FvH4_3g27020

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006924
Physical Location & Seq
Forward (+)
20115889 .. 20119390
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27020.t1

Sequence Viewer

Length: 1434 bp
ATGCCGAAGATTCCCGAGTCACTGAAAGTCAGAGCTAAAAACATTTTTCTTGTTCCCCTCTTCTCTTTCTCTCTGGCTTTTGCATTTCTATGCCTCTTTCTGAGAGACCCATCCATGGCTTCCTTGGTGCTTCTCTATTTGTCTCAGTGGCGTCTTCCCAGAAGCTTTTTCTTCATACCCACCACCCTAGCCCTCGCAACCTCCCTTCTCATTCTCTTCTACATTTCCACAACCTCTAATCTCTTCCCTCACCACCCTCCTCTACCCAATCTCTCTTCCTTTGCTCCTCATCTCTACCCATTTCAAAGTCAACGCTCACTGCCTCCTAACTCCGCCCCAAATGGAAACTATGACAATAACAACGAGGTGTTCCATGACACACATATCTTTGTTCAAGACTATAAAGAAATGAAAAGGAGCTTTAAGATATATGTTTATCCTCACAGGAAAGATGATCCCTTTGCAAATGCACTTCTTCCTGTGGATTTCGAACCTGCGGGTAACTATGCCAGTGAAAGTTACTTCAAGAAGGTCCTGATGGAAAGCCATTTCATCACAAACGATCCAACCCAGGCACAACTTTTCTTTTTACCTTTCTCCATTGCAAGGTTGCGACACGACCCCAGAGTTGGTGTGGGAGGCATCCAGGATTTTATTAGAGATTACATGTTCAATATTAGTCACAAGTACGAATATTGGAACCGGACTGGTGGAGCAGATCATTTTTATGTTGCTTGTCATTCCATTGGACGCTCAGCTATGGAAAAAGCAACCCAAGTCAAATTTAATGCCATTCAACTTGTGTGCTCTTCAAGTTACTTCCTATCTGGGTACATTGCTCACAAGGATGCATGTCTCCCTCAAATTTGGCCCAGAAAACAAGACCCCCCTAACCTCCTGTCATCAAATAGAACAAAACTTGCATTCTTTGCCGGAGGAATTAACTCCCCAGTACGGGAAAGGCTTCTTCAAGTTTGGAGAAATGACTCCGAGATTTTTGTGAACTTTGGTCGGCTTAAGACATCGTATGCTGATGCGCTGCTTGGTAGCATGTTCTGTCTCCACGTTAAAGGATTTGAAGTAAACACAGCTCGTATTGCAGATTCATTGTATTATGGCTGTGTCCCAGTGATAATTGCCAACTACTATGACTTACCATTCGCAGACATACTAAACTGGAAGAGCTTCTCAGTCGTTGTTGCCACTCTAGATATCCCGTTGCTTAAGAATATCCTTAAAGGAATCAGGTCTGATGAATATATGAGGTTAAGAAACAATGTGTTTAAGGTGCGCAATCAGTTCCAGTGGCACCTTTCACCTATAGATTATGATGCTTTTCACATGGTTATGTATGAGTTGTGGCTCCGACGTAGTTTTTCAACAGCTTCCTTGAGCACTTTTGAGCATTCTAAATCAACAAATTTTTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Exostosin

Protein Analysis

478

Amino Acids

55.12

Weight (kDa)

9.21

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 138 - 413 6.4e-66 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1292
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 1308
AciI CCGC 2 cut(s) 333, 497
AclWI GGATC 2 cut(s) 449, 557
AcsI RAATTY 3 cut(s) 782, 864, 1420
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 3 cut(s) 689, 833, 954
AfiI CCNNNNNNNGG 5 cut(s) 115, 606, 629, 954, 955
AflII CTTAAG 2 cut(s) 1016, 1223
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 9 cut(s) 305, 395, 526, 673, 797, 813, 971, 1079, 1380
AjnI CCWGG 2 cut(s) 570, 645
AluBI AGCT 7 cut(s) 35, 165, 420, 758, 1091, 1185, 1385
AluI AGCT 7 cut(s) 35, 165, 420, 758, 1091, 1185, 1385
Alw21I GWGCWC 2 cut(s) 809, 1397
Alw26I GTCTC 4 cut(s) 99, 147, 860, 1064
AlwI GGATC 2 cut(s) 449, 557
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 1 cut(s) 869
ApeKI GCWGC 1 cut(s) 1039
ApoI RAATTY 3 cut(s) 782, 864, 1420
ArsI GACNNNNNNTTYG 2 cut(s) 1142, 1174
Asp700I GAANNNNTTC 2 cut(s) 963, 1184
AspLEI GCGC 2 cut(s) 1039, 1293
AspS9I GGNCC 2 cut(s) 532, 870
AsuHPI GGTGA 2 cut(s) 242, 1308
AsuII TTCGAA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 1308
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 809, 1397
BbvI GCAGC 1 cut(s) 1026
BccI CCATC 2 cut(s) 118, 532
BciT130I CCWGG 2 cut(s) 572, 647
BcoDI GTCTC 4 cut(s) 99, 147, 860, 1064
BfaI CTAG 2 cut(s) 188, 1208
BfmI CTRYAG 1 cut(s) 1320
BfrI CTTAAG 2 cut(s) 1016, 1223
BfuAI ACCTGC 1 cut(s) 502
BisI GCNGC 1 cut(s) 1040
BlpI GCTNAGC 1 cut(s) 754
BlsI GCNGC 1 cut(s) 1041
Bme1390I CCNGG 2 cut(s) 572, 647
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 532, 870
BmiI GGNNCC 3 cut(s) 701, 1310, 1364
BmrFI CCNGG 2 cut(s) 572, 647
BmrI ACTGGG 2 cut(s) 944, 1121
BmsI GCATC 4 cut(s) 651, 838, 1024, 1321
BmuI ACTGGG 2 cut(s) 944, 1121
BpiI GAAGAC 1 cut(s) 146
Bpu1102I GCTNAGC 1 cut(s) 754
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 1411
BsaHI GRCGYC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 114, 123, 570
BsaWI WCCGGW 1 cut(s) 702
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 606, 629, 954, 955
Bse1I ACTGG 6 cut(s) 510, 712, 950, 1127, 1181, 1303
Bse3DI GCAATG 2 cut(s) 600, 834
BseBI CCWGG 2 cut(s) 572, 647
BseDI CCNNGG 3 cut(s) 114, 123, 570
BseGI GGATG 3 cut(s) 110, 642, 853
BseLI CCNNNNNNNGG 5 cut(s) 115, 606, 629, 954, 955
BseMI GCAATG 2 cut(s) 600, 834
BseMII CTCAG 4 cut(s) 92, 158, 768, 1203
BseNI ACTGG 6 cut(s) 510, 712, 950, 1127, 1181, 1303
BseRI GAGGAG 2 cut(s) 249, 276
BseXI GCAGC 1 cut(s) 1026
BshFI GGCC 1 cut(s) 871
BshNI GGYRCC 1 cut(s) 1308
BsiHKAI GWGCWC 2 cut(s) 809, 1397
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 703, 933
BslFI GGGAC 1 cut(s) 1109
BslI CCNNNNNNNGG 5 cut(s) 115, 606, 629, 954, 955
BsmAI GTCTC 4 cut(s) 99, 147, 860, 1064
BsmFI GGGAC 1 cut(s) 1109
BsmI GAATGC 2 cut(s) 923, 1405
BsnI GGCC 1 cut(s) 871
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 809, 1397
Bsp143I GATC 3 cut(s) 454, 562, 718
Bsp1720I GCTNAGC 1 cut(s) 754
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 2 cut(s) 333, 497
BspANI GGCC 1 cut(s) 871
BspCNI CTCAG 4 cut(s) 93, 157, 767, 1202
BspLI GGNNCC 3 cut(s) 701, 1310, 1364
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 2 cut(s) 449, 557
BspQI GCTCTTC 2 cut(s) 814, 1175
BspT104I TTCGAA 1 cut(s) 489
BspT107I GGYRCC 1 cut(s) 1308
BspTI CTTAAG 2 cut(s) 1016, 1223
BspTNI GGTCTC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 600, 834
BsrI ACTGG 6 cut(s) 510, 712, 950, 1127, 1181, 1303
BssECI CCNNGG 3 cut(s) 114, 123, 570
BssMI GATC 3 cut(s) 454, 562, 718
BssNI GRCGYC 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 114, 123
Bst2UI CCWGG 2 cut(s) 572, 647
Bst6I CTCTTC 6 cut(s) 65, 221, 248, 280, 814, 1175
BstACI GRCGYC 1 cut(s) 151
BstAFI CTTAAG 2 cut(s) 1016, 1223
BstAPI GCANNNNNTGC 1 cut(s) 929
BstBI TTCGAA 1 cut(s) 489
BstDEI CTNAG 4 cut(s) 101, 144, 754, 1189
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 3 cut(s) 110, 642, 853
BstHHI GCGC 2 cut(s) 1039, 1293
BstKTI GATC 3 cut(s) 457, 565, 721
BstMAI GTCTC 4 cut(s) 99, 147, 860, 1064
BstMBI GATC 3 cut(s) 454, 562, 718
BstMWI GCNNNNNNNGC 2 cut(s) 929, 1097
BstNI CCWGG 2 cut(s) 572, 647
BstNSI RCATGY 3 cut(s) 670, 855, 1054
BstSCI CCNGG 2 cut(s) 570, 645
BstSFI CTRYAG 1 cut(s) 1320
BstV1I GCAGC 1 cut(s) 1026
BstV2I GAAGAC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 871
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 3 cut(s) 110, 642, 853
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 6 cut(s) 20, 152, 317, 517, 1134, 1310
BveI ACCTGC 1 cut(s) 502
CfoI GCGC 2 cut(s) 1039, 1293
Cfr13I GGNCC 2 cut(s) 532, 870
CseI GACGC 2 cut(s) 140, 759
Csp6I GTAC 3 cut(s) 688, 832, 953
CviAII CATG 6 cut(s) 115, 374, 667, 852, 1051, 1342
CviQI GTAC 3 cut(s) 688, 832, 953
DdeI CTNAG 4 cut(s) 101, 144, 754, 1189
DpnI GATC 3 cut(s) 456, 564, 720
DpnII GATC 3 cut(s) 454, 562, 718
Eam1104I CTCTTC 6 cut(s) 65, 221, 248, 280, 814, 1175
EarI CTCTTC 6 cut(s) 65, 221, 248, 280, 814, 1175
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 114, 123
Eco31I GGTCTC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 1213
Eco47I GGWCC 1 cut(s) 532
Eco88I CYCGRG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 2 cut(s) 570, 645
EcoRV GATATC 1 cut(s) 1213
EcoT14I CCWWGG 2 cut(s) 114, 123
EcoT22I ATGCAT 1 cut(s) 853
ErhI CCWWGG 2 cut(s) 114, 123
FaeI CATG 6 cut(s) 118, 377, 670, 855, 1054, 1345
FaqI GGGAC 1 cut(s) 1109
FatI CATG 6 cut(s) 114, 373, 666, 851, 1050, 1341
FauI CCCGC 1 cut(s) 490
Fnu4HI GCNGC 1 cut(s) 1040
FokI GGATG 3 cut(s) 97, 629, 860
Fsp4HI GCNGC 1 cut(s) 1040
FspBI CTAG 2 cut(s) 188, 1208
FspI TGCGCA 1 cut(s) 1292
GlaI GCGC 2 cut(s) 1038, 1292
GluI GCNGC 1 cut(s) 1040
HaeIII GGCC 1 cut(s) 871
HapII CCGG 2 cut(s) 703, 933
HgaI GACGC 2 cut(s) 140, 759
HhaI GCGC 2 cut(s) 1039, 1293
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 6 cut(s) 118, 377, 670, 855, 1054, 1345
Hin6I GCGC 2 cut(s) 1037, 1291
HinP1I GCGC 2 cut(s) 1037, 1291
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 5 cut(s) 10, 17, 986, 1103, 1242
HpaII CCGG 2 cut(s) 703, 933
HphI GGTGA 2 cut(s) 242, 1308
Hpy166II GTNNAC 3 cut(s) 311, 1003, 1084
Hpy188I TCNGA 5 cut(s) 32, 102, 991, 1252, 1367
Hpy188III TCNNGA 5 cut(s) 14, 395, 526, 535, 1208
Hpy8I GTNNAC 3 cut(s) 311, 1003, 1084
Hpy99I CGWCG 1 cut(s) 1371
HpyAV CCTTC 2 cut(s) 215, 523
HpyCH4IV ACGT 2 cut(s) 1065, 1369
HpyCH4V TGCA 7 cut(s) 83, 464, 470, 605, 851, 923, 1100
HpyF10VI GCNNNNNNNGC 2 cut(s) 929, 1097
HpyF3I CTNAG 4 cut(s) 101, 144, 754, 1189
HpySE526I ACGT 2 cut(s) 1065, 1369
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 6 cut(s) 118, 377, 670, 855, 1054, 1345
HspAI GCGC 2 cut(s) 1037, 1291
Kzo9I GATC 3 cut(s) 454, 562, 718
LguI GCTCTTC 2 cut(s) 814, 1175
LmnI GCTCC 4 cut(s) 289, 417, 713, 1368
Lsp1109I GCAGC 1 cut(s) 1026
LweI GCATC 4 cut(s) 651, 838, 1024, 1321
MaeI CTAG 2 cut(s) 188, 1208
MaeII ACGT 2 cut(s) 1065, 1369
MaeIII GTNAC 5 cut(s) 18, 500, 518, 680, 815
MalI GATC 3 cut(s) 456, 564, 720
MboI GATC 3 cut(s) 454, 562, 718
MhlI GDGCHC 2 cut(s) 809, 1397
MluCI AATT 5 cut(s) 782, 864, 939, 1134, 1420
MlyI GAGTC 2 cut(s) 26, 980
MmeI TCCRAC 2 cut(s) 590, 1390
Mph1103I ATGCAT 1 cut(s) 853
MroXI GAANNNNTTC 2 cut(s) 963, 1184
MseI TTAA 9 cut(s) 423, 786, 942, 1017, 1068, 1224, 1236, 1268, 1284
MslI CAYNNNNRTG 4 cut(s) 88, 726, 846, 1346
MspCI CTTAAG 2 cut(s) 1016, 1223
MspI CCGG 2 cut(s) 703, 933
MspR9I CCNGG 2 cut(s) 572, 647
Mva1269I GAATGC 2 cut(s) 923, 1405
MvaI CCWGG 2 cut(s) 572, 647
MwoI GCNNNNNNNGC 2 cut(s) 929, 1097
NcoI CCATGG 1 cut(s) 114
NdeII GATC 3 cut(s) 454, 562, 718
NlaIII CATG 6 cut(s) 118, 377, 670, 855, 1054, 1345
NlaIV GGNNCC 3 cut(s) 701, 1310, 1364
NmuCI GTSAC 2 cut(s) 18, 680
NsbI TGCGCA 1 cut(s) 1292
NsiI ATGCAT 1 cut(s) 853
NspI RCATGY 3 cut(s) 670, 855, 1054
NspV TTCGAA 1 cut(s) 489
PciI ACATGT 1 cut(s) 666
PciSI GCTCTTC 2 cut(s) 814, 1175
PctI GAATGC 2 cut(s) 923, 1405
PdmI GAANNNNTTC 2 cut(s) 963, 1184
PfeI GAWTC 3 cut(s) 10, 1103, 1242
PfoI TCCNGGA 1 cut(s) 645
PkrI GCNGC 1 cut(s) 1041
PleI GAGTC 2 cut(s) 25, 980
PpsI GAGTC 2 cut(s) 25, 980
PpuMI RGGWCCY 1 cut(s) 532
PscI ACATGT 1 cut(s) 666
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 570, 645
PspGI CCWGG 2 cut(s) 570, 645
PspN4I GGNNCC 3 cut(s) 701, 1310, 1364
PspPI GGNCC 2 cut(s) 532, 870
PspPPI RGGWCCY 1 cut(s) 532
RsaI GTAC 3 cut(s) 689, 833, 954
RsaNI GTAC 3 cut(s) 688, 832, 953
RseI CAYNNNNRTG 4 cut(s) 88, 726, 846, 1346
SapI GCTCTTC 2 cut(s) 814, 1175
SaqAI TTAA 9 cut(s) 423, 786, 942, 1017, 1068, 1224, 1236, 1268, 1284
SatI GCNGC 1 cut(s) 1040
Sau3AI GATC 3 cut(s) 454, 562, 718
Sau96I GGNCC 2 cut(s) 532, 870
SchI GAGTC 2 cut(s) 26, 980
ScrFI CCNGG 2 cut(s) 572, 647
SduI GDGCHC 2 cut(s) 809, 1397
SfaNI GCATC 4 cut(s) 651, 838, 1024, 1321
SfcI CTRYAG 1 cut(s) 1320
SfuI TTCGAA 1 cut(s) 489
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 4 cut(s) 88, 726, 846, 1346
SmlI CTYRAG 3 cut(s) 1016, 1223, 1390
SmoI CTYRAG 3 cut(s) 1016, 1223, 1390
Sse9I AATT 5 cut(s) 782, 864, 939, 1134, 1420
SsiI CCGC 2 cut(s) 333, 497
SspI AATATT 2 cut(s) 676, 695
SspMI CTAG 2 cut(s) 188, 1208
StyD4I CCNGG 2 cut(s) 570, 645
StyI CCWWGG 2 cut(s) 114, 123
TaiI ACGT 2 cut(s) 1068, 1372
TaqI TCGA 1 cut(s) 489
TasI AATT 5 cut(s) 782, 864, 939, 1134, 1420
TfiI GAWTC 3 cut(s) 10, 1103, 1242
Tru1I TTAA 9 cut(s) 423, 786, 942, 1017, 1068, 1224, 1236, 1268, 1284
Tru9I TTAA 9 cut(s) 423, 786, 942, 1017, 1068, 1224, 1236, 1268, 1284
TscAI CASTG 6 cut(s) 27, 152, 324, 517, 1134, 1310
TseFI GTSAC 2 cut(s) 18, 680
TseI GCWGC 1 cut(s) 1039
Tsp45I GTSAC 2 cut(s) 18, 680
TspDTI ATGAA 5 cut(s) 163, 425, 541, 1095, 1269
TspRI CASTG 6 cut(s) 27, 152, 324, 517, 1134, 1310
Vha464I CTTAAG 2 cut(s) 1016, 1223
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 3 cut(s) 782, 864, 1420
XbaI TCTAGA 1 cut(s) 1207
XceI RCATGY 3 cut(s) 670, 855, 1054
XcmI CCANNNNNNNNNTGG 2 cut(s) 121, 631
XmnI GAANNNNTTC 2 cut(s) 963, 1184
XspI CTAG 2 cut(s) 188, 1208
Zsp2I ATGCAT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.