Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

38444109 .. 38448358

Gene Structure 4250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTGCAGGTTGCTGAATCTGAGTCCTCGGCCAGGGAGCGAGCCCCGGGGATGATGAGGAAGTTGCCGCAGTTTATTAGTAGGTTGTTTGCCATTTTGATGAACCTGAGTCCTCGGCAGAAACACCGTGCAGCATTGATTGCTGAGGGTTGTTCCAAGGTAATGATAAAAAATTTGGAGCCAGTGGTGGCAGTGGTCTTGAACTCGTTTCAAGATCCTCGTCCTCGTGTAAGGTGGGCAGCTATTAATGCATTTGGGCAGTTGTCTACTGATTTGGACCCAGACCTGCAAGTTCAATATCATCAACGGGTGCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAGAACCCTCGTGTGCAGGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

123

Amino Acids

13.86

Weight (kDa)

9.84

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	294, 352
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	3 cut(s)	202, 212, 296
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	242, 326
AluI	AGCT	2 cut(s)	242, 326
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	5 cut(s)	4, 131, 239, 326, 329
ApoI	RAATTY	1 cut(s)	172
AseI	ATTAAT	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	2 cut(s)	47, 48
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	2 cut(s)	225, 354
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	4 cut(s)	143, 251, 313, 316
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	2 cut(s)	47, 48
BfmI	CTRYAG	1 cut(s)	5
BfuAI	ACCTGC	2 cut(s)	294, 352
BisI	GCNGC	6 cut(s)	5, 68, 132, 240, 327, 330
BlsI	GCNGC	6 cut(s)	6, 69, 133, 241, 328, 331
Bme1390I	CCNGG	3 cut(s)	34, 47, 48
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	180, 279
BmrFI	CCNGG	3 cut(s)	34, 47, 48
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	2 cut(s)	47, 48
BsaJI	CCNNGG	8 cut(s)	27, 33, 45, 46, 47, 113, 156, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	8 cut(s)	27, 33, 45, 46, 47, 113, 156, 333
BseGI	GGATG	2 cut(s)	57, 343
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	3 cut(s)	12, 98, 135
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	143, 251, 313, 316
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	47, 317
BslI	CCNNNNNNNGG	1 cut(s)	33
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	3 cut(s)	13, 99, 136
BspLI	GGNNCC	2 cut(s)	180, 279
BspMAI	CTGCAG	1 cut(s)	9
BspMI	ACCTGC	2 cut(s)	294, 352
BspPI	GGATC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	8 cut(s)	27, 33, 45, 46, 47, 113, 156, 333
BssMI	GATC	1 cut(s)	214
BssSI	CACGAG	2 cut(s)	225, 354
BssT1I	CCWWGG	2 cut(s)	156, 333
Bst2BI	CACGAG	2 cut(s)	225, 354
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	128
BstAPI	GCANNNNNTGC	2 cut(s)	140, 326
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	21, 107, 144
BstDSI	CCRYGG	1 cut(s)	333
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	57, 343
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 248, 326
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	3 cut(s)	32, 45, 46
BstSFI	CTRYAG	1 cut(s)	5
BstV1I	GCAGC	4 cut(s)	143, 251, 313, 316
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	57, 343
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	189, 198
BveI	ACCTGC	2 cut(s)	294, 352
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	277
Cfr9I	CCCGGG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	5 cut(s)	32, 44, 181, 242, 326
CviKI_1	RGCY	5 cut(s)	32, 44, 181, 242, 326
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	3 cut(s)	21, 107, 144
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	156, 333
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	2 cut(s)	156, 333
EcoT22I	ATGCAT	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	156, 333
FaeI	CATG	1 cut(s)	337
FaiI	YATR	1 cut(s)	335
FatI	CATG	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	6 cut(s)	5, 68, 132, 240, 327, 330
FokI	GGATG	2 cut(s)	64, 350
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	6 cut(s)	5, 68, 132, 240, 327, 330
GluI	GCNGC	6 cut(s)	5, 68, 132, 240, 327, 330
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	2 cut(s)	47, 317
Hin1II	CATG	1 cut(s)	337
HinfI	GANTC	3 cut(s)	17, 23, 109
HpaII	CCGG	2 cut(s)	47, 317
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	22, 348
Hpy188III	TCNNGA	2 cut(s)	199, 212
Hpy8I	GTNNAC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	7, 131, 251, 289, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 248, 326
HpyF3I	CTNAG	3 cut(s)	21, 107, 144
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	37, 178
LpnPI	CCDG	9 cut(s)	19, 46, 60, 119, 195, 294, 299, 330, 347
Lsp1109I	GCAGC	4 cut(s)	143, 251, 313, 316
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	2 cut(s)	32, 118
MnlI	CCTC	7 cut(s)	37, 51, 123, 139, 228, 234, 363
Mph1103I	ATGCAT	1 cut(s)	253
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	2 cut(s)	47, 317
MspR9I	CCNGG	3 cut(s)	34, 47, 48
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	140, 248, 326
NciI	CCSGG	2 cut(s)	47, 48
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	180, 279
NmeAIII	GCCGAG	2 cut(s)	8, 94
NsiI	ATGCAT	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	6 cut(s)	6, 69, 133, 241, 328, 331
PleI	GAGTC	2 cut(s)	31, 117
PpsI	GAGTC	2 cut(s)	31, 117
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	180, 279
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	6 cut(s)	5, 68, 132, 240, 327, 330
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	32, 118
ScrFI	CCNGG	3 cut(s)	34, 47, 48
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	12, 86, 108, 162, 236, 244, 288, 328, 366
SfcI	CTRYAG	1 cut(s)	5
SinI	GGWCC	1 cut(s)	277
SmaI	CCCGGG	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	68
StyD4I	CCNGG	3 cut(s)	32, 45, 46
StyI	CCWWGG	2 cut(s)	156, 333
TaaI	ACNGT	1 cut(s)	128
TasI	AATT	1 cut(s)	172
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	189, 198
TseI	GCWGC	5 cut(s)	4, 131, 239, 326, 329
TspDTI	ATGAA	1 cut(s)	116
TspMI	CCCGGG	1 cut(s)	46
TspRI	CASTG	2 cut(s)	189, 198
VpaK11BI	GGWCC	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	172
XmaI	CCCGGG	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	266
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.