Prupe.6G149700_v2.0.a1

Protein of unknown function (DUF3148)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
12861760 .. 12863927
2168 bp
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UTR
Exon/CDS
Intron
Prupe.6G149700.1

Sequence Viewer

Length: 402 bp
ATGGCATTATCCTTGTCTTCCCCGACTGCAATTACATGCTCCAAGCTCCATGACAATTCAAGCCTTCAATTCAACACCTCAAACACCTACAAACGAAGTCCAAATGCAGTGAGCGTCAAATGTGCATCGACAGAGCCACCGGCAGCAGGGGCCGGATCGGCGGGGAGGAAATCCAAGCTTGAGATAGGCTCTCCTATCATCGTAGTTGAGGCTCCAAGAATGATAAAAACCGCGGCATCGGTTCCATGCCTCAGGGTCAACTCCGGCTTGGTCAAACCCGGTGATGTTGGAAGAATTGTGTCAAGAAAGCCTATGGATGTGTGGGCAGTACGGCTTTCAATTGGCACTTATCTCATTGATGGCAAATACTTCAAGCCCTTGGAGTTAGAGCTTGACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

134

Amino Acids

14.09

Weight (kDa)

9.58

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20935 AT5G20935
fragaria_vesca FvH4_3g26950
malus_domestica MD03G1161500.v1.1
prunus_persica Prupe.6G149700_v2.0.a1 Prupe.6G149700_v2.0.a1
pyrus_communis pycom03g11380
rosa_chinensis RchiOBHm_Chr5g0049391
rosa_laevigata RLG00000034616
rosa_multiflora Rmu_sc0001307.1_g000005 Rmu_sc0014052.1_g000011
rosa_roxburghii Rroxscaffold_1G00032300
rosa_rugosa Rorug05G0248200
rosa_samantha Rh5AG324600 Rh5CG360400 Rh5DG348000
rosa_wichuraiana Rw5G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 233
AciI CCGC 3 cut(s) 161, 231, 233
AclWI GGATC 1 cut(s) 163
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 5 cut(s) 60, 68, 73, 339, 373
AluBI AGCT 3 cut(s) 46, 178, 391
AluI AGCT 3 cut(s) 46, 178, 391
AlwI GGATC 1 cut(s) 163
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 353
BceAI ACGGC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 279
BglI GCCNNNNNGGC 1 cut(s) 158
BisI GCNGC 2 cut(s) 144, 234
BlsI GCNGC 2 cut(s) 145, 235
Bme1390I CCNGG 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 151, 213, 243
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 134, 245
BpiI GAAGAC 1 cut(s) 9
BplI GAGNNNNNCTC 3 cut(s) 173, 205, 380
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 231, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 139
Bse21I CCTNAGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 231, 378
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 152
BsiSI CCGG 4 cut(s) 140, 153, 264, 279
BslI CCNNNNNNNGG 1 cut(s) 146
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 3 cut(s) 161, 231, 233
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 264
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 3 cut(s) 151, 213, 243
BspPI GGATC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 231, 378
BssMI GATC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 378
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 2 cut(s) 149, 158
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 251
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 150
Cfr42I CCGCGG 1 cut(s) 234
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 329
CviAII CATG 3 cut(s) 36, 50, 246
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 251
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 378
Eco81I CCTNAGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 3 cut(s) 39, 53, 249
FaiI YATR 5 cut(s) 37, 51, 247, 314, 400
FatI CATG 3 cut(s) 35, 49, 245
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 144, 234
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 144, 234
GluI GCNGC 2 cut(s) 144, 234
HaeIII GGCC 1 cut(s) 152
HapII CCGG 4 cut(s) 140, 153, 264, 279
HgaI GACGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 39, 53, 249
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 395
HpaII CCGG 4 cut(s) 140, 153, 264, 279
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 303
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 29, 107, 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 158
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 3 cut(s) 39, 53, 249
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 1 cut(s) 155
LmnI GCTCC 3 cut(s) 44, 51, 217
LpnPI CCDG 6 cut(s) 132, 153, 166, 238, 277, 292
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 2 cut(s) 134, 245
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 2 cut(s) 9, 303
MfeI CAATTG 1 cut(s) 339
MluCI AATT 5 cut(s) 30, 55, 68, 294, 339
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 4 cut(s) 88, 159, 202, 260
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 4 cut(s) 140, 153, 264, 279
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 149, 158
NciI CCSGG 1 cut(s) 279
NdeII GATC 1 cut(s) 155
NlaIII CATG 3 cut(s) 39, 53, 249
NlaIV GGNNCC 3 cut(s) 151, 213, 243
NspI RCATGY 1 cut(s) 39
PkrI GCNGC 2 cut(s) 145, 235
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
PspN4I GGNNCC 3 cut(s) 151, 213, 243
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SacII CCGCGG 1 cut(s) 234
SatI GCNGC 2 cut(s) 144, 234
Sau3AI GATC 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 279
SetI ASST 5 cut(s) 48, 80, 89, 180, 393
SfaNI GCATC 2 cut(s) 134, 245
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 5 cut(s) 30, 55, 68, 294, 339
SsiI CCGC 3 cut(s) 161, 231, 233
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 378
TaqI TCGA 1 cut(s) 128
TasI AATT 5 cut(s) 30, 55, 68, 294, 339
TauI GCSGC 1 cut(s) 236
TscAI CASTG 1 cut(s) 114
TseI GCWGC 1 cut(s) 143
TspRI CASTG 1 cut(s) 114
XceI RCATGY 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.