Rorug03G0288200

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000344
Physical Location & Seq
Forward (+)
29257219 .. 29306854
49636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0288200.1

Sequence Viewer

Length: 1287 bp
ATGGCAACGGCCTTCTCTTTTGCCCAAGCTGCTCTCTTCTCCAAAACCCCACTCTCTCTTCGCACCAATGCCCTCAGAACCTTAACCTTCTGCTTACCCTTCTCTTCTTTTTCTTCTTCTGCAGCTCTTGCCAAGAAATGGAGGCACCCAGTAACTTCAGCAGCGCTCGAGCTCGGCGGCGTCAAGATTGCTAGAGATGATGTGTTGAGGGATGACCCCACAAACAATGTTCCGGATACGATATTCGCAAAGCTTGGAATGCAACTGCATAGAAGAGACCAGCACCCACTTGGAATTCTCAAGAATGCTATCTACGAATACTTCGACACCAATTACTCGAACACGTTTGATAAGTTCGATGATCTTTGCCCACTTGTATCTGTTAAAGAGAATTTTGATGATGTATTAGTCCCTGCTGATCATGTAAGTCGAAGCTATAATGATACATACTATGTGGATTCTCAAACCGTTTTGAGGTGCCATACAAGTGCTCATCAGGCAGAGTTATTGAGAAGAGGACACACTCATTTCCTTGTAACTGGAGATGTGTACCGTAGGGATTCCATTGACTCTACACATTACCCTGTGTTCCATCAGATGGAAGGCGTGTGTGTTTTTTCTCCAGAAGATTGGGCAGCATCTGGGACAGATGCAACATCTTATGTAGCTGAGGACTTGAAGAAATGTCTTGAGGGTCTGGCACGCCACCTATTTGGTGCTGTGGAGATGCGCTGGGTTGATACGTACTTTCCATTTACCAATCCATCATTTGAACTTGAGATTTTCTTTCAGGAAAAGTGGTTGGAGGTTTTGGGTTGCGGAGTAACAGAACAAGAAATATTGAAGAGAAGTGGGAAAACAGACAATGTTGCTTGGGCTTTCGGACTTGGATTGGAGCGGCTGGCAATGGTTCTATTTGACATCCCTGATATTCGCCTTTTCTGGTCAACTGATGAGAGGTTTACCTCTCAGTTTTTGAAGGGGCAGCTGGGAGTCAAGTTCAAGCCATATTCAAAGTATCCTCCATGTTACAAAGATGTTAGTTTTTGGATCAGTGAATCTTTCACCGAAAACAATTTATGTGAAGTTGTTAGAGAGGTTGCTGGAGATCTTGCTGAGGAGGTGCAATTGATAGACAATTTCACAAACAAGAAAGGAATGACCAGTCACTGTTACAGGATTGCTTATAGGTCTATGGAACGATCACTTACAGATGAGGAAGTCAATAAATTGCAGGGTACTGTAAGAGAGTTGGTTGAGAGCAAGTTGAAGGTTATCTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Exostosin

Protein Analysis

428

Amino Acids

48.89

Weight (kDa)

5.7

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2d PF01409 115 - 325 4e-49 tRNA synthetases class II core domain (F)
FDX-ACB PF03147 338 - 428 1.3e-21 Ferredoxin-fold anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 144, 477
AccB7I CCANNNNNTGG 2 cut(s) 138, 598
AccBSI CCGCTC 1 cut(s) 898
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 3 cut(s) 177, 819, 898
AclWI GGATC 1 cut(s) 1058
AcsI RAATTY 2 cut(s) 294, 391
AcuI CTGAAG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 3 cut(s) 551, 746, 1240
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 3 cut(s) 138, 474, 598
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 7 cut(s) 679, 773, 844, 979, 1003, 1014, 1270
AluBI AGCT 7 cut(s) 29, 125, 172, 253, 435, 668, 988
AluI AGCT 7 cut(s) 29, 125, 172, 253, 435, 668, 988
Alw21I GWGCWC 2 cut(s) 174, 493
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 1 cut(s) 1058
AlwNI CAGNNNCTG 2 cut(s) 641, 1170
Ama87I CYCGRG 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 232
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 5 cut(s) 29, 122, 161, 635, 985
ApoI RAATTY 2 cut(s) 294, 391
AspLEI GCGC 2 cut(s) 166, 732
AsuHPI GGTGA 1 cut(s) 1057
AvaI CYCGRG 1 cut(s) 167
BanI GGYRCC 2 cut(s) 144, 477
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 174, 493
BbvCI CCTCAGC 2 cut(s) 669, 1116
BbvI GCAGC 5 cut(s) 16, 134, 173, 647, 997
BccI CCATC 3 cut(s) 592, 600, 772
BceAI ACGGC 1 cut(s) 24
BciVI GTATCC 2 cut(s) 229, 1029
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 167
BfuI GTATCC 2 cut(s) 229, 1029
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 7 cut(s) 30, 123, 162, 178, 636, 899, 986
BlsI GCNGC 7 cut(s) 31, 124, 163, 179, 637, 900, 987
BmeT110I CYCGRG 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 146, 479
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 3 cut(s) 640, 647, 717
BmuI ACTGGG 1 cut(s) 143
BpmI CTGGAG 3 cut(s) 561, 606, 1125
Bpu10I CCTNAGC 2 cut(s) 669, 1116
BpuEI CTTGAG 3 cut(s) 284, 710, 797
BsaAI YACGTR 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 474, 598
Bse1I ACTGG 3 cut(s) 149, 544, 1164
Bse3DI GCAATG 1 cut(s) 912
BseAI TCCGGA 1 cut(s) 232
BseGI GGATG 2 cut(s) 217, 921
BseLI CCNNNNNNNGG 3 cut(s) 138, 474, 598
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 4 cut(s) 88, 660, 983, 1107
BseNI ACTGG 3 cut(s) 149, 544, 1164
BseRI GAGGAG 1 cut(s) 1133
BseXI GCAGC 5 cut(s) 16, 134, 173, 647, 997
BseYI CCCAGC 2 cut(s) 732, 988
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 2 cut(s) 144, 477
BsiHKAI GWGCWC 2 cut(s) 174, 493
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 395, 658
BslI CCNNNNNNNGG 3 cut(s) 138, 474, 598
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 395, 658
BsmI GAATGC 2 cut(s) 264, 310
BsnI GGCC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 174, 493
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 5 cut(s) 361, 418, 1050, 1108, 1202
BspACI CCGC 3 cut(s) 177, 819, 898
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 4 cut(s) 87, 661, 982, 1108
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 146, 479
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 1058
BspT107I GGYRCC 2 cut(s) 144, 477
BspTNI GGTCTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 898
BsrDI GCAATG 1 cut(s) 912
BsrI ACTGG 3 cut(s) 149, 544, 1164
BssMI GATC 5 cut(s) 361, 418, 1050, 1108, 1202
BssNI GRCGYC 1 cut(s) 180
Bst4CI ACNGT 4 cut(s) 469, 554, 1172, 1243
Bst6I CTCTTC 6 cut(s) 41, 63, 109, 268, 508, 839
BstACI GRCGYC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 744
BstC8I GCNNGC 2 cut(s) 703, 903
BstDEI CTNAG 4 cut(s) 74, 669, 969, 1116
BstF5I GGATG 2 cut(s) 217, 921
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 166, 732
BstKTI GATC 5 cut(s) 364, 421, 1053, 1111, 1205
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 5 cut(s) 361, 418, 1050, 1108, 1202
BstMWI GCNNNNNNNGC 4 cut(s) 29, 128, 259, 497
BstSFI CTRYAG 1 cut(s) 120
BstSNI TACGTA 1 cut(s) 744
BstV1I GCAGC 5 cut(s) 16, 134, 173, 647, 997
BstX2I RGATCY 1 cut(s) 1108
BstXI CCANNNNNNTGG 2 cut(s) 630, 713
BstYI RGATCY 1 cut(s) 1108
BsuI GTATCC 2 cut(s) 229, 1029
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 2 cut(s) 217, 921
BtsIMutI CAGTG 2 cut(s) 1060, 1168
Cac8I GCNNGC 2 cut(s) 703, 903
CaiI CAGNNNCTG 2 cut(s) 641, 1170
CfoI GCGC 2 cut(s) 166, 732
CseI GACGC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 550, 745, 1239
CviAII CATG 2 cut(s) 422, 1026
CviQI GTAC 3 cut(s) 550, 745, 1239
DdeI CTNAG 4 cut(s) 74, 669, 969, 1116
DpnI GATC 5 cut(s) 363, 420, 1052, 1110, 1204
DpnII GATC 5 cut(s) 361, 418, 1050, 1108, 1202
Eam1104I CTCTTC 6 cut(s) 41, 63, 109, 268, 508, 839
EarI CTCTTC 6 cut(s) 41, 63, 109, 268, 508, 839
Ecl136II GAGCTC 1 cut(s) 172
Eco105I TACGTA 1 cut(s) 744
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 270
Eco47III AGCGCT 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 2 cut(s) 425, 1029
FalI AAGNNNNNCTT 1 cut(s) 1262
FaqI GGGAC 2 cut(s) 395, 658
FatI CATG 2 cut(s) 421, 1025
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 7 cut(s) 30, 123, 162, 178, 636, 899, 986
FokI GGATG 2 cut(s) 224, 908
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 7 cut(s) 30, 123, 162, 178, 636, 899, 986
FspBI CTAG 1 cut(s) 192
GlaI GCGC 2 cut(s) 165, 731
GluI GCNGC 7 cut(s) 30, 123, 162, 178, 636, 899, 986
GsaI CCCAGC 2 cut(s) 736, 992
GsuI CTGGAG 3 cut(s) 561, 606, 1125
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 169
HhaI GCGC 2 cut(s) 166, 732
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 425, 1029
Hin6I GCGC 2 cut(s) 164, 730
HinP1I GCGC 2 cut(s) 164, 730
HincII GTYRAC 1 cut(s) 948
HindII GTYRAC 1 cut(s) 948
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 5 cut(s) 458, 560, 569, 993, 1058
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 1057
Hpy166II GTNNAC 3 cut(s) 550, 948, 963
Hpy188I TCNGA 3 cut(s) 77, 597, 884
Hpy188III TCNNGA 7 cut(s) 184, 233, 301, 623, 689, 791, 1279
Hpy8I GTNNAC 3 cut(s) 550, 948, 963
HpyAV CCTTC 6 cut(s) 22, 97, 109, 596, 973, 1264
HpyCH4III ACNGT 4 cut(s) 469, 554, 1172, 1243
HpyCH4IV ACGT 2 cut(s) 344, 743
HpyCH4V TGCA 6 cut(s) 122, 262, 268, 653, 1126, 1234
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 128, 259, 497
HpyF3I CTNAG 4 cut(s) 74, 669, 969, 1116
HpySE526I ACGT 2 cut(s) 344, 743
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 425, 1029
HspAI GCGC 2 cut(s) 164, 730
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 5 cut(s) 361, 418, 1050, 1108, 1202
LmnI GCTCC 1 cut(s) 895
Lsp1109I GCAGC 5 cut(s) 16, 134, 173, 647, 997
LweI GCATC 3 cut(s) 640, 647, 717
MaeI CTAG 1 cut(s) 192
MaeII ACGT 2 cut(s) 344, 743
MaeIII GTNAC 6 cut(s) 151, 535, 823, 1028, 1166, 1172
MalI GATC 5 cut(s) 363, 420, 1052, 1110, 1204
MbiI CCGCTC 1 cut(s) 898
MboI GATC 5 cut(s) 361, 418, 1050, 1108, 1202
MfeI CAATTG 1 cut(s) 1127
MflI RGATCY 1 cut(s) 1108
MhlI GDGCHC 2 cut(s) 174, 493
MluCI AATT 7 cut(s) 294, 331, 391, 1075, 1127, 1138, 1229
MlyI GAGTC 2 cut(s) 563, 1002
MmeI TCCRAC 1 cut(s) 783
MroI TCCGGA 1 cut(s) 232
MseI TTAA 2 cut(s) 83, 384
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 988
MspI CCGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 1127
Mva1269I GAATGC 2 cut(s) 264, 310
MwoI GCNNNNNNNGC 4 cut(s) 29, 128, 259, 497
NdeII GATC 5 cut(s) 361, 418, 1050, 1108, 1202
NlaIII CATG 2 cut(s) 425, 1029
NlaIV GGNNCC 2 cut(s) 146, 479
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 1166
PaeR7I CTCGAG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 2 cut(s) 264, 310
PfeI GAWTC 3 cut(s) 458, 560, 1058
PflMI CCANNNNNTGG 2 cut(s) 138, 598
PkrI GCNGC 7 cut(s) 31, 124, 163, 179, 637, 900, 987
PleI GAGTC 2 cut(s) 563, 1001
PpsI GAGTC 2 cut(s) 563, 1001
Ppu21I YACGTR 1 cut(s) 744
Psp124BI GAGCTC 1 cut(s) 174
PspFI CCCAGC 2 cut(s) 732, 988
PspN4I GGNNCC 2 cut(s) 146, 479
PspXI VCTCGAGB 1 cut(s) 167
PstI CTGCAG 1 cut(s) 124
PstNI CAGNNNCTG 2 cut(s) 641, 1170
PsuI RGATCY 1 cut(s) 1108
PvuII CAGCTG 1 cut(s) 988
RsaI GTAC 3 cut(s) 551, 746, 1240
RsaNI GTAC 3 cut(s) 550, 745, 1239
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 83, 384
SatI GCNGC 7 cut(s) 30, 123, 162, 178, 636, 899, 986
Sau3AI GATC 5 cut(s) 361, 418, 1050, 1108, 1202
SchI GAGTC 2 cut(s) 563, 1002
SduI GDGCHC 2 cut(s) 174, 493
SfaNI GCATC 3 cut(s) 640, 647, 717
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 5 cut(s) 167, 299, 689, 776, 1279
SmoI CTYRAG 5 cut(s) 167, 299, 689, 776, 1279
SnaBI TACGTA 1 cut(s) 744
Sse9I AATT 7 cut(s) 294, 331, 391, 1075, 1127, 1138, 1229
SsiI CCGC 3 cut(s) 177, 819, 898
SspI AATATT 1 cut(s) 840
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 174
TaaI ACNGT 4 cut(s) 469, 554, 1172, 1243
TaiI ACGT 2 cut(s) 347, 746
TaqI TCGA 5 cut(s) 168, 324, 338, 357, 430
TasI AATT 7 cut(s) 294, 331, 391, 1075, 1127, 1138, 1229
TauI GCSGC 2 cut(s) 180, 901
TfiI GAWTC 3 cut(s) 458, 560, 1058
Tru1I TTAA 2 cut(s) 83, 384
Tru9I TTAA 2 cut(s) 83, 384
TscAI CASTG 2 cut(s) 1060, 1175
TseFI GTSAC 1 cut(s) 1166
TseI GCWGC 5 cut(s) 29, 122, 161, 635, 985
Tsp45I GTSAC 1 cut(s) 1166
TspRI CASTG 2 cut(s) 1060, 1175
Van91I CCANNNNNTGG 2 cut(s) 138, 598
XapI RAATTY 2 cut(s) 294, 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 167
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.