Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002130.1

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

26525 .. 26887

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002130.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggcctccgccaacgagcagcgatcccaggccgagctcctcttcagtctctgcaagcagacctatcctgactcgctctcactcaaactcgctcacctcctccaattctcgccggcgcaggaggccagggccatgtccgccattctcctccgcaggcagctcacccgcgacgactcctatatttggcccaggctctccccgacgacgcagtccagcttcaaatcgattctcctgtcctgtattcaacgcgaggaggtcaaatcgatttccaagaagctctgcgacaccatctccgagctcgcctccgaaatcttggaggacaacggctggccggagctcctcccgttcatgttccggagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

120

Amino Acids

13.76

Weight (kDa)

7.71

Isoelectric Point (pI)

73.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	208
AccII	CGCG	2 cut(s)	168, 249
AccIII	TCCGGA	1 cut(s)	354
AciI	CCGC	4 cut(s)	9, 138, 151, 166
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	220, 245
AjnI	CCWGG	3 cut(s)	27, 125, 188
AluBI	AGCT	6 cut(s)	37, 160, 216, 277, 298, 337
AluI	AGCT	6 cut(s)	37, 160, 216, 277, 298, 337
Alw21I	GWGCWC	3 cut(s)	39, 300, 339
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	51
Aor13HI	TCCGGA	1 cut(s)	354
AoxI	GGCC	6 cut(s)	3, 30, 123, 129, 185, 329
ApeKI	GCWGC	2 cut(s)	19, 157
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	129, 186
AsuHPI	GGTGA	2 cut(s)	86, 154
BanII	GRGCYC	3 cut(s)	39, 300, 339
Bbv12I	GWGCWC	3 cut(s)	39, 300, 339
BbvI	GCAGC	2 cut(s)	31, 169
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	3 cut(s)	29, 127, 190
BcoDI	GTCTC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	20, 158
BlsI	GCNGC	2 cut(s)	21, 159
Bme1390I	CCNGG	3 cut(s)	29, 127, 190
BmgT120I	GGNCC	2 cut(s)	129, 186
BmrFI	CCNGG	3 cut(s)	29, 127, 190
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bsa29I	ATCGAT	2 cut(s)	224, 263
BsaJI	CCNNGG	3 cut(s)	27, 126, 188
BsaWI	WCCGGW	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	29, 127, 190
BseCI	ATCGAT	2 cut(s)	224, 263
BseDI	CCNNGG	3 cut(s)	27, 126, 188
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseRI	GAGGAG	5 cut(s)	29, 89, 137, 266, 329
BseXI	GCAGC	2 cut(s)	31, 169
Bsh1236I	CGCG	2 cut(s)	168, 249
BshFI	GGCC	6 cut(s)	5, 32, 125, 131, 187, 331
BshVI	ATCGAT	2 cut(s)	224, 263
BsiHKAI	GWGCWC	3 cut(s)	39, 300, 339
BsiSI	CCGG	3 cut(s)	113, 332, 355
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	6 cut(s)	5, 32, 125, 131, 187, 331
Bsp1286I	GDGCHC	3 cut(s)	39, 300, 339
Bsp13I	TCCGGA	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	4 cut(s)	9, 138, 151, 166
BspANI	GGCC	6 cut(s)	5, 32, 125, 131, 187, 331
BspDI	ATCGAT	2 cut(s)	224, 263
BspEI	TCCGGA	1 cut(s)	354
BspFNI	CGCG	2 cut(s)	168, 249
BspPI	GGATC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	27, 126, 188
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	3 cut(s)	29, 127, 190
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	5 cut(s)	56, 114, 155, 300, 329
BstFNI	CGCG	2 cut(s)	168, 249
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 137
BstNI	CCWGG	3 cut(s)	29, 127, 190
BstSCI	CCNGG	3 cut(s)	27, 125, 188
BstUI	CGCG	2 cut(s)	168, 249
BstV1I	GCAGC	2 cut(s)	31, 169
Bsu15I	ATCGAT	2 cut(s)	224, 263
BsuRI	GGCC	6 cut(s)	5, 32, 125, 131, 187, 331
BsuTUI	ATCGAT	2 cut(s)	224, 263
Cac8I	GCNNGC	5 cut(s)	56, 114, 155, 300, 329
CaiI	CAGNNNCTG	1 cut(s)	51
CfoI	GCGC	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	129, 186
ClaI	ATCGAT	2 cut(s)	224, 263
CseI	GACGC	1 cut(s)	214
CviAII	CATG	2 cut(s)	133, 349
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
DrdI	GACNNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	127
Ecl136II	GAGCTC	3 cut(s)	37, 298, 337
Eco24I	GRGCYC	3 cut(s)	39, 300, 339
Eco53kI	GAGCTC	3 cut(s)	37, 298, 337
Eco57I	CTGAAG	1 cut(s)	28
EcoICRI	GAGCTC	3 cut(s)	37, 298, 337
EcoRII	CCWGG	3 cut(s)	27, 125, 188
EcoT38I	GRGCYC	3 cut(s)	39, 300, 339
FaeI	CATG	2 cut(s)	136, 352
FaiI	YATR	3 cut(s)	134, 180, 350
FatI	CATG	2 cut(s)	132, 348
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	20, 158
FriOI	GRGCYC	3 cut(s)	39, 300, 339
Fsp4HI	GCNGC	2 cut(s)	20, 158
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	2 cut(s)	20, 158
HaeIII	GGCC	6 cut(s)	5, 32, 125, 131, 187, 331
HapII	CCGG	3 cut(s)	113, 332, 355
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	136, 352
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	3 cut(s)	71, 173, 226
HpaII	CCGG	3 cut(s)	113, 332, 355
HphI	GGTGA	2 cut(s)	86, 154
Hpy188I	TCNGA	2 cut(s)	295, 307
Hpy188III	TCNNGA	2 cut(s)	68, 355
Hpy99I	CGWCG	3 cut(s)	173, 205, 208
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 137
Hsp92II	CATG	2 cut(s)	136, 352
HspAI	GCGC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	354
KroI	GCCGGC	1 cut(s)	112
KroNI	GCCGGC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	3 cut(s)	42, 334, 342
Lsp1109I	GCAGC	2 cut(s)	31, 169
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	1 cut(s)	34
MhlI	GDGCHC	3 cut(s)	39, 300, 339
MluCI	AATT	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	65, 167
MreI	CGCCGGCG	1 cut(s)	112
MroI	TCCGGA	1 cut(s)	354
MroNI	GCCGGC	1 cut(s)	112
MspI	CCGG	3 cut(s)	113, 332, 355
MspR9I	CCNGG	3 cut(s)	29, 127, 190
MvaI	CCWGG	3 cut(s)	29, 127, 190
MvnI	CGCG	2 cut(s)	168, 249
MwoI	GCNNNNNNNGC	2 cut(s)	122, 137
NaeI	GCCGGC	1 cut(s)	114
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	136, 352
NmeAIII	GCCGAG	1 cut(s)	58
PdiI	GCCGGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	226
PflFI	GACNNNGTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	21, 159
PleI	GAGTC	2 cut(s)	65, 167
PpsI	GAGTC	2 cut(s)	65, 167
Psp124BI	GAGCTC	3 cut(s)	39, 300, 339
Psp6I	CCWGG	3 cut(s)	27, 125, 188
PspGI	CCWGG	3 cut(s)	27, 125, 188
PspPI	GGNCC	2 cut(s)	129, 186
PstNI	CAGNNNCTG	1 cut(s)	51
PsyI	GACNNNGTC	1 cut(s)	208
SacI	GAGCTC	3 cut(s)	39, 300, 339
SatI	GCNGC	2 cut(s)	20, 158
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	2 cut(s)	129, 186
SchI	GAGTC	2 cut(s)	65, 167
ScrFI	CCNGG	3 cut(s)	29, 127, 190
SduI	GDGCHC	3 cut(s)	39, 300, 339
SetI	ASST	9 cut(s)	39, 65, 99, 162, 218, 258, 279, 300, 339
SgrAI	CRCCGGYG	1 cut(s)	112
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	4 cut(s)	9, 138, 151, 166
SstI	GAGCTC	3 cut(s)	39, 300, 339
StyD4I	CCNGG	3 cut(s)	27, 125, 188
TaqI	TCGA	2 cut(s)	224, 263
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	19, 157
TspDTI	ATGAA	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.