGTGTTCTTCAGGAAATGTTGCAAGTGGGTGTTGTGGCCAAGTTGTGTTTGGTGCTTCAAGTGGATTGTAGGTTTAAGACCAAGGAGAAGGCAAGGGAGGTTCTCAAATTGCACTCCAGAGTTTGGAAGAATTCTTCATGCATTCCTGGTCATTTGTTGCCTTTTTATCCATCTTCATCTTCATGA

Protein Analysis

409

Amino Acids

45.07

Weight (kDa)

8.92

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016794)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26340
malus_domestica MD03G1156000.v1.1 MD11G1173600.v1.1
prunus_persica Prupe.6G145300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0048581
rosa_laevigata RLG00000034537
rosa_multiflora Rmu_sc0007341.1_g000023
rosa_roxburghii Rroxscaffold_1G00033250
rosa_rugosa Rorug05G0239700
rosa_samantha Rh5AG319300 Rh5BG329700 Rh5DG340900
rosa_wichuraiana Rw0G021250 Rw5G029860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1164
AccBSI CCGCTC 2 cut(s) 253, 277
AccII CGCG 1 cut(s) 996
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 8 cut(s) 202, 205, 253, 275, 743, 807, 935, 994
AclWI GGATC 7 cut(s) 56, 92, 354, 455, 647, 894, 958
AcoI YGGCCR 1 cut(s) 1077
AcsI RAATTY 3 cut(s) 587, 595, 1171
AcuI CTGAAG 1 cut(s) 1034
AcvI CACGTG 1 cut(s) 982
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 829, 1164
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 8 cut(s) 488, 586, 592, 631, 643, 751, 928, 1100
AjnI CCWGG 1 cut(s) 1186
Alw21I GWGCWC 3 cut(s) 227, 613, 768
Alw26I GTCTC 2 cut(s) 276, 836
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 7 cut(s) 56, 92, 354, 455, 647, 894, 958
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 606
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 3 cut(s) 429, 520, 1077
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 396, 407
ApoI RAATTY 3 cut(s) 587, 595, 1171
AspLEI GCGC 3 cut(s) 674, 812, 998
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 61
AsuNHI GCTAGC 1 cut(s) 943
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 1 cut(s) 387
AxyI CCTNAGG 1 cut(s) 968
BaeGI GKGCMC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 1079
BanII GRGCYC 2 cut(s) 613, 768
BauI CACGAG 1 cut(s) 692
BbrPI CACGTG 1 cut(s) 982
Bbv12I GWGCWC 3 cut(s) 227, 613, 768
BbvI GCAGC 2 cut(s) 383, 394
BccI CCATC 6 cut(s) 80, 108, 472, 539, 1025, 1219
BceAI ACGGC 2 cut(s) 187, 782
BciT130I CCWGG 1 cut(s) 1188
BciVI GTATCC 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 276, 836
BfaI CTAG 1 cut(s) 944
BfmI CTRYAG 2 cut(s) 408, 1021
BfoI RGCGCY 1 cut(s) 675
BfuI GTATCC 1 cut(s) 249
BglII AGATCT 2 cut(s) 178, 529
BisI GCNGC 6 cut(s) 205, 397, 408, 744, 808, 936
BlsI GCNGC 6 cut(s) 206, 398, 409, 745, 809, 937
Bme1390I CCNGG 1 cut(s) 1188
Bme18I GGWCC 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 1188
BmsI GCATC 1 cut(s) 114
BmtI GCTAGC 1 cut(s) 947
BpmI CTGGAG 1 cut(s) 1141
BpuEI CTTGAG 1 cut(s) 860
BsaAI YACGTR 2 cut(s) 427, 982
BsaBI GATNNNNATC 1 cut(s) 875
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 675, 738, 773, 798, 1122
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 2 cut(s) 829, 1164
Bse1I ACTGG 1 cut(s) 661
Bse21I CCTNAGG 1 cut(s) 968
Bse3DI GCAATG 2 cut(s) 340, 363
Bse8I GATNNNNATC 1 cut(s) 875
BseAI TCCGGA 1 cut(s) 348
BseBI CCWGG 1 cut(s) 1188
BseDI CCNNGG 5 cut(s) 675, 738, 773, 798, 1122
BseGI GGATG 2 cut(s) 718, 905
BseJI GATNNNNATC 1 cut(s) 875
BseLI CCNNNNNNNGG 2 cut(s) 829, 1164
BseMI GCAATG 2 cut(s) 340, 363
BseMII CTCAG 2 cut(s) 138, 370
BseNI ACTGG 1 cut(s) 661
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 2 cut(s) 383, 394
BseYI CCCAGC 1 cut(s) 938
BsgI GTGCAG 1 cut(s) 924
Bsh1236I CGCG 1 cut(s) 996
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 3 cut(s) 431, 522, 1079
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 3 cut(s) 227, 613, 768
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 829, 1164
BsmAI GTCTC 2 cut(s) 276, 836
BsmI GAATGC 1 cut(s) 1182
BsnI GGCC 3 cut(s) 431, 522, 1079
BsoBI CYCGRG 1 cut(s) 606
Bsp1286I GDGCHC 3 cut(s) 227, 613, 768
Bsp13I TCCGGA 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 773
BspACI CCGC 8 cut(s) 202, 205, 253, 275, 743, 807, 935, 994
BspANI GGCC 3 cut(s) 431, 522, 1079
BspCNI CTCAG 2 cut(s) 137, 369
BspEI TCCGGA 1 cut(s) 348
BspFNI CGCG 1 cut(s) 996
BspHI TCATGA 2 cut(s) 54, 1223
BspLI GGNNCC 1 cut(s) 450
BspMAI CTGCAG 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 947
BspPI GGATC 7 cut(s) 56, 92, 354, 455, 647, 894, 958
BspQI GCTCTTC 1 cut(s) 840
BsrBI CCGCTC 2 cut(s) 253, 277
BsrDI GCAATG 2 cut(s) 340, 363
BsrI ACTGG 1 cut(s) 661
BssECI CCNNGG 5 cut(s) 675, 738, 773, 798, 1122
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 692
BssT1I CCWWGG 4 cut(s) 675, 738, 773, 1122
Bst2BI CACGAG 1 cut(s) 692
Bst2UI CCWGG 1 cut(s) 1188
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 1 cut(s) 246
BstBAI YACGTR 2 cut(s) 427, 982
BstC8I GCNNGC 5 cut(s) 142, 520, 915, 933, 945
BstDEI CTNAG 3 cut(s) 124, 356, 968
BstDSI CCRYGG 2 cut(s) 773, 798
BstENI CCTNNNNNAGG 1 cut(s) 827
BstF5I GGATG 2 cut(s) 718, 905
BstFNI CGCG 1 cut(s) 996
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 3 cut(s) 674, 812, 998
BstMAI GTCTC 2 cut(s) 276, 836
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 4 cut(s) 413, 546, 740, 944
BstNI CCWGG 1 cut(s) 1188
BstNSI RCATGY 2 cut(s) 707, 935
BstSCI CCNGG 1 cut(s) 1186
BstSFI CTRYAG 2 cut(s) 408, 1021
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 1 cut(s) 996
BstV1I GCAGC 2 cut(s) 383, 394
BstX2I RGATCY 6 cut(s) 61, 178, 359, 529, 652, 963
BstYI RGATCY 6 cut(s) 61, 178, 359, 529, 652, 963
Bsu36I CCTNAGG 1 cut(s) 968
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 3 cut(s) 431, 522, 1079
BtgI CCRYGG 2 cut(s) 773, 798
BtsCI GGATG 2 cut(s) 718, 905
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 1 cut(s) 1005
Cac8I GCNNGC 5 cut(s) 142, 520, 915, 933, 945
CaiI CAGNNNCTG 1 cut(s) 818
CciI TCATGA 2 cut(s) 54, 1223
CfoI GCGC 3 cut(s) 674, 812, 998
Cfr13I GGNCC 1 cut(s) 387
CseI GACGC 2 cut(s) 235, 723
CviAII CATG 7 cut(s) 55, 704, 774, 848, 932, 1179, 1224
DdeI CTNAG 3 cut(s) 124, 356, 968
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 2 cut(s) 611, 766
Eco130I CCWWGG 4 cut(s) 675, 738, 773, 1122
Eco24I GRGCYC 2 cut(s) 613, 768
Eco47I GGWCC 1 cut(s) 387
Eco53kI GAGCTC 2 cut(s) 611, 766
Eco57I CTGAAG 1 cut(s) 1034
Eco72I CACGTG 1 cut(s) 982
Eco81I CCTNAGG 1 cut(s) 968
Eco88I CYCGRG 1 cut(s) 606
EcoICRI GAGCTC 2 cut(s) 611, 766
EcoNI CCTNNNNNAGG 1 cut(s) 827
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 1 cut(s) 1186
EcoT14I CCWWGG 4 cut(s) 675, 738, 773, 1122
EcoT22I ATGCAT 1 cut(s) 1184
EcoT38I GRGCYC 2 cut(s) 613, 768
ErhI CCWWGG 4 cut(s) 675, 738, 773, 1122
FaeI CATG 7 cut(s) 58, 707, 777, 851, 935, 1182, 1227
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FatI CATG 7 cut(s) 54, 703, 773, 847, 931, 1178, 1223
Fnu4HI GCNGC 6 cut(s) 205, 397, 408, 744, 808, 936
FokI GGATG 2 cut(s) 725, 912
FriOI GRGCYC 2 cut(s) 613, 768
Fsp4HI GCNGC 6 cut(s) 205, 397, 408, 744, 808, 936
FspBI CTAG 1 cut(s) 944
GlaI GCGC 3 cut(s) 673, 811, 997
GluI GCNGC 6 cut(s) 205, 397, 408, 744, 808, 936
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 1141
HaeII RGCGCY 1 cut(s) 675
HaeIII GGCC 3 cut(s) 431, 522, 1079
HapII CCGG 1 cut(s) 349
HgaI GACGC 2 cut(s) 235, 723
HhaI GCGC 3 cut(s) 674, 812, 998
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 7 cut(s) 58, 707, 777, 851, 935, 1182, 1227
Hin6I GCGC 3 cut(s) 672, 810, 996
HinP1I GCGC 3 cut(s) 672, 810, 996
HindIII AAGCTT 2 cut(s) 216, 752
HinfI GANTC 2 cut(s) 566, 789
HpaII CCGG 1 cut(s) 349
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 5 cut(s) 359, 457, 504, 514, 720
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 2 cut(s) 173, 251
HpyAV CCTTC 4 cut(s) 30, 797, 902, 1123
HpyCH4IV ACGT 2 cut(s) 426, 981
HpyCH4V TGCA 7 cut(s) 225, 410, 905, 1034, 1063, 1153, 1182
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 546, 740, 944
HpyF3I CTNAG 3 cut(s) 124, 356, 968
HpySE526I ACGT 2 cut(s) 426, 981
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 7 cut(s) 58, 707, 777, 851, 935, 1182, 1227
HspAI GCGC 3 cut(s) 672, 810, 996
Kpn2I TCCGGA 1 cut(s) 348
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 3 cut(s) 413, 454, 763
Lsp1109I GCAGC 2 cut(s) 383, 394
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 944
MaeII ACGT 2 cut(s) 426, 981
MaeIII GTNAC 3 cut(s) 67, 148, 989
MbiI CCGCTC 2 cut(s) 253, 277
MboII GAAGA 9 cut(s) 491, 792, 827, 973, 1040, 1167, 1180, 1206, 1212
MflI RGATCY 6 cut(s) 61, 178, 359, 529, 652, 963
MhlI GDGCHC 3 cut(s) 227, 613, 768
MlsI TGGCCA 1 cut(s) 1079
MluCI AATT 8 cut(s) 39, 320, 587, 595, 621, 920, 1148, 1171
MluNI TGGCCA 1 cut(s) 1079
MlyI GAGTC 1 cut(s) 575
Mox20I TGGCCA 1 cut(s) 1079
Mph1103I ATGCAT 1 cut(s) 1184
MroI TCCGGA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 1079
MseI TTAA 2 cut(s) 297, 1116
MslI CAYNNNNRTG 1 cut(s) 1222
Msp20I TGGCCA 1 cut(s) 1079
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 1188
Mva1269I GAATGC 1 cut(s) 1182
MvaI CCWGG 1 cut(s) 1188
MvnI CGCG 1 cut(s) 996
MwoI GCNNNNNNNGC 4 cut(s) 413, 546, 740, 944
NcoI CCATGG 1 cut(s) 773
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 7 cut(s) 58, 707, 777, 851, 935, 1182, 1227
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 3 cut(s) 67, 148, 989
NsiI ATGCAT 1 cut(s) 1184
NspI RCATGY 2 cut(s) 707, 935
PaeI GCATGC 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 606
PagI TCATGA 2 cut(s) 54, 1223
PciI ACATGT 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 983
PctI GAATGC 1 cut(s) 1182
PfeI GAWTC 1 cut(s) 789
PflMI CCANNNNNTGG 1 cut(s) 1164
PkrI GCNGC 6 cut(s) 206, 398, 409, 745, 809, 937
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 1 cut(s) 574
PmaCI CACGTG 1 cut(s) 982
PmlI CACGTG 1 cut(s) 982
PpsI GAGTC 1 cut(s) 574
Ppu21I YACGTR 2 cut(s) 427, 982
PscI ACATGT 1 cut(s) 703
Psp124BI GAGCTC 2 cut(s) 613, 768
Psp6I CCWGG 1 cut(s) 1186
PspCI CACGTG 1 cut(s) 982
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 1 cut(s) 1186
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 1 cut(s) 387
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 6 cut(s) 61, 178, 359, 529, 652, 963
PvuI CGATCG 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 1222
SacI GAGCTC 2 cut(s) 613, 768
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 2 cut(s) 297, 1116
SatI GCNGC 6 cut(s) 205, 397, 408, 744, 808, 936
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 1188
SduI GDGCHC 3 cut(s) 227, 613, 768
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 2 cut(s) 408, 1021
Sfr274I CTCGAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 387
SlaI CTCGAG 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 1222
SmlI CTYRAG 2 cut(s) 606, 839
SmoI CTYRAG 2 cut(s) 606, 839
SphI GCATGC 1 cut(s) 935
Sse9I AATT 8 cut(s) 39, 320, 587, 595, 621, 920, 1148, 1171
SsiI CCGC 8 cut(s) 202, 205, 253, 275, 743, 807, 935, 994
SspMI CTAG 1 cut(s) 944
SstI GAGCTC 2 cut(s) 613, 768
StyD4I CCNGG 1 cut(s) 1186
StyI CCWWGG 4 cut(s) 675, 738, 773, 1122
TaiI ACGT 2 cut(s) 429, 984
TasI AATT 8 cut(s) 39, 320, 587, 595, 621, 920, 1148, 1171
TauI GCSGC 4 cut(s) 207, 746, 810, 938
TfiI GAWTC 1 cut(s) 789
Tru1I TTAA 2 cut(s) 297, 1116
Tru9I TTAA 2 cut(s) 297, 1116
TscAI CASTG 1 cut(s) 1005
TseFI GTSAC 3 cut(s) 67, 148, 989
TseI GCWGC 2 cut(s) 396, 407
Tsp45I GTSAC 3 cut(s) 67, 148, 989
TspDTI ATGAA 5 cut(s) 33, 864, 1167, 1206, 1212
TspRI CASTG 1 cut(s) 1005
Van91I CCANNNNNTGG 1 cut(s) 1164
VneI GTGCAC 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 387
XagI CCTNNNNNAGG 1 cut(s) 827
XapI RAATTY 3 cut(s) 587, 595, 1171
XceI RCATGY 2 cut(s) 707, 935
XcmI CCANNNNNNNNNTGG 2 cut(s) 397, 1087
XhoI CTCGAG 1 cut(s) 606
XspI CTAG 1 cut(s) 944
Zsp2I ATGCAT 1 cut(s) 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.