Rh7AG446100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000344
Physical Location & Seq
Forward (+)
60576082 .. 60588716
12635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG446100.1

Sequence Viewer

Length: 450 bp
ATGAAGAGCGCAGTGATAGGCCAGTCTGGGCTACAGAAAGTTCAGCTCCTGACCCTCCTCTGTTGGTGGCCTTGGTTTCTGGATGACCCAGCACAATGTTGCAGCCTTGGTGGTCCTGAAACCTGGAGAGCAAAATCCATTGCAGGAATCATAACAGAGAGAGATATTTTCGCCATGCTTCATGTGAGATGGATGACATTTCTCAAGAGCACTAACTTGAAGTCTGTGAGTTGTTCTGCAGAGATATTCTCCATACCTATGCCCATGATGATGTCAGTGTCGGATCTTGGTTTATTGGGCTTGAAGTTAAACATCTTAATGACGCCAAGTTTTGCTGCTCCTCTTGGACAGGAGGAGTGTGCACCACAACATGGCAAACCTAGAATTAAAACAGAATTATGGCGACTATCATATGTGAAGCCCAAGGGCAATTCTTTACAATCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.61

Weight (kDa)

8.9

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AclWI GGATC 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 220, 304
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw21I GWGCWC 2 cut(s) 212, 364
Alw44I GTGCAC 1 cut(s) 360
AlwI GGATC 1 cut(s) 291
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 2 cut(s) 19, 68
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 102, 335
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 364
Bbv12I GWGCWC 2 cut(s) 212, 364
BbvI GCAGC 2 cut(s) 114, 322
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 124
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 2 cut(s) 32, 237
BisI GCNGC 2 cut(s) 103, 336
BlsI GCNGC 2 cut(s) 104, 337
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 323
BsaJI CCNNGG 3 cut(s) 71, 106, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 3 cut(s) 71, 106, 423
BseGI GGATG 2 cut(s) 88, 198
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 3 cut(s) 47, 330, 368
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 2 cut(s) 114, 322
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 21, 70
BsiHKAI GWGCWC 2 cut(s) 212, 364
BslI CCNNNNNNNGG 1 cut(s) 371
BsnI GGCC 2 cut(s) 21, 70
Bsp1286I GDGCHC 2 cut(s) 212, 364
Bsp143I GATC 1 cut(s) 283
BspANI GGCC 2 cut(s) 21, 70
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 71, 106, 423
BssMI GATC 1 cut(s) 283
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 3 cut(s) 71, 106, 423
Bst2UI CCWGG 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 323
BstF5I GGATG 2 cut(s) 88, 198
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 2 cut(s) 32, 237
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 114, 322
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 2 cut(s) 21, 70
BtsCI GGATG 2 cut(s) 88, 198
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 282
CaiI CAGNNNCTG 1 cut(s) 49
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 113
CseI GACGC 1 cut(s) 331
CviAII CATG 4 cut(s) 175, 182, 265, 371
CviJI RGCY 7 cut(s) 21, 31, 46, 70, 105, 300, 421
CviKI_1 RGCY 7 cut(s) 21, 31, 46, 70, 105, 300, 421
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eco130I CCWWGG 3 cut(s) 71, 106, 423
Eco47I GGWCC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 3 cut(s) 71, 106, 423
ErhI CCWWGG 3 cut(s) 71, 106, 423
FaeI CATG 4 cut(s) 178, 185, 268, 374
FatI CATG 4 cut(s) 174, 181, 264, 370
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 103, 336
FokI GGATG 2 cut(s) 95, 205
Fsp4HI GCNGC 2 cut(s) 103, 336
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 103, 336
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 2 cut(s) 21, 70
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 4 cut(s) 178, 185, 268, 374
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 2 cut(s) 283, 445
Hpy188III TCNNGA 4 cut(s) 49, 80, 116, 205
Hpy8I GTNNAC 1 cut(s) 362
HpyCH4V TGCA 4 cut(s) 102, 143, 239, 362
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 4 cut(s) 178, 185, 268, 374
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 51, 343
Lsp1109I GCAGC 2 cut(s) 114, 322
MaeI CTAG 1 cut(s) 381
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 212, 364
MluCI AATT 3 cut(s) 384, 395, 430
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 4 cut(s) 65, 68, 346, 351
MseI TTAA 3 cut(s) 308, 317, 387
MslI CAYNNNNRTG 3 cut(s) 257, 269, 317
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
NdeI CATATG 1 cut(s) 412
NdeII GATC 1 cut(s) 283
NlaIII CATG 4 cut(s) 178, 185, 268, 374
PfeI GAWTC 1 cut(s) 147
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 2 cut(s) 104, 337
Psp6I CCWGG 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 122
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 283
RseI CAYNNNNRTG 3 cut(s) 257, 269, 317
SaqAI TTAA 3 cut(s) 308, 317, 387
SatI GCNGC 2 cut(s) 103, 336
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 2 cut(s) 212, 364
SetI ASST 4 cut(s) 48, 125, 259, 382
SfcI CTRYAG 2 cut(s) 32, 237
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 3 cut(s) 257, 269, 317
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 384, 395, 430
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 3 cut(s) 71, 106, 423
TasI AATT 3 cut(s) 384, 395, 430
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 3 cut(s) 308, 317, 387
Tru9I TTAA 3 cut(s) 308, 317, 387
TscAI CASTG 2 cut(s) 18, 282
TseI GCWGC 2 cut(s) 102, 335
TspDTI ATGAA 2 cut(s) 17, 170
TspRI CASTG 2 cut(s) 18, 282
Van91I CCANNNNNTGG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 113
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.