Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013655.1

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

172 .. 741

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013655.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcggagtcgactgagcatcagcaactggcggccattctcggtccggagccggccgccactttccaaaccgtaatctcctacttaatctcctccccctcctctttgcaaaccctaatctccgacctcatctcctccgagaagcggtccgaggccgagctcgtcttcaacatctgcaagcaggccgatcacgagtcgctttctctcaaactcgctcagcttctccaggtctctcccgacgagaagacccgagccatgtgctccattctcctccggaagcaactactcacccgcgacctgtggcgaagactctctcgtaacaccaaatccaccctcaaacagactttattatcttgtattcaacgcgaggacaccccaacatcgatttcgaaggccatttgctacgccgtgtcggagctcgcctccgcagtgttgttcgccgaaggctggccggagctcttgccctttcagttccaatccacctcctatgatgcgccgccgaagcttcaggaatgctccttcttgattttcgatcagctcgcgtacttctttgccccgtttatagacgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

190

Amino Acids

21.34

Weight (kDa)

5.14

Isoelectric Point (pI)

68.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	3 cut(s)	294, 366, 542
AccIII	TCCGGA	2 cut(s)	46, 273
AciI	CCGC	7 cut(s)	5, 32, 57, 145, 292, 426, 497
AcoI	YGGCCR	3 cut(s)	33, 54, 449
AcuI	CTGAAG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	144, 447
AgsI	TTSAA	2 cut(s)	169, 362
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AluBI	AGCT	6 cut(s)	160, 220, 418, 457, 505, 538
AluI	AGCT	6 cut(s)	160, 220, 418, 457, 505, 538
Alw21I	GWGCWC	4 cut(s)	162, 263, 420, 459
Alw26I	GTCTC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	249
Aor13HI	TCCGGA	2 cut(s)	46, 273
AoxI	GGCC	6 cut(s)	33, 54, 153, 183, 393, 449
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	2 cut(s)	44, 147
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	2 cut(s)	44, 147
BanII	GRGCYC	3 cut(s)	162, 420, 459
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	3 cut(s)	157, 251, 313
Bbv12I	GWGCWC	4 cut(s)	162, 263, 420, 459
BceAI	ACGGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	235
BisI	GCNGC	3 cut(s)	33, 57, 497
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	3 cut(s)	34, 58, 498
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	44, 147
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	44, 147
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	28, 481
BpiI	GAAGAC	3 cut(s)	157, 251, 313
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	2 cut(s)	46, 273
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 447
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	33
BseAI	TCCGGA	2 cut(s)	46, 273
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	144, 447
BseMII	CTCAG	2 cut(s)	6, 230
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	4 cut(s)	82, 91, 124, 260
BseX3I	CGGCCG	1 cut(s)	54
Bsh1236I	CGCG	3 cut(s)	294, 366, 542
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	6 cut(s)	35, 56, 155, 185, 395, 451
BshVI	ATCGAT	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	4 cut(s)	162, 263, 420, 459
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	4 cut(s)	47, 53, 274, 452
BslI	CCNNNNNNNGG	2 cut(s)	144, 447
BsmAI	GTCTC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	6 cut(s)	35, 56, 155, 185, 395, 451
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	4 cut(s)	162, 263, 420, 459
Bsp13I	TCCGGA	2 cut(s)	46, 273
Bsp143I	GATC	2 cut(s)	187, 532
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	7 cut(s)	5, 32, 57, 145, 292, 426, 497
BspANI	GGCC	6 cut(s)	35, 56, 155, 185, 395, 451
BspCNI	CTCAG	2 cut(s)	7, 229
BspDI	ATCGAT	1 cut(s)	383
BspEI	TCCGGA	2 cut(s)	46, 273
BspFNI	CGCG	3 cut(s)	294, 366, 542
BspLI	GGNNCC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	187, 532
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	6 cut(s)	54, 179, 183, 420, 449, 540
BstDEI	CTNAG	2 cut(s)	15, 216
BstFNI	CGCG	3 cut(s)	294, 366, 542
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	2 cut(s)	190, 535
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	187, 532
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	502
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	3 cut(s)	294, 366, 542
BstV2I	GAAGAC	3 cut(s)	157, 251, 313
BstZI	CGGCCG	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	6 cut(s)	35, 56, 155, 185, 395, 451
BsuTUI	ATCGAT	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	6 cut(s)	54, 179, 183, 420, 449, 540
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	44, 147
ClaI	ATCGAT	1 cut(s)	383
CpoI	CGGWCCG	2 cut(s)	44, 147
Csp6I	GTAC	1 cut(s)	544
CspI	CGGWCCG	2 cut(s)	44, 147
CviAII	CATG	1 cut(s)	256
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	2 cut(s)	15, 216
DpnI	GATC	2 cut(s)	189, 534
DpnII	GATC	2 cut(s)	187, 532
EaeI	YGGCCR	3 cut(s)	33, 54, 449
EagI	CGGCCG	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	3 cut(s)	160, 418, 457
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	3 cut(s)	162, 420, 459
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	44, 147
Eco52I	CGGCCG	1 cut(s)	54
Eco53kI	GAGCTC	3 cut(s)	160, 418, 457
Eco57I	CTGAAG	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	249
EcoICRI	GAGCTC	3 cut(s)	160, 418, 457
EcoRII	CCWGG	1 cut(s)	225
EcoT38I	GRGCYC	3 cut(s)	162, 420, 459
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	257, 489, 563
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	299
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	3 cut(s)	33, 57, 497
FriOI	GRGCYC	3 cut(s)	162, 420, 459
Fsp4HI	GCNGC	3 cut(s)	33, 57, 497
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	3 cut(s)	33, 57, 497
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	6 cut(s)	35, 56, 155, 185, 395, 451
HapII	CCGG	4 cut(s)	47, 53, 274, 452
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	3 cut(s)	8, 194, 309
HpaII	CCGG	4 cut(s)	47, 53, 274, 452
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	4 cut(s)	124, 139, 151, 415
Hpy188III	TCNNGA	6 cut(s)	47, 191, 236, 274, 509, 523
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	385, 437, 529
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	109, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	502
HpyF3I	CTNAG	2 cut(s)	15, 216
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	2 cut(s)	46, 273
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	187, 532
LmnI	GCTCC	5 cut(s)	49, 266, 415, 454, 521
LweI	GCATC	2 cut(s)	28, 481
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	189, 534
MboI	GATC	2 cut(s)	187, 532
MboII	GAAGA	3 cut(s)	157, 256, 318
MhlI	GDGCHC	4 cut(s)	162, 263, 420, 459
MlyI	GAGTC	3 cut(s)	17, 203, 303
MmeI	TCCRAC	2 cut(s)	147, 393
MroI	TCCGGA	2 cut(s)	46, 273
MroNI	GCCGGC	1 cut(s)	52
MseI	TTAA	1 cut(s)	86
MspI	CCGG	4 cut(s)	47, 53, 274, 452
MspR9I	CCNGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	3 cut(s)	294, 366, 542
MwoI	GCNNNNNNNGC	1 cut(s)	502
NaeI	GCCGGC	1 cut(s)	54
NdeII	GATC	2 cut(s)	187, 532
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	389
PctI	GAATGC	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	34, 58, 498
PleI	GAGTC	3 cut(s)	16, 202, 303
PpsI	GAGTC	3 cut(s)	16, 202, 303
Psp124BI	GAGCTC	3 cut(s)	162, 420, 459
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	44, 147
PstNI	CAGNNNCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
Rsr2I	CGGWCCG	2 cut(s)	44, 147
RsrII	CGGWCCG	2 cut(s)	44, 147
SacI	GAGCTC	3 cut(s)	162, 420, 459
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	33, 57, 497
Sau3AI	GATC	2 cut(s)	187, 532
Sau96I	GGNCC	2 cut(s)	44, 147
SchI	GAGTC	3 cut(s)	17, 203, 303
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	4 cut(s)	162, 263, 420, 459
SfaNI	GCATC	2 cut(s)	28, 481
SfuI	TTCGAA	1 cut(s)	389
SinI	GGWCC	2 cut(s)	44, 147
SsiI	CCGC	7 cut(s)	5, 32, 57, 145, 292, 426, 497
SstI	GAGCTC	3 cut(s)	162, 420, 459
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	11, 383, 389, 531
TaqII	GACCGA	1 cut(s)	32
TauI	GCSGC	3 cut(s)	35, 59, 499
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	435
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	44, 147
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.