RchiOBHm_Chr3g0496811

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006924
Physical Location & Seq
Reverse (-)
48147107 .. 48150073
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45911

Sequence Viewer

Length: 1308 bp
ATGGCTTCACTGGTGATTTACTATTTGTCTCAGCAGCGTCTTCCCAGAAGCTTTTTGTTGATACCGACCAGCTTGGCCCTCGTAACCTCTCTTCTCATCCTCTTTTACATTTCCACAACCTCTAATCTCTTCCCTCATCATCCTCCCCAACCCAATCTATCTTCCTTTGCACATCATCTCATCCCATCTCAAAGTCAACGCTCACTACCACCTAAGTCGGCCCCAAATGGAAACAACGAGGTGTTCCATGATACGCATATCTTTCTTCAAGACTATAAAGAAATGAAAAGGAGCTTTAAGATATATGTTTATCCTCACAGGAAAGATGATCCCTTTGCAAATGCACTTTTGCCTGTGGATTTCGAACCTGCGGGTAATTATGCCAGTGAAAGTTACTTCAAGAAGGTCCTGATGAAGAGTCATTTCATCACAAAAGATCCAACCAAGGCACATCTTTTCTTTTTACCTTTCTCTATTGCAAGGTTGCGGCACGACCCCAGAGTTGGTGTGGCAGGTATCCAAGATTTTATTAGAGATTACATTTTCAATATTAGTCACAAGTACGAATATTGGAACCGGACTGGTGGAGCAGATCATTTTTATGTTGCTTGTCATTCCATTGGACGCTCAGCTATGGAAAAAGCAACCCAAGTCAAATTTAATGCTATTCAAGTTGTGTGCTCTTCTAGTTACTTCCTATCTGGGTACATTACTCACAAGGATGCATGTCTGCCTCAAATATGGCCCAGAAAAGAAGAGCCCCCTAATCTTCTATCATCAAATAGAACAAAACTTGCATTCTTTGCCGGAGGAATTAACTCCCCAGTACGGGAAAGGCTTCTTCAAGTTTGGAGAAATGACCCTGAGATTTTTGTGCACTTTGGTCGGCTTAAAACATCTTATGCTGATGCAATGCTTGGTAGCATGTTCTGTCTCCACGTTAAAGGATTTGAAGTAAATACAGCTCGTATTGCAGATTCATTGTATTATGGCTGTGTCCCAGTGATAATTGCCAACTACTATGATTTACCATTTGCAGACATACTAAACTGGAAGAGCTTCTCAGTCGTTGTTGCCACTCTAGATATCCCGTTGCTTAAGAAGATCCTTAAAGGAATCAGCTCCAACGAATACATGAGGTTGAAAAGCAATGTGTTGAAGGTGCGCAAACAGTTCCAATGGCACCTTTTACCTACTGATTATGATGCTTTTAACATGGTTATGTACGAGTTGTGGCTCCGTCGGAGTTTGTCAACAGTTTCCTTGAGCACTTTTGAACATTCCAAATCAACAAATGATTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Exostosin

Protein Analysis

435

Amino Acids

50.09

Weight (kDa)

9.39

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 96 - 371 1.7e-67 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1166
Acc36I ACCTGC 2 cut(s) 376, 503
AccB1I GGYRCC 1 cut(s) 1182
AciI CCGC 2 cut(s) 371, 487
AclWI GGATC 3 cut(s) 323, 431, 1099
AcsI RAATTY 1 cut(s) 656
AfaI GTAC 4 cut(s) 563, 707, 828, 1226
AfiI CCNNNNNNNGG 3 cut(s) 503, 828, 829
AflII CTTAAG 1 cut(s) 1097
AgsI TTSAA 9 cut(s) 269, 400, 547, 671, 845, 953, 1144, 1159, 1277
AluBI AGCT 7 cut(s) 51, 72, 294, 632, 965, 1059, 1122
AluI AGCT 7 cut(s) 51, 72, 294, 632, 965, 1059, 1122
Alw21I GWGCWC 3 cut(s) 683, 879, 1271
Alw26I GTCTC 2 cut(s) 33, 938
Alw44I GTGCAC 1 cut(s) 875
AlwI GGATC 3 cut(s) 323, 431, 1099
AoxI GGCC 3 cut(s) 75, 219, 743
ApaLI GTGCAC 1 cut(s) 875
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 656
Asp700I GAANNNNTTC 2 cut(s) 837, 1058
AspLEI GCGC 1 cut(s) 1167
AspS9I GGNCC 4 cut(s) 76, 220, 406, 744
AsuHPI GGTGA 1 cut(s) 25
AsuII TTCGAA 1 cut(s) 363
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 879
BanI GGYRCC 1 cut(s) 1182
BanII GRGCYC 1 cut(s) 762
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 3 cut(s) 683, 879, 1271
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BciVI GTATCC 1 cut(s) 527
BcoDI GTCTC 2 cut(s) 33, 938
BfaI CTAG 2 cut(s) 687, 1082
BfrI CTTAAG 1 cut(s) 1097
BfuAI ACCTGC 2 cut(s) 376, 503
BfuI GTATCC 1 cut(s) 527
BisI GCNGC 2 cut(s) 35, 488
BlpI GCTNAGC 1 cut(s) 628
BlsI GCNGC 2 cut(s) 36, 489
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 4 cut(s) 76, 220, 406, 744
BmiI GGNNCC 4 cut(s) 222, 575, 1184, 1238
BmrI ACTGGG 2 cut(s) 818, 995
BmsI GCATC 3 cut(s) 712, 898, 1195
BmuI ACTGGG 2 cut(s) 818, 995
BpiI GAAGAC 1 cut(s) 32
Bpu1102I GCTNAGC 1 cut(s) 628
Bpu14I TTCGAA 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 1285
BsaJI CCNNGG 1 cut(s) 444
BsaWI WCCGGW 1 cut(s) 576
Bsc4I CCNNNNNNNGG 3 cut(s) 503, 828, 829
Bse1I ACTGG 6 cut(s) 15, 384, 586, 824, 1001, 1055
Bse3DI GCAATG 2 cut(s) 918, 1156
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 4 cut(s) 96, 139, 180, 727
BseLI CCNNNNNNNGG 3 cut(s) 503, 828, 829
BseMI GCAATG 2 cut(s) 918, 1156
BseMII CTCAG 4 cut(s) 44, 642, 855, 1077
BseNI ACTGG 6 cut(s) 15, 384, 586, 824, 1001, 1055
BseSI GKGCMC 1 cut(s) 879
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 3 cut(s) 77, 221, 745
BshNI GGYRCC 1 cut(s) 1182
BsiHKAI GWGCWC 3 cut(s) 683, 879, 1271
BsiSI CCGG 2 cut(s) 577, 807
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 3 cut(s) 503, 828, 829
BsmAI GTCTC 2 cut(s) 33, 938
BsmFI GGGAC 1 cut(s) 983
BsmI GAATGC 1 cut(s) 797
BsnI GGCC 3 cut(s) 77, 221, 745
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 4 cut(s) 683, 762, 879, 1271
Bsp143I GATC 4 cut(s) 328, 436, 592, 1104
Bsp1720I GCTNAGC 1 cut(s) 628
BspACI CCGC 2 cut(s) 371, 487
BspANI GGCC 3 cut(s) 77, 221, 745
BspCNI CTCAG 4 cut(s) 43, 641, 856, 1076
BspLI GGNNCC 4 cut(s) 222, 575, 1184, 1238
BspMI ACCTGC 2 cut(s) 376, 503
BspPI GGATC 3 cut(s) 323, 431, 1099
BspQI GCTCTTC 3 cut(s) 688, 750, 1049
BspT104I TTCGAA 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 1182
BspTI CTTAAG 1 cut(s) 1097
BsrDI GCAATG 2 cut(s) 918, 1156
BsrI ACTGG 6 cut(s) 15, 384, 586, 824, 1001, 1055
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 4 cut(s) 328, 436, 592, 1104
BssT1I CCWWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 1173, 1258
Bst6I CTCTTC 6 cut(s) 96, 134, 410, 688, 750, 1049
BstAFI CTTAAG 1 cut(s) 1097
BstAPI GCANNNNNTGC 1 cut(s) 803
BstBI TTCGAA 1 cut(s) 363
BstDEI CTNAG 5 cut(s) 30, 213, 628, 864, 1063
BstF5I GGATG 4 cut(s) 96, 139, 180, 727
BstHHI GCGC 1 cut(s) 1167
BstKTI GATC 4 cut(s) 331, 439, 595, 1107
BstMAI GTCTC 2 cut(s) 33, 938
BstMBI GATC 4 cut(s) 328, 436, 592, 1104
BstMWI GCNNNNNNNGC 2 cut(s) 803, 971
BstNSI RCATGY 2 cut(s) 729, 928
BstSLI GKGCMC 1 cut(s) 879
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 436, 1104
BstYI RGATCY 2 cut(s) 436, 1104
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 3 cut(s) 77, 221, 745
BtsCI GGATG 4 cut(s) 96, 139, 180, 727
BtsIMutI CAGTG 3 cut(s) 8, 391, 1008
BveI ACCTGC 2 cut(s) 376, 503
CfoI GCGC 1 cut(s) 1167
Cfr13I GGNCC 4 cut(s) 76, 220, 406, 744
CseI GACGC 2 cut(s) 26, 633
Csp6I GTAC 4 cut(s) 562, 706, 827, 1225
CviAII CATG 6 cut(s) 248, 726, 925, 1135, 1216, 1305
CviQI GTAC 4 cut(s) 562, 706, 827, 1225
DdeI CTNAG 5 cut(s) 30, 213, 628, 864, 1063
DpnI GATC 4 cut(s) 330, 438, 594, 1106
DpnII GATC 4 cut(s) 328, 436, 592, 1104
Eam1104I CTCTTC 6 cut(s) 96, 134, 410, 688, 750, 1049
EarI CTCTTC 6 cut(s) 96, 134, 410, 688, 750, 1049
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 1 cut(s) 762
Eco32I GATATC 1 cut(s) 1087
Eco47I GGWCC 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 406
EcoRV GATATC 1 cut(s) 1087
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 6 cut(s) 251, 729, 928, 1138, 1219, 1308
FaqI GGGAC 1 cut(s) 983
FatI CATG 6 cut(s) 247, 725, 924, 1134, 1215, 1304
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 35, 488
FokI GGATG 4 cut(s) 83, 126, 167, 734
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 2 cut(s) 35, 488
FspBI CTAG 2 cut(s) 687, 1082
FspI TGCGCA 1 cut(s) 1166
GlaI GCGC 1 cut(s) 1166
GluI GCNGC 2 cut(s) 35, 488
HaeIII GGCC 3 cut(s) 77, 221, 745
HapII CCGG 2 cut(s) 577, 807
HgaI GACGC 2 cut(s) 26, 633
HhaI GCGC 1 cut(s) 1167
Hin1II CATG 6 cut(s) 251, 729, 928, 1138, 1219, 1308
Hin6I GCGC 1 cut(s) 1165
HinP1I GCGC 1 cut(s) 1165
HincII GTYRAC 2 cut(s) 197, 1254
HindII GTYRAC 2 cut(s) 197, 1254
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 3 cut(s) 418, 977, 1116
HpaII CCGG 2 cut(s) 577, 807
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 197, 877, 1254
Hpy188I TCNGA 1 cut(s) 1245
Hpy188III TCNNGA 4 cut(s) 269, 400, 409, 1082
Hpy8I GTNNAC 3 cut(s) 197, 877, 1254
Hpy99I CGWCG 1 cut(s) 1245
HpyAV CCTTC 2 cut(s) 397, 1153
HpyCH4III ACNGT 2 cut(s) 1173, 1258
HpyCH4IV ACGT 1 cut(s) 939
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 971
HpyF3I CTNAG 5 cut(s) 30, 213, 628, 864, 1063
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 6 cut(s) 251, 729, 928, 1138, 1219, 1308
HspAI GCGC 1 cut(s) 1165
Kzo9I GATC 4 cut(s) 328, 436, 592, 1104
LguI GCTCTTC 3 cut(s) 688, 750, 1049
LmnI GCTCC 4 cut(s) 291, 587, 1127, 1242
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 3 cut(s) 712, 898, 1195
MaeI CTAG 2 cut(s) 687, 1082
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 4 cut(s) 82, 392, 554, 689
MalI GATC 4 cut(s) 330, 438, 594, 1106
MboI GATC 4 cut(s) 328, 436, 592, 1104
MflI RGATCY 2 cut(s) 436, 1104
MhlI GDGCHC 4 cut(s) 683, 762, 879, 1271
MluCI AATT 4 cut(s) 376, 656, 813, 1008
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 3 cut(s) 464, 1149, 1223
Mph1103I ATGCAT 1 cut(s) 727
MroXI GAANNNNTTC 2 cut(s) 837, 1058
MseI TTAA 8 cut(s) 297, 660, 816, 891, 942, 1098, 1110, 1212
MslI CAYNNNNRTG 3 cut(s) 600, 720, 1220
MspCI CTTAAG 1 cut(s) 1097
MspI CCGG 2 cut(s) 577, 807
Mva1269I GAATGC 1 cut(s) 797
MwoI GCNNNNNNNGC 2 cut(s) 803, 971
NdeII GATC 4 cut(s) 328, 436, 592, 1104
NlaIII CATG 6 cut(s) 251, 729, 928, 1138, 1219, 1308
NlaIV GGNNCC 4 cut(s) 222, 575, 1184, 1238
NmuCI GTSAC 1 cut(s) 554
NsbI TGCGCA 1 cut(s) 1166
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 2 cut(s) 729, 928
NspV TTCGAA 1 cut(s) 363
PciSI GCTCTTC 3 cut(s) 688, 750, 1049
PctI GAATGC 1 cut(s) 797
PdmI GAANNNNTTC 2 cut(s) 837, 1058
PfeI GAWTC 2 cut(s) 977, 1116
PkrI GCNGC 2 cut(s) 36, 489
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
PpuMI RGGWCCY 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 406
PspN4I GGNNCC 4 cut(s) 222, 575, 1184, 1238
PspPI GGNCC 4 cut(s) 76, 220, 406, 744
PspPPI RGGWCCY 1 cut(s) 406
PsuI RGATCY 2 cut(s) 436, 1104
RsaI GTAC 4 cut(s) 563, 707, 828, 1226
RsaNI GTAC 4 cut(s) 562, 706, 827, 1225
RseI CAYNNNNRTG 3 cut(s) 600, 720, 1220
SapI GCTCTTC 3 cut(s) 688, 750, 1049
SaqAI TTAA 8 cut(s) 297, 660, 816, 891, 942, 1098, 1110, 1212
SatI GCNGC 2 cut(s) 35, 488
Sau3AI GATC 4 cut(s) 328, 436, 592, 1104
Sau96I GGNCC 4 cut(s) 76, 220, 406, 744
SchI GAGTC 1 cut(s) 427
SduI GDGCHC 4 cut(s) 683, 762, 879, 1271
SfaNI GCATC 3 cut(s) 712, 898, 1195
SfuI TTCGAA 1 cut(s) 363
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 3 cut(s) 600, 720, 1220
SmlI CTYRAG 2 cut(s) 1097, 1264
SmoI CTYRAG 2 cut(s) 1097, 1264
Sse9I AATT 4 cut(s) 376, 656, 813, 1008
SsiI CCGC 2 cut(s) 371, 487
SspI AATATT 2 cut(s) 550, 569
SspMI CTAG 2 cut(s) 687, 1082
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 1173, 1258
TaiI ACGT 1 cut(s) 942
TaqI TCGA 1 cut(s) 363
TasI AATT 4 cut(s) 376, 656, 813, 1008
TauI GCSGC 1 cut(s) 490
TfiI GAWTC 2 cut(s) 977, 1116
Tru1I TTAA 8 cut(s) 297, 660, 816, 891, 942, 1098, 1110, 1212
Tru9I TTAA 8 cut(s) 297, 660, 816, 891, 942, 1098, 1110, 1212
TscAI CASTG 3 cut(s) 15, 391, 1008
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 4 cut(s) 299, 415, 428, 969
TspGWI ACGGA 1 cut(s) 1229
TspRI CASTG 3 cut(s) 15, 391, 1008
Vha464I CTTAAG 1 cut(s) 1097
VneI GTGCAC 1 cut(s) 875
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 656
XbaI TCTAGA 1 cut(s) 1081
XceI RCATGY 2 cut(s) 729, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmnI GAANNNNTTC 2 cut(s) 837, 1058
XspI CTAG 2 cut(s) 687, 1082
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.