Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011141.1

Orthogroup ID

OG0006924

Physical Location & Seq

Genomic Coordinates Forward (+)

12240 .. 14949

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011141.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atggcttcactggtgatttactatttgtctcagcagcgtcttcccagaagctttttgttgatacccaccagcttggccctcgtaacctctcttctcatcctcttttacatttccacaacctctaatctcttccctcatcatcctccccaacccaatctatcttcctttgctcatcatctcatcccatctcaaagtcaacgctcactaccacctaactcggccccaaatggaaacaacgaggtgttccatgatgcacatatctttcttcaagactataaagaaatgaaacggagctttaagatatatgtttatcctcacaggaaagatgatccctttgcaaatgcacttttgcctgtggatttcgaacctgcgggtaattatgccagtgaaagttacttcaagaaggtcctgatgaagagtcatttcatcacaaaagatccagccaaggcacatcttttctttttacctttctctattgcaaggttgcggcacgaccccagagttggtgtggcaggtatccaagagtttataagagattacatcttcaatattagtcacaagtacgaatattggaaccggactggtggagcagatcatttttatgttgcttgtcattccattggacgctcagctatggaaaaagcaacccaagtcaaatttaatgccattcaagttgtgtgctcttctagttacttcctatctgggtacattactcacaaggatgcatgtctgcctcaaatatggcccagaaaagaagagccccctaatcttctatcatcaaatagaacaaaacttgcattctttgccggaggaattaactccccagtacgggaaaggcttcttcaagtttggagaaatgaccctgagatttttgtgcacttcggtcggcttaaaacatcttatgctgatgcgatgcttggtagcatgttctgtctccacgttaaaggatttgaagtaaatacagctcgtattgcagattcattgtattatggctgtgtcccagtgataattgccaactactatgatttaccatttgcagacatactaaactggaagagcttctcagtcgttgttgccactctagatatcccgttgcttaagaagatccttaaaggaatcagctccaacgaatacatgaggttgaaaagcaatgtgttgaaggtgcgcaaacagttccaatggcaccttttacctactgattatgatgcttttaacatggttatgtacgagttgtggctccgtcggagtttttcaacagtttccttgagcacttttgaacattccaaatcaacaaatgattttacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Exostosin

Protein Analysis

435

Amino Acids

50.07

Weight (kDa)

9.35

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27020
malus_domestica	MD12G1006200.v1.1
prunus_persica	Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1
pyrus_communis	pycom12g00450
rosa_chinensis	RchiOBHm_Chr3g0496811
rosa_laevigata	RLG00000022501
rosa_multiflora	Rmu_sc0004684.1_g000007 Rmu_sc0011141.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388690
rosa_rugosa	Rorug03G0288200
rosa_samantha	Rh3AG331700 Rh3BG368200 Rh3CG364500 Rh3DG367700
rosa_wichuraiana	Rw3G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
Acc16I	TGCGCA	1 cut(s)	1166
Acc36I	ACCTGC	2 cut(s)	376, 503
AccB1I	GGYRCC	1 cut(s)	1182
AciI	CCGC	2 cut(s)	371, 487
AclWI	GGATC	3 cut(s)	323, 431, 1099
AcsI	RAATTY	1 cut(s)	656
AfaI	GTAC	4 cut(s)	563, 707, 828, 1226
AfiI	CCNNNNNNNGG	3 cut(s)	503, 828, 829
AflII	CTTAAG	1 cut(s)	1097
AluBI	AGCT	7 cut(s)	51, 72, 294, 632, 965, 1059, 1122
AluI	AGCT	7 cut(s)	51, 72, 294, 632, 965, 1059, 1122
Alw21I	GWGCWC	3 cut(s)	683, 879, 1271
Alw26I	GTCTC	2 cut(s)	33, 938
Alw44I	GTGCAC	1 cut(s)	875
AlwI	GGATC	3 cut(s)	323, 431, 1099
AoxI	GGCC	3 cut(s)	75, 219, 743
ApaLI	GTGCAC	1 cut(s)	875
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	656
Asp700I	GAANNNNTTC	2 cut(s)	837, 1058
AspLEI	GCGC	1 cut(s)	1167
AspS9I	GGNCC	4 cut(s)	76, 220, 406, 744
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	879
BanI	GGYRCC	1 cut(s)	1182
BanII	GRGCYC	1 cut(s)	762
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	3 cut(s)	683, 879, 1271
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BciVI	GTATCC	1 cut(s)	527
BcoDI	GTCTC	2 cut(s)	33, 938
BfaI	CTAG	2 cut(s)	687, 1082
BfrI	CTTAAG	1 cut(s)	1097
BfuAI	ACCTGC	2 cut(s)	376, 503
BfuI	GTATCC	1 cut(s)	527
BisI	GCNGC	2 cut(s)	35, 488
BlpI	GCTNAGC	1 cut(s)	628
BlsI	GCNGC	2 cut(s)	36, 489
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	4 cut(s)	76, 220, 406, 744
BmiI	GGNNCC	4 cut(s)	222, 575, 1184, 1238
BmrI	ACTGGG	2 cut(s)	818, 995
BmsI	GCATC	5 cut(s)	241, 712, 898, 903, 1195
BmuI	ACTGGG	2 cut(s)	818, 995
BpiI	GAAGAC	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	628
Bpu14I	TTCGAA	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	1285
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 828, 829
Bse1I	ACTGG	6 cut(s)	15, 384, 586, 824, 1001, 1055
Bse3DI	GCAATG	1 cut(s)	1156
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	4 cut(s)	96, 139, 180, 727
BseLI	CCNNNNNNNGG	3 cut(s)	503, 828, 829
BseMI	GCAATG	1 cut(s)	1156
BseMII	CTCAG	4 cut(s)	44, 642, 855, 1077
BseNI	ACTGG	6 cut(s)	15, 384, 586, 824, 1001, 1055
BseSI	GKGCMC	1 cut(s)	879
BseXI	GCAGC	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	886
BshFI	GGCC	3 cut(s)	77, 221, 745
BshNI	GGYRCC	1 cut(s)	1182
BsiEI	CGRYCG	1 cut(s)	886
BsiHKAI	GWGCWC	3 cut(s)	683, 879, 1271
BsiSI	CCGG	2 cut(s)	577, 807
BslFI	GGGAC	1 cut(s)	983
BslI	CCNNNNNNNGG	3 cut(s)	503, 828, 829
BsmAI	GTCTC	2 cut(s)	33, 938
BsmFI	GGGAC	1 cut(s)	983
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	3 cut(s)	77, 221, 745
Bsp119I	TTCGAA	1 cut(s)	363
Bsp1286I	GDGCHC	4 cut(s)	683, 762, 879, 1271
Bsp143I	GATC	4 cut(s)	328, 436, 592, 1104
Bsp1720I	GCTNAGC	1 cut(s)	628
BspACI	CCGC	2 cut(s)	371, 487
BspANI	GGCC	3 cut(s)	77, 221, 745
BspCNI	CTCAG	4 cut(s)	43, 641, 856, 1076
BspLI	GGNNCC	4 cut(s)	222, 575, 1184, 1238
BspMI	ACCTGC	2 cut(s)	376, 503
BspPI	GGATC	3 cut(s)	323, 431, 1099
BspQI	GCTCTTC	3 cut(s)	688, 750, 1049
BspT104I	TTCGAA	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	1182
BspTI	CTTAAG	1 cut(s)	1097
BsrDI	GCAATG	1 cut(s)	1156
BsrI	ACTGG	6 cut(s)	15, 384, 586, 824, 1001, 1055
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	4 cut(s)	328, 436, 592, 1104
BssT1I	CCWWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	1173, 1258
Bst6I	CTCTTC	6 cut(s)	96, 134, 410, 688, 750, 1049
BstAFI	CTTAAG	1 cut(s)	1097
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstBI	TTCGAA	1 cut(s)	363
BstDEI	CTNAG	4 cut(s)	30, 628, 864, 1063
BstF5I	GGATG	4 cut(s)	96, 139, 180, 727
BstHHI	GCGC	1 cut(s)	1167
BstKTI	GATC	4 cut(s)	331, 439, 595, 1107
BstMAI	GTCTC	2 cut(s)	33, 938
BstMBI	GATC	4 cut(s)	328, 436, 592, 1104
BstMCI	CGRYCG	1 cut(s)	886
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 971
BstNSI	RCATGY	2 cut(s)	729, 928
BstSLI	GKGCMC	1 cut(s)	879
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	436, 1104
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	2 cut(s)	436, 1104
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	3 cut(s)	77, 221, 745
BtgZI	GCGATG	1 cut(s)	926
BtsCI	GGATG	4 cut(s)	96, 139, 180, 727
BtsIMutI	CAGTG	3 cut(s)	8, 391, 1008
BveI	ACCTGC	2 cut(s)	376, 503
CfoI	GCGC	1 cut(s)	1167
Cfr13I	GGNCC	4 cut(s)	76, 220, 406, 744
CseI	GACGC	2 cut(s)	26, 633
Csp6I	GTAC	4 cut(s)	562, 706, 827, 1225
CviAII	CATG	6 cut(s)	248, 726, 925, 1135, 1216, 1305
CviQI	GTAC	4 cut(s)	562, 706, 827, 1225
DdeI	CTNAG	4 cut(s)	30, 628, 864, 1063
DpnI	GATC	4 cut(s)	330, 438, 594, 1106
DpnII	GATC	4 cut(s)	328, 436, 592, 1104
Eam1104I	CTCTTC	6 cut(s)	96, 134, 410, 688, 750, 1049
EarI	CTCTTC	6 cut(s)	96, 134, 410, 688, 750, 1049
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	762
Eco32I	GATATC	1 cut(s)	1087
Eco47I	GGWCC	1 cut(s)	406
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	1087
EcoT14I	CCWWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	6 cut(s)	251, 729, 928, 1138, 1219, 1308
FaqI	GGGAC	1 cut(s)	983
FatI	CATG	6 cut(s)	247, 725, 924, 1134, 1215, 1304
FauI	CCCGC	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	35, 488
FokI	GGATG	4 cut(s)	83, 126, 167, 734
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	2 cut(s)	35, 488
FspBI	CTAG	2 cut(s)	687, 1082
FspI	TGCGCA	1 cut(s)	1166
GlaI	GCGC	1 cut(s)	1166
GluI	GCNGC	2 cut(s)	35, 488
HaeIII	GGCC	3 cut(s)	77, 221, 745
HapII	CCGG	2 cut(s)	577, 807
HgaI	GACGC	2 cut(s)	26, 633
HhaI	GCGC	1 cut(s)	1167
Hin1II	CATG	6 cut(s)	251, 729, 928, 1138, 1219, 1308
Hin6I	GCGC	1 cut(s)	1165
HinP1I	GCGC	1 cut(s)	1165
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	3 cut(s)	418, 977, 1116
HpaII	CCGG	2 cut(s)	577, 807
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	197, 877
Hpy188I	TCNGA	1 cut(s)	1245
Hpy188III	TCNNGA	4 cut(s)	269, 400, 409, 1082
Hpy8I	GTNNAC	2 cut(s)	197, 877
Hpy99I	CGWCG	1 cut(s)	1245
HpyAV	CCTTC	2 cut(s)	397, 1153
HpyCH4III	ACNGT	2 cut(s)	1173, 1258
HpyCH4IV	ACGT	1 cut(s)	939
HpyCH4V	TGCA	9 cut(s)	254, 338, 344, 479, 725, 797, 877, 974, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 971
HpyF3I	CTNAG	4 cut(s)	30, 628, 864, 1063
HpySE526I	ACGT	1 cut(s)	939
Hsp92II	CATG	6 cut(s)	251, 729, 928, 1138, 1219, 1308
HspAI	GCGC	1 cut(s)	1165
Kzo9I	GATC	4 cut(s)	328, 436, 592, 1104
LguI	GCTCTTC	3 cut(s)	688, 750, 1049
LmnI	GCTCC	4 cut(s)	291, 587, 1127, 1242
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	5 cut(s)	241, 712, 898, 903, 1195
MaeI	CTAG	2 cut(s)	687, 1082
MaeII	ACGT	1 cut(s)	939
MaeIII	GTNAC	4 cut(s)	82, 392, 554, 689
MalI	GATC	4 cut(s)	330, 438, 594, 1106
MboI	GATC	4 cut(s)	328, 436, 592, 1104
MflI	RGATCY	2 cut(s)	436, 1104
MhlI	GDGCHC	4 cut(s)	683, 762, 879, 1271
MluCI	AATT	4 cut(s)	376, 656, 813, 1008
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	1149, 1223
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	2 cut(s)	837, 1058
MseI	TTAA	8 cut(s)	297, 660, 816, 891, 942, 1098, 1110, 1212
MslI	CAYNNNNRTG	3 cut(s)	600, 720, 1220
MspCI	CTTAAG	1 cut(s)	1097
MspI	CCGG	2 cut(s)	577, 807
Mva1269I	GAATGC	1 cut(s)	797
MwoI	GCNNNNNNNGC	2 cut(s)	803, 971
NdeII	GATC	4 cut(s)	328, 436, 592, 1104
NlaIII	CATG	6 cut(s)	251, 729, 928, 1138, 1219, 1308
NlaIV	GGNNCC	4 cut(s)	222, 575, 1184, 1238
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	554
NsbI	TGCGCA	1 cut(s)	1166
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	2 cut(s)	729, 928
NspV	TTCGAA	1 cut(s)	363
PciSI	GCTCTTC	3 cut(s)	688, 750, 1049
PctI	GAATGC	1 cut(s)	797
PdmI	GAANNNNTTC	2 cut(s)	837, 1058
PfeI	GAWTC	2 cut(s)	977, 1116
PkrI	GCNGC	2 cut(s)	36, 489
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
PpuMI	RGGWCCY	1 cut(s)	406
PsiI	TTATAA	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	406
PspN4I	GGNNCC	4 cut(s)	222, 575, 1184, 1238
PspPI	GGNCC	4 cut(s)	76, 220, 406, 744
PspPPI	RGGWCCY	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	436, 1104
RsaI	GTAC	4 cut(s)	563, 707, 828, 1226
RsaNI	GTAC	4 cut(s)	562, 706, 827, 1225
RseI	CAYNNNNRTG	3 cut(s)	600, 720, 1220
SapI	GCTCTTC	3 cut(s)	688, 750, 1049
SaqAI	TTAA	8 cut(s)	297, 660, 816, 891, 942, 1098, 1110, 1212
SatI	GCNGC	2 cut(s)	35, 488
Sau3AI	GATC	4 cut(s)	328, 436, 592, 1104
Sau96I	GGNCC	4 cut(s)	76, 220, 406, 744
SchI	GAGTC	1 cut(s)	427
SduI	GDGCHC	4 cut(s)	683, 762, 879, 1271
SfaNI	GCATC	5 cut(s)	241, 712, 898, 903, 1195
SfuI	TTCGAA	1 cut(s)	363
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	3 cut(s)	600, 720, 1220
SmlI	CTYRAG	2 cut(s)	1097, 1264
SmoI	CTYRAG	2 cut(s)	1097, 1264
Sse9I	AATT	4 cut(s)	376, 656, 813, 1008
SsiI	CCGC	2 cut(s)	371, 487
SspI	AATATT	2 cut(s)	550, 569
SspMI	CTAG	2 cut(s)	687, 1082
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	1173, 1258
TaiI	ACGT	1 cut(s)	942
TaqI	TCGA	1 cut(s)	363
TaqII	GACCGA	1 cut(s)	872
TasI	AATT	4 cut(s)	376, 656, 813, 1008
TauI	GCSGC	1 cut(s)	490
TfiI	GAWTC	2 cut(s)	977, 1116
Tru1I	TTAA	8 cut(s)	297, 660, 816, 891, 942, 1098, 1110, 1212
Tru9I	TTAA	8 cut(s)	297, 660, 816, 891, 942, 1098, 1110, 1212
TscAI	CASTG	3 cut(s)	15, 391, 1008
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	4 cut(s)	299, 415, 428, 969
TspGWI	ACGGA	2 cut(s)	304, 1229
TspRI	CASTG	3 cut(s)	15, 391, 1008
Vha464I	CTTAAG	1 cut(s)	1097
VneI	GTGCAC	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	1 cut(s)	656
XbaI	TCTAGA	1 cut(s)	1081
XceI	RCATGY	2 cut(s)	729, 928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	2 cut(s)	837, 1058
XspI	CTAG	2 cut(s)	687, 1082
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.