Rh5CG360400

Protein of unknown function (DUF3148)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014319
Physical Location & Seq
Forward (+)
42957191 .. 42957490
300 bp
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UTR
Exon/CDS
Intron
Rh5CG360400.1

Sequence Viewer

Length: 300 bp
ATGGCATTATCTCTCTCTTCCACTACTGCATTTACATGTTCACAGCTTTATGACAACAAGTCAGGACTGCAGTTCACCAGCTTAAGCTCTCACAAACGTAACCCAAATGCTGTCAATGTCAAGTGTGAATCGACGGAGTCTGAGTTGCCTGCAAATGCAAAGAAATCCAAGCTTGCAATTGGGTCTCCTGTTATTGTGGTCGAGGCTCCGAGAATGATAAAAACCGCAGCATCAGTTCCATGCCTCAGGGTTAACTCTGGCTTAGTCAAGCCTGGTGATGTTGGAAGGTACGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3148

Protein Analysis

99

Amino Acids

10.47

Weight (kDa)

9.56

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR42-like PF11347 60 - 96 4e-10 Protein CHLORORESPIRATORY REDUCTION 42-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20935 AT5G20935
fragaria_vesca FvH4_3g26950
malus_domestica MD03G1161500.v1.1
prunus_persica Prupe.6G149700_v2.0.a1 Prupe.6G149700_v2.0.a1
pyrus_communis pycom03g11380
rosa_chinensis RchiOBHm_Chr5g0049391
rosa_laevigata RLG00000034616
rosa_multiflora Rmu_sc0001307.1_g000005 Rmu_sc0014052.1_g000011
rosa_roxburghii Rroxscaffold_1G00032300
rosa_rugosa Rorug05G0248200
rosa_samantha Rh5AG324600 Rh5CG360400 Rh5DG348000
rosa_wichuraiana Rw5G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AfaI GTAC 1 cut(s) 290
AflII CTTAAG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 35
AhdI GACNNNNNGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 4 cut(s) 46, 81, 87, 172
AluI AGCT 4 cut(s) 46, 81, 87, 172
Alw26I GTCTC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 67, 287
AxyI CCTNAGG 1 cut(s) 245
BbvI GCAGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 82
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 273
BmeRI GACNNNNNGTC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bse21I CCTNAGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 132, 259
BseXI GCAGC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 189
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 133, 258
BspLI GGNNCC 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 72
BspTI CTTAAG 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 150, 174
BstDEI CTNAG 3 cut(s) 141, 245, 262
BstMAI GTCTC 1 cut(s) 189
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 239
Bsu36I CCTNAGG 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 150, 174
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 36, 240
CviJI RGCY 7 cut(s) 46, 81, 87, 172, 206, 261, 271
CviKI_1 RGCY 7 cut(s) 46, 81, 87, 172, 206, 261, 271
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 3 cut(s) 141, 245, 262
DriI GACNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 189
Eco81I CCTNAGG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 2 cut(s) 39, 243
FaiI YATR 3 cut(s) 37, 51, 241
FatI CATG 2 cut(s) 35, 239
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 39, 243
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 128, 137
HpaI GTTAAC 1 cut(s) 253
HphI GGTGA 2 cut(s) 67, 287
Hpy166II GTNNAC 3 cut(s) 41, 75, 253
Hpy188I TCNGA 2 cut(s) 142, 210
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 3 cut(s) 41, 75, 253
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 279
HpyCH4IV ACGT 2 cut(s) 97, 291
HpyCH4V TGCA 5 cut(s) 29, 70, 152, 158, 176
HpyF3I CTNAG 3 cut(s) 141, 245, 262
HpySE526I ACGT 2 cut(s) 97, 291
Hsp92II CATG 2 cut(s) 39, 243
KspAI GTTAAC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 8 cut(s) 48, 91, 162, 201, 232, 243, 258, 285
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 239
MaeII ACGT 2 cut(s) 97, 291
MaeIII GTNAC 1 cut(s) 98
MboII GAAGA 1 cut(s) 9
MfeI CAATTG 1 cut(s) 177
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 2 cut(s) 196, 254
MseI TTAA 3 cut(s) 83, 252, 298
MslI CAYNNNNRTG 1 cut(s) 34
MspCI CTTAAG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 273
NlaIII CATG 2 cut(s) 39, 243
NlaIV GGNNCC 1 cut(s) 207
NspI RCATGY 1 cut(s) 39
PciI ACATGT 1 cut(s) 35
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PscI ACATGT 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 136
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 34
SaqAI TTAA 3 cut(s) 83, 252, 298
SatI GCNGC 1 cut(s) 228
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 273
SetI ASST 7 cut(s) 48, 83, 89, 100, 174, 290, 294
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 271
TaiI ACGT 2 cut(s) 100, 294
TaqI TCGA 2 cut(s) 131, 201
TasI AATT 1 cut(s) 177
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 3 cut(s) 83, 252, 298
Tru9I TTAA 3 cut(s) 83, 252, 298
TseI GCWGC 1 cut(s) 227
TspGWI ACGGA 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 136
Vha464I CTTAAG 1 cut(s) 82
XceI RCATGY 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.