Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014319

Physical Location & Seq

Genomic Coordinates Forward (+)

27223653 .. 27224250

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0248200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTCCCTCTGTCTTCTTTCCTCCTTGTCCGCTACCCTCCCTATGTTGATTTCCATCACTCTCCACCCTTCCTTCACTCTTCCCAGTTCCTTTCTCTCTTGTTGTTCCTCCACTTATTCTCCATCTTCTTAATCTCTTCTCTGTCTCTTGTCCACCATCCATCCCTTTACATGTTTCTAAGTACCACCGATGTATCTTCGTCTTCAATCACTATCACTACTTTCGCTCTTCGGAGCGTTACCCTTAGCGGCTTTGTTCCGCAGTTTTCCCCCGAGCAGTTTACCCTTGTGGTTCCTGCTTATACTACCTTTCCGTGGTTTTATGTGTTCTTTTCGGTGCTTGTTTACTTCGGACTACCCAGTGATAGTCAGAGGGACGAGTTAGGTGCCTCTCGGTGTTGGATCCTGGTCTTATCGGCGTGTTCCTTTGGAAGGATTGGCTGGCTCTGCTACCTGCTTCTGCGGGGTTGTGTTCCTCTTGTGGCGGTGTCTACCGACATGGAGGCTTCTGGACTGGAGCTTGTTCTTGGAGTGGGCCTTCCCTTTCTTGGGCTTCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3148

Protein Analysis

187

Amino Acids

20.84

Weight (kDa)

6.0

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20935 AT5G20935
fragaria_vesca	FvH4_3g26950
malus_domestica	MD03G1161500.v1.1
prunus_persica	Prupe.6G149700_v2.0.a1 Prupe.6G149700_v2.0.a1
pyrus_communis	pycom03g11380
rosa_chinensis	RchiOBHm_Chr5g0049391
rosa_laevigata	RLG00000034616
rosa_multiflora	Rmu_sc0001307.1_g000005 Rmu_sc0014052.1_g000011
rosa_roxburghii	Rroxscaffold_1G00032300
rosa_rugosa	Rorug05G0248200
rosa_samantha	Rh5AG324600 Rh5CG360400 Rh5DG348000
rosa_wichuraiana	Rw5G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	5 cut(s)	31, 249, 260, 463, 485
AclWI	GGATC	2 cut(s)	397, 410
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	4 cut(s)	315, 432, 548, 549
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	1 cut(s)	520
AluI	AGCT	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	397, 410
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	4, 535
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BamHI	GGATCC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	6, 195
BccI	CCATC	4 cut(s)	63, 131, 165, 169
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	462
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	4, 535
BmiI	GGNNCC	4 cut(s)	6, 294, 388, 404
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	2 cut(s)	79, 354
BmuI	ACTGGG	2 cut(s)	79, 354
BpiI	GAAGAC	2 cut(s)	6, 195
BpmI	CTGGAG	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	315, 432, 548, 549
Bse1I	ACTGG	3 cut(s)	85, 360, 519
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	157, 161
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	4 cut(s)	315, 432, 548, 549
BseNI	ACTGG	3 cut(s)	85, 360, 519
BshFI	GGCC	1 cut(s)	537
BshNI	GGYRCC	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	4 cut(s)	315, 432, 548, 549
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	537
BsoBI	CYCGRG	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	5 cut(s)	31, 249, 260, 463, 485
BspANI	GGCC	1 cut(s)	537
BspLI	GGNNCC	4 cut(s)	6, 294, 388, 404
BspMI	ACCTGC	1 cut(s)	462
BspPI	GGATC	2 cut(s)	397, 410
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	386
BsrI	ACTGG	3 cut(s)	85, 360, 519
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	407
Bst6I	CTCTTC	3 cut(s)	85, 142, 234
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	179, 245
BstDSI	CCRYGG	1 cut(s)	314
BstENI	CCTNNNNNAGG	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	157, 161
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	405
BstV2I	GAAGAC	2 cut(s)	6, 195
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	537
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	157, 161
BtsIMutI	CAGTG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	4, 535
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	172, 499
CviJI	RGCY	7 cut(s)	252, 441, 445, 506, 520, 537, 553
CviKI_1	RGCY	7 cut(s)	252, 441, 445, 506, 520, 537, 553
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	179, 245
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
Eam1104I	CTCTTC	3 cut(s)	85, 142, 234
EarI	CTCTTC	3 cut(s)	85, 142, 234
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	175, 502
FaiI	YATR	5 cut(s)	45, 173, 303, 324, 500
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	171, 498
FauI	CCCGC	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	2 cut(s)	144, 148
Fsp4HI	GCNGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	1 cut(s)	537
Hin1II	CATG	2 cut(s)	175, 502
Hpy166II	GTNNAC	4 cut(s)	154, 282, 346, 492
Hpy188I	TCNGA	3 cut(s)	234, 353, 372
Hpy188III	TCNNGA	1 cut(s)	510
Hpy8I	GTNNAC	4 cut(s)	154, 282, 346, 492
HpyAV	CCTTC	4 cut(s)	79, 83, 426, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
HpyF3I	CTNAG	2 cut(s)	179, 245
Hsp92II	CATG	2 cut(s)	175, 502
Kzo9I	GATC	1 cut(s)	402
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	234, 517
LpnPI	CCDG	9 cut(s)	98, 309, 373, 392, 419, 427, 467, 495, 500
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	7 cut(s)	6, 72, 118, 129, 189, 195, 221
MflI	RGATCY	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	8 cut(s)	18, 32, 48, 119, 366, 400, 486, 496
MseI	TTAA	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	447
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	2 cut(s)	175, 502
NlaIV	GGNNCC	4 cut(s)	6, 294, 388, 404
NspI	RCATGY	1 cut(s)	175
PciI	ACATGT	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	251
PscI	ACATGT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	6, 294, 388, 404
PspPI	GGNCC	2 cut(s)	4, 535
PsuI	RGATCY	1 cut(s)	402
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	2 cut(s)	4, 535
ScrFI	CCNGG	1 cut(s)	407
SetI	ASST	4 cut(s)	311, 388, 456, 522
SinI	GGWCC	1 cut(s)	4
SsiI	CCGC	5 cut(s)	31, 249, 260, 463, 485
StyD4I	CCNGG	1 cut(s)	405
TauI	GCSGC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	1 cut(s)	367
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	430
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.