Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

56722065 .. 56729098

Gene Structure 7034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTGCAGATTGCTGAAGCCATAGATGTCTCTGAACAAGGGACGAGGCACTTGGCCATTGAGTTTCTGATTACTCTGGCCGAGGCCGGAGAGCGTGCACCATGGATAATGAGGAAGTGTCGGGAGTTTGTTGGTCTACTTTTTCCCATTTTAATGAGGATGGTTTCAAATGTCAAGGATGATCCCTCATGGCATACAGCTGAGACTGATGATGAGGATGCAGGTGCAAGTGGCGATTACTGTGTTGGGCAGGAGCGTTTGCATAGGCTTGCCATTGCCTTGGGTGGCAATAACATTGTTCCAATTGCGTTAGAACACTTTACTGCCCATTTTGCTGCACCCGAGTGGGCCAAGCATCATGTAGCATTGATTGCCCTTACTCAAATCGCTGAGGATTGCTCTGAGGTAATGATAAAAGATTTGGAGCAAGTGGTGGCAATGGTTTTGAACTCCTTTGAACATCCACATATTCGGGTAAGGTGGTCAGCTATTAATGCAGTTGGCCAGTTGTCTACTTATTTGGCCCCAGACCTGCAAGTTCAATATCATCAACAGGTGTTTTCTGCACTGAATGCCACTATATATGGTTTGCAGAACCGTTGTCTGCTGCTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

205

Amino Acids

22.88

Weight (kDa)

5.26

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Importin_rep_4	PF18808	13 - 101	7.7e-17	Importin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	212
Acc36I	ACCTGC	2 cut(s)	212, 540
AccI	GTMKAC	2 cut(s)	136, 512
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	3 cut(s)	54, 78, 502
AcuI	CTGAAG	1 cut(s)	36
AgsI	TTSAA	4 cut(s)	168, 448, 458, 542
AleI	CACNNNNGTG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	200, 488
AluI	AGCT	2 cut(s)	200, 488
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	2 cut(s)	34, 197
Alw44I	GTGCAC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	6 cut(s)	54, 78, 84, 348, 502, 522
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	335, 607
AseI	ATTAAT	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	348, 523
AvaI	CYCGRG	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	100
BalI	TGGCCA	2 cut(s)	56, 504
Bbv12I	GWGCWC	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	322, 594
BccI	CCATC	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	34, 197
BfuAI	ACCTGC	2 cut(s)	212, 540
BisI	GCNGC	2 cut(s)	336, 608
BlsI	GCNGC	2 cut(s)	337, 609
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	348, 523
BmiI	GGNNCC	1 cut(s)	525
BmsI	GCATC	2 cut(s)	208, 364
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
Bpu10I	CCTNAGC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	81, 101, 279
Bse1I	ACTGG	1 cut(s)	505
Bse3DI	GCAATG	2 cut(s)	273, 444
BseDI	CCNNGG	3 cut(s)	81, 101, 279
BseGI	GGATG	4 cut(s)	165, 184, 223, 460
BseMI	GCAATG	2 cut(s)	273, 444
BseMII	CTCAG	3 cut(s)	192, 381, 393
BseNI	ACTGG	1 cut(s)	505
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	322, 594
BsgI	GTGCAG	2 cut(s)	321, 549
BshFI	GGCC	6 cut(s)	56, 80, 86, 350, 504, 524
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	55
BsmAI	GTCTC	2 cut(s)	34, 197
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	6 cut(s)	56, 80, 86, 350, 504, 524
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	181
Bsp19I	CCATGG	1 cut(s)	101
BspANI	GGCC	6 cut(s)	56, 80, 86, 350, 504, 524
BspCNI	CTCAG	3 cut(s)	193, 382, 394
BspLI	GGNNCC	1 cut(s)	525
BspMI	ACCTGC	2 cut(s)	212, 540
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	273, 444
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	3 cut(s)	81, 101, 279
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	101, 279
Bst4CI	ACNGT	2 cut(s)	242, 599
BstAPI	GCANNNNNTGC	2 cut(s)	371, 572
BstC8I	GCNNGC	2 cut(s)	96, 270
BstDEI	CTNAG	4 cut(s)	201, 390, 402, 611
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	4 cut(s)	165, 184, 223, 460
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	34, 197
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 371, 494, 572
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	322, 594
BstXI	CCANNNNNNTGG	1 cut(s)	280
BsuRI	GGCC	6 cut(s)	56, 80, 86, 350, 504, 524
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	4 cut(s)	165, 184, 223, 460
BtsIMutI	CAGTG	1 cut(s)	566
BveI	ACCTGC	2 cut(s)	212, 540
Cac8I	GCNNGC	2 cut(s)	96, 270
Cfr13I	GGNCC	2 cut(s)	348, 523
CviAII	CATG	3 cut(s)	102, 189, 359
DdeI	CTNAG	4 cut(s)	201, 390, 402, 611
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	3 cut(s)	54, 78, 502
Eco130I	CCWWGG	2 cut(s)	101, 279
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	341
EcoT14I	CCWWGG	2 cut(s)	101, 279
ErhI	CCWWGG	2 cut(s)	101, 279
FaeI	CATG	3 cut(s)	105, 192, 362
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	101, 188, 358
FblI	GTMKAC	2 cut(s)	136, 512
Fnu4HI	GCNGC	2 cut(s)	336, 608
FokI	GGATG	4 cut(s)	172, 191, 230, 447
Fsp4HI	GCNGC	2 cut(s)	336, 608
GluI	GCNGC	2 cut(s)	336, 608
HaeIII	GGCC	6 cut(s)	56, 80, 86, 350, 504, 524
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	3 cut(s)	105, 192, 362
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	3 cut(s)	98, 137, 513
Hpy188I	TCNGA	3 cut(s)	34, 69, 403
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	3 cut(s)	98, 137, 513
HpyCH4III	ACNGT	2 cut(s)	242, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 371, 494, 572
HpyF3I	CTNAG	4 cut(s)	201, 390, 402, 611
Hsp92II	CATG	3 cut(s)	105, 192, 362
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	253, 424
LpnPI	CCDG	8 cut(s)	62, 100, 207, 236, 518, 539, 540, 545
Lsp1109I	GCAGC	2 cut(s)	322, 594
LweI	GCATC	2 cut(s)	208, 364
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	100
MlsI	TGGCCA	2 cut(s)	56, 504
MluCI	AATT	1 cut(s)	303
MluNI	TGGCCA	2 cut(s)	56, 504
MnlI	CCTC	8 cut(s)	39, 76, 105, 150, 196, 208, 385, 397
Mox20I	TGGCCA	2 cut(s)	56, 504
MscI	TGGCCA	2 cut(s)	56, 504
MseI	TTAA	3 cut(s)	152, 492, 616
MslI	CAYNNNNRTG	2 cut(s)	152, 343
Msp20I	TGGCCA	2 cut(s)	56, 504
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	577
MwoI	GCNNNNNNNGC	4 cut(s)	332, 371, 494, 572
NcoI	CCATGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	3 cut(s)	105, 192, 362
NlaIV	GGNNCC	1 cut(s)	525
NmeAIII	GCCGAG	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	343
PaqCI	CACCTGC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	577
PkrI	GCNGC	2 cut(s)	337, 609
PshBI	ATTAAT	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	2 cut(s)	348, 523
PvuII	CAGCTG	1 cut(s)	200
RseI	CAYNNNNRTG	2 cut(s)	152, 343
SaqAI	TTAA	3 cut(s)	152, 492, 616
SatI	GCNGC	2 cut(s)	336, 608
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	2 cut(s)	348, 523
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	7 cut(s)	202, 226, 408, 482, 490, 534, 558
SfaNI	GCATC	2 cut(s)	208, 364
SmiMI	CAYNNNNRTG	2 cut(s)	152, 343
Sse9I	AATT	1 cut(s)	303
StyI	CCWWGG	2 cut(s)	101, 279
TaaI	ACNGT	2 cut(s)	242, 599
TasI	AATT	1 cut(s)	303
Tru1I	TTAA	3 cut(s)	152, 492, 616
Tru9I	TTAA	3 cut(s)	152, 492, 616
TscAI	CASTG	1 cut(s)	573
TseI	GCWGC	2 cut(s)	335, 607
TspRI	CASTG	1 cut(s)	573
VneI	GTGCAC	1 cut(s)	96
VspI	ATTAAT	1 cut(s)	492
XmiI	GTMKAC	2 cut(s)	136, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.