Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

48915195 .. 48915788

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG365100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTGGCCGGAGCTCCTCCCGTTCATGTTCCGGAGATAGGGATAGGTTTCAGGACCTATTGCCGGCGATGATGAGGACATTCATGGAGTCTTTGAACAACGGGAACGAGGCCACGGCACAGGAGGCACTCGAGTTGTTCATTGAATATGCTGGGACCGAGCCAAGGTTCCTCAGGAGGCAGATTGTGGAGGTGGTTGGTTCTATGCTGCATGTTGCTGAAGCTGAGTCCTTGGAAGAAGGGACCAGAGTCACCAGACACTTGGCCATAGAGTTTGTAATCACTCTAGCCGAGGCCAGCGAGCGAGCCCCGGGGATGATGAGGAAGTTGCCGCAGTTTATTAGTAGGTTGTTTGCCATTTTGATGAAGATGGTTTTGGATATTGAGGATGATCCCTCATGGCATACCGCGGAGACTGAAGATAAGGATGCTGGTGAGAGTGGTAATTACAGTGTTGGGCAGGAGCGTTTGGATAGGCTTGCCATTTCCTTGGGTGGGAATACCATTGTTCCCGTCGCGTCTGAGCAGTTGCTTGCCTATTTGGCTGCCTCCGAGTGGCAGAAACACCATGCAGCATTGATTGCCCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

197

Amino Acids

21.84

Weight (kDa)

4.92

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Importin_rep_4	PF18808	84 - 171	4.3e-21	Importin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	410, 518
AccIII	TCCGGA	1 cut(s)	32
AciI	CCGC	3 cut(s)	332, 408, 410
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	2 cut(s)	7, 264
AcuI	CTGAAG	2 cut(s)	240, 438
AfiI	CCNNNNNNNGG	5 cut(s)	39, 64, 165, 495, 555
AgsI	TTSAA	2 cut(s)	97, 146
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	2 cut(s)	15, 224
AluI	AGCT	2 cut(s)	15, 224
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	386
Ama87I	CYCGRG	2 cut(s)	131, 310
Aor13HI	TCCGGA	1 cut(s)	32
AoxI	GGCC	4 cut(s)	7, 111, 264, 294
ApeKI	GCWGC	3 cut(s)	208, 545, 572
AspS9I	GGNCC	3 cut(s)	55, 156, 243
AsuC2I	CCSGG	2 cut(s)	311, 312
AsuHPI	GGTGA	2 cut(s)	244, 446
AvaI	CYCGRG	2 cut(s)	131, 310
AvaII	GGWCC	3 cut(s)	55, 156, 243
AxyI	CCTNAGG	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	17, 310
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	195, 532, 584
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	311, 312
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	542
BisI	GCNGC	4 cut(s)	209, 332, 546, 573
BlsI	GCNGC	4 cut(s)	210, 333, 547, 574
Bme1390I	CCNGG	2 cut(s)	311, 312
Bme18I	GGWCC	3 cut(s)	55, 156, 243
BmeT110I	CYCGRG	2 cut(s)	131, 310
BmgT120I	GGNCC	3 cut(s)	55, 156, 243
BmiI	GGNNCC	3 cut(s)	157, 170, 244
BmrFI	CCNGG	2 cut(s)	311, 312
BmsI	GCATC	1 cut(s)	418
BoxI	GACNNNNGTC	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	311, 312
BsaJI	CCNNGG	9 cut(s)	114, 164, 231, 291, 309, 310, 311, 408, 489
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 64, 165, 495, 555
Bse118I	RCCGGY	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	173
BseAI	TCCGGA	1 cut(s)	32
BseDI	CCNNGG	9 cut(s)	114, 164, 231, 291, 309, 310, 311, 408, 489
BseGI	GGATG	3 cut(s)	321, 394, 433
BseLI	CCNNNNNNNGG	5 cut(s)	39, 64, 165, 495, 555
BseMII	CTCAG	3 cut(s)	187, 216, 513
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	3 cut(s)	195, 532, 584
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	2 cut(s)	410, 518
BshFI	GGCC	4 cut(s)	9, 113, 266, 296
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	2 cut(s)	131, 310
BsiSI	CCGG	4 cut(s)	10, 33, 65, 311
BslFI	GGGAC	2 cut(s)	169, 256
BslI	CCNNNNNNNGG	5 cut(s)	39, 64, 165, 495, 555
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	2 cut(s)	169, 256
BsnI	GGCC	4 cut(s)	9, 113, 266, 296
BsoBI	CYCGRG	2 cut(s)	131, 310
Bsp1286I	GDGCHC	2 cut(s)	17, 310
Bsp13I	TCCGGA	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	3 cut(s)	332, 408, 410
BspANI	GGCC	4 cut(s)	9, 113, 266, 296
BspCNI	CTCAG	3 cut(s)	186, 217, 514
BspEI	TCCGGA	1 cut(s)	32
BspFNI	CGCG	2 cut(s)	410, 518
BspLI	GGNNCC	3 cut(s)	157, 170, 244
BspPI	GGATC	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	9 cut(s)	114, 164, 231, 291, 309, 310, 311, 408, 489
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	3 cut(s)	164, 231, 489
Bst4CI	ACNGT	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	7 cut(s)	7, 66, 298, 302, 306, 480, 534
BstDEI	CTNAG	3 cut(s)	173, 225, 522
BstDSI	CCRYGG	2 cut(s)	114, 408
BstF5I	GGATG	3 cut(s)	321, 394, 433
BstFNI	CGCG	2 cut(s)	410, 518
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 542, 581
BstNSI	RCATGY	1 cut(s)	215
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	309, 310
BstUI	CGCG	2 cut(s)	410, 518
BstV1I	GCAGC	3 cut(s)	195, 532, 584
BstXI	CCANNNNNNTGG	2 cut(s)	262, 490
Bsu36I	CCTNAGG	1 cut(s)	173
BsuRI	GGCC	4 cut(s)	9, 113, 266, 296
BtgI	CCRYGG	2 cut(s)	114, 408
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	3 cut(s)	321, 394, 433
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	7 cut(s)	7, 66, 298, 302, 306, 480, 534
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	55, 156, 243
Cfr42I	CCGCGG	1 cut(s)	411
Cfr9I	CCCGGG	1 cut(s)	310
CseI	GACGC	1 cut(s)	507
CviAII	CATG	5 cut(s)	27, 85, 212, 399, 569
DdeI	CTNAG	3 cut(s)	173, 225, 522
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	7, 264
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	164, 231, 489
Eco24I	GRGCYC	2 cut(s)	17, 310
Eco47I	GGWCC	3 cut(s)	55, 156, 243
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	240, 438
Eco81I	CCTNAGG	1 cut(s)	173
Eco88I	CYCGRG	2 cut(s)	131, 310
EcoICRI	GAGCTC	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT14I	CCWWGG	3 cut(s)	164, 231, 489
EcoT38I	GRGCYC	2 cut(s)	17, 310
ErhI	CCWWGG	3 cut(s)	164, 231, 489
FaeI	CATG	5 cut(s)	30, 88, 215, 402, 572
FaqI	GGGAC	2 cut(s)	169, 256
FatI	CATG	5 cut(s)	26, 84, 211, 398, 568
Fnu4HI	GCNGC	4 cut(s)	209, 332, 546, 573
FokI	GGATG	3 cut(s)	328, 401, 440
FriOI	GRGCYC	2 cut(s)	17, 310
Fsp4HI	GCNGC	4 cut(s)	209, 332, 546, 573
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	4 cut(s)	209, 332, 546, 573
GsaI	CCCAGC	1 cut(s)	156
HaeIII	GGCC	4 cut(s)	9, 113, 266, 296
HapII	CCGG	4 cut(s)	10, 33, 65, 311
HgaI	GACGC	1 cut(s)	507
Hin1II	CATG	5 cut(s)	30, 88, 215, 402, 572
HinfI	GANTC	3 cut(s)	89, 227, 249
HpaII	CCGG	4 cut(s)	10, 33, 65, 311
HphI	GGTGA	2 cut(s)	244, 446
Hpy188I	TCNGA	2 cut(s)	523, 553
Hpy188III	TCNNGA	3 cut(s)	33, 53, 175
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4V	TGCA	3 cut(s)	211, 572, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 542, 581
HpyF3I	CTNAG	3 cut(s)	173, 225, 522
Hsp92II	CATG	5 cut(s)	30, 88, 215, 402, 572
Kpn2I	TCCGGA	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	12, 20, 463
Lsp1109I	GCAGC	3 cut(s)	195, 532, 584
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	248, 379, 431
MhlI	GDGCHC	2 cut(s)	17, 310
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	1 cut(s)	445
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	3 cut(s)	98, 236, 258
Mox20I	TGGCCA	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	32
MroNI	GCCGGC	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	4 cut(s)	10, 33, 65, 311
MspR9I	CCNGG	2 cut(s)	311, 312
MvnI	CGCG	2 cut(s)	410, 518
MwoI	GCNNNNNNNGC	3 cut(s)	125, 542, 581
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	311, 312
NdeII	GATC	1 cut(s)	391
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	5 cut(s)	30, 88, 215, 402, 572
NlaIV	GGNNCC	3 cut(s)	157, 170, 244
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	66
PkrI	GCNGC	4 cut(s)	210, 333, 547, 574
PleI	GAGTC	3 cut(s)	97, 235, 257
PpsI	GAGTC	3 cut(s)	97, 235, 257
PpuMI	RGGWCCY	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	157, 170, 244
PspPI	GGNCC	3 cut(s)	55, 156, 243
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	17
SacII	CCGCGG	1 cut(s)	411
SatI	GCNGC	4 cut(s)	209, 332, 546, 573
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	3 cut(s)	55, 156, 243
SchI	GAGTC	3 cut(s)	98, 236, 258
ScrFI	CCNGG	2 cut(s)	311, 312
SduI	GDGCHC	2 cut(s)	17, 310
SetI	ASST	7 cut(s)	17, 50, 60, 170, 195, 226, 350
SfaNI	GCATC	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	131
Sfr303I	CCGCGG	1 cut(s)	411
SgrBI	CCGCGG	1 cut(s)	411
SinI	GGWCC	3 cut(s)	55, 156, 243
SlaI	CTCGAG	1 cut(s)	131
SmaI	CCCGGG	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	3 cut(s)	332, 408, 410
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	309, 310
StyI	CCWWGG	3 cut(s)	164, 231, 489
TaaI	ACNGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	132
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	445
TauI	GCSGC	1 cut(s)	334
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	208, 545, 572
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	4 cut(s)	15, 73, 130, 380
TspMI	CCCGGG	1 cut(s)	310
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	3 cut(s)	55, 156, 243
XceI	RCATGY	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	131
XmaI	CCCGGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.