FvH4_3g26950

Protein of unknown function (DUF3148)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014319
Physical Location & Seq
Forward (+)
20057374 .. 20058251
878 bp
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UTR
Exon/CDS
Intron
FvH4_3g26950.t1

Sequence Viewer

Length: 390 bp
ATGGCATTTTCTTTCTCTTCCACTAGTACTGCAATTACATGTTCAAAGCTTTATGACAATTCCGGCCTGCAGTTCACCAGCTTAAGCTCTCATAAACGTAACCCAAGTCCTGTCAGTGTGAAGTGTGAATCGACGGAGTCAGAGTTGCCTGCAAATGCAAAGAAATCCATGCTTGAAGTTGGGTCTCCTGTTATTGTGGTCGAGTCTCCGAGAATGATAAAAACTGCAGCATCAGTTCCATGCCTCAGGGTTAACTCTGGCCTAGTCAAACCCGGTGATGTCGGAAGAATTGTGTCAAGAAAGCCTAAAGATGTGTGGGCAGTTCGTCTTTCCATTGGAACTTATCTCATTGATGGGAAGTACTTCAAGCCCTTGGAGATTGAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3148

Protein Analysis

130

Amino Acids

13.95

Weight (kDa)

9.4

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR42-like PF11347 60 - 122 2e-25 Protein CHLORORESPIRATORY REDUCTION 42-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20935 AT5G20935
fragaria_vesca FvH4_3g26950
malus_domestica MD03G1161500.v1.1
prunus_persica Prupe.6G149700_v2.0.a1 Prupe.6G149700_v2.0.a1
pyrus_communis pycom03g11380
rosa_chinensis RchiOBHm_Chr5g0049391
rosa_laevigata RLG00000034616
rosa_multiflora Rmu_sc0001307.1_g000005 Rmu_sc0014052.1_g000011
rosa_roxburghii Rroxscaffold_1G00032300
rosa_rugosa Rorug05G0248200
rosa_samantha Rh5AG324600 Rh5CG360400 Rh5DG348000
rosa_wichuraiana Rw5G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 28, 362
AflII CTTAAG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 3 cut(s) 45, 176, 367
AhlI ACTAGT 1 cut(s) 23
AluBI AGCT 3 cut(s) 49, 81, 87
AluI AGCT 3 cut(s) 49, 81, 87
Alw26I GTCTC 2 cut(s) 189, 210
AoxI GGCC 2 cut(s) 64, 259
ApeKI GCWGC 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 67, 287
AxyI CCTNAGG 1 cut(s) 245
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 189, 210
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 2 cut(s) 24, 263
BfmI CTRYAG 2 cut(s) 68, 225
BfrI CTTAAG 1 cut(s) 82
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmcAI AGTACT 2 cut(s) 28, 362
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bse21I CCTNAGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 239
BshFI GGCC 2 cut(s) 66, 261
BsiSI CCGG 2 cut(s) 63, 273
BsmAI GTCTC 2 cut(s) 189, 210
BsnI GGCC 2 cut(s) 66, 261
Bso31I GGTCTC 1 cut(s) 189
BspANI GGCC 2 cut(s) 66, 261
BspCNI CTCAG 1 cut(s) 258
BspMAI CTGCAG 2 cut(s) 72, 229
BspTI CTTAAG 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 68, 150
BstDEI CTNAG 1 cut(s) 245
BstMAI GTCTC 2 cut(s) 189, 210
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 2 cut(s) 68, 225
BstV1I GCAGC 1 cut(s) 239
Bsu36I CCTNAGG 1 cut(s) 245
BsuRI GGCC 2 cut(s) 66, 261
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 68, 150
Csp6I GTAC 2 cut(s) 27, 361
CviAII CATG 3 cut(s) 39, 169, 240
CviJI RGCY 8 cut(s) 49, 66, 81, 87, 261, 304, 370, 385
CviKI_1 RGCY 8 cut(s) 49, 66, 81, 87, 261, 304, 370, 385
CviQI GTAC 2 cut(s) 27, 361
DdeI CTNAG 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 189
Eco81I CCTNAGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 3 cut(s) 42, 172, 243
FaiI YATR 5 cut(s) 40, 54, 93, 170, 241
FatI CATG 3 cut(s) 38, 168, 239
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 2 cut(s) 24, 263
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 2 cut(s) 66, 261
HapII CCGG 2 cut(s) 63, 273
Hin1II CATG 3 cut(s) 42, 172, 243
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 3 cut(s) 128, 137, 203
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 2 cut(s) 63, 273
HphI GGTGA 2 cut(s) 67, 287
Hpy166II GTNNAC 2 cut(s) 75, 253
Hpy188I TCNGA 3 cut(s) 142, 210, 284
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 2 cut(s) 75, 253
Hpy99I CGWCG 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 32, 70, 152, 158, 227
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 42, 172, 243
KspAI GTTAAC 1 cut(s) 253
LpnPI CCDG 9 cut(s) 76, 80, 91, 123, 162, 201, 232, 243, 286
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 239
MaeI CTAG 2 cut(s) 24, 263
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 98
MboII GAAGA 2 cut(s) 9, 297
MluCI AATT 3 cut(s) 33, 58, 288
MlyI GAGTC 2 cut(s) 146, 212
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 2 cut(s) 83, 252
MspCI CTTAAG 1 cut(s) 82
MspI CCGG 2 cut(s) 63, 273
MspR9I CCNGG 1 cut(s) 273
NciI CCSGG 1 cut(s) 273
NlaIII CATG 3 cut(s) 42, 172, 243
NspI RCATGY 1 cut(s) 42
PciI ACATGT 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 2 cut(s) 145, 211
PpsI GAGTC 2 cut(s) 145, 211
PscI ACATGT 1 cut(s) 38
PstI CTGCAG 2 cut(s) 72, 229
PsyI GACNNNGTC 1 cut(s) 136
RsaI GTAC 2 cut(s) 28, 362
RsaNI GTAC 2 cut(s) 27, 361
SaqAI TTAA 2 cut(s) 83, 252
SatI GCNGC 1 cut(s) 228
ScaI AGTACT 2 cut(s) 28, 362
SchI GAGTC 2 cut(s) 146, 212
ScrFI CCNGG 1 cut(s) 273
SetI ASST 4 cut(s) 51, 83, 89, 100
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 2 cut(s) 68, 225
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 3 cut(s) 33, 58, 288
SspMI CTAG 2 cut(s) 24, 263
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 372
TaiI ACGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 131, 201
TasI AATT 3 cut(s) 33, 58, 288
TatI WGTACW 2 cut(s) 26, 360
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 83, 252
Tru9I TTAA 2 cut(s) 83, 252
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 227
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 136
Vha464I CTTAAG 1 cut(s) 82
XceI RCATGY 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 24, 263
ZrmI AGTACT 2 cut(s) 28, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.