Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

84162575 .. 84168195

Gene Structure 5621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35277

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCTGGTAATGATAAAAAATTTGGAGCAAGTGGTGGCAATGGTCTTGAACTCGTTTCAAGATCCTCATCCTCGTGTAAGGTGGGCAGCTATTAATGCGATTGGACAGTTGTCTACTGATTTGGGCCCAGACCTGCAAGTTCAATATCATCAACGGGTGCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAAAACCCTCGTGTGCAGGATGTATCTCATGTTTTTGTTTTGCACAGAAGTTCTGGGAGATACACTTGCAACTCATTTAGACAAATGCCTCGTGTTTATATTGGGTGCATGAAGTCAGGCGAAGTTTTCTCTGAGCTGAGTCAAAAGTGGTATGAACCAGAATGGTGGAAGGTTGGTGATGAAAAATCATATTTTCGCCATGCTTCAGGTGAGATGTACGTCATTTCTCAAGCTCCTATCATCATTAGTTTCATCAAGGAACAAGCACTACCAAAAAGAATTGACGTAATTGAATTATATTTTCGCCATGCTTCATGTGAGATGTATGACATTTCTCAAGGTCTGGCCAATTTTGTTCGAATAAATAGAGATATTCTCCGTACCTATGCCCATGATGATGTCAGTGTCGGATCTTGGTTAATTGGGCTTGATGTTAAACATCTTAATGACGCCAAGTTTTGCTGCTCCTCTTGGACAGCAGGAGCCATTTGTGCTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

231

Amino Acids

26.38

Weight (kDa)

6.7

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	92 - 213	7.1e-07	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	113
AclWI	GGATC	2 cut(s)	56, 610
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	642
AfaI	GTAC	2 cut(s)	410, 574
AgsI	TTSAA	5 cut(s)	49, 59, 143, 194, 485
AluBI	AGCT	4 cut(s)	89, 173, 328, 425
AluI	AGCT	4 cut(s)	89, 173, 328, 425
AlwI	GGATC	2 cut(s)	56, 610
AoxI	GGCC	2 cut(s)	124, 537
ApaI	GGGCCC	1 cut(s)	128
ApeKI	GCWGC	4 cut(s)	86, 173, 176, 654
ApoI	RAATTY	1 cut(s)	19
AseI	ATTAAT	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	124, 125
AsuHPI	GGTGA	2 cut(s)	380, 413
AsuII	TTCGAA	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	128
BauI	CACGAG	3 cut(s)	72, 201, 282
BbvI	GCAGC	4 cut(s)	98, 160, 163, 641
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	4 cut(s)	87, 174, 177, 655
BlsI	GCNGC	4 cut(s)	88, 175, 178, 656
BmgT120I	GGNCC	2 cut(s)	124, 125
BmiI	GGNNCC	2 cut(s)	126, 676
BoxI	GACNNNNGTC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	552, 584
Bpu14I	TTCGAA	1 cut(s)	550
BpuEI	CTTGAG	2 cut(s)	405, 513
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	67, 190, 217
BseJI	GATNNNNATC	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	315, 320
BseRI	GAGGAG	1 cut(s)	649
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	98, 160, 163, 641
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	126, 539
BsiSI	CCGG	1 cut(s)	164
BsnI	GGCC	2 cut(s)	126, 539
Bsp119I	TTCGAA	1 cut(s)	550
Bsp120I	GGGCCC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	61, 602
Bsp19I	CCATGG	1 cut(s)	180
BspANI	GGCC	2 cut(s)	126, 539
BspCNI	CTCAG	2 cut(s)	316, 321
BspLI	GGNNCC	2 cut(s)	126, 676
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	56, 610
BspT104I	TTCGAA	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	61, 602
BssNI	GRCGYC	1 cut(s)	642
BssSI	CACGAG	3 cut(s)	72, 201, 282
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	3 cut(s)	72, 201, 282
Bst4CI	ACNGT	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	642
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	324, 329
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	67, 190, 217
BstKTI	GATC	2 cut(s)	64, 605
BstMBI	GATC	2 cut(s)	61, 602
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 173, 683
BstPAI	GACNNNNGTC	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	4 cut(s)	98, 160, 163, 641
BstX2I	RGATCY	2 cut(s)	61, 602
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	2 cut(s)	61, 602
BsuRI	GGCC	2 cut(s)	126, 539
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	67, 190, 217
BtsIMutI	CAGTG	1 cut(s)	601
BveI	ACCTGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	124, 125
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	409, 573
CviAII	CATG	7 cut(s)	181, 221, 301, 392, 500, 507, 584
CviJI	RGCY	8 cut(s)	89, 126, 173, 328, 425, 539, 619, 677
CviKI_1	RGCY	8 cut(s)	89, 126, 173, 328, 425, 539, 619, 677
CviQI	GTAC	2 cut(s)	409, 573
DdeI	CTNAG	2 cut(s)	324, 329
DpnI	GATC	2 cut(s)	63, 604
DpnII	GATC	2 cut(s)	61, 602
EaeI	YGGCCR	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	7 cut(s)	184, 224, 304, 395, 503, 510, 587
FatI	CATG	7 cut(s)	180, 220, 300, 391, 499, 506, 583
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	4 cut(s)	87, 174, 177, 655
FokI	GGATG	3 cut(s)	54, 197, 224
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	4 cut(s)	87, 174, 177, 655
GluI	GCNGC	4 cut(s)	87, 174, 177, 655
HaeIII	GGCC	2 cut(s)	126, 539
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	7 cut(s)	184, 224, 304, 395, 503, 510, 587
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	380, 413
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	325, 602
Hpy188III	TCNNGA	2 cut(s)	46, 59
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	2 cut(s)	411, 477
HpyCH4V	TGCA	5 cut(s)	136, 208, 235, 261, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 173, 683
HpyF3I	CTNAG	2 cut(s)	324, 329
HpySE526I	ACGT	2 cut(s)	411, 477
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	7 cut(s)	184, 224, 304, 395, 503, 510, 587
Kzo9I	GATC	2 cut(s)	61, 602
LmnI	GCTCC	4 cut(s)	25, 430, 662, 674
Lsp1109I	GCAGC	4 cut(s)	98, 160, 163, 641
MaeII	ACGT	2 cut(s)	411, 477
MalI	GATC	2 cut(s)	63, 604
MboI	GATC	2 cut(s)	61, 602
MflI	RGATCY	2 cut(s)	61, 602
MhlI	GDGCHC	1 cut(s)	128
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	6 cut(s)	19, 471, 480, 485, 541, 612
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	5 cut(s)	75, 81, 210, 291, 670
Mox20I	TGGCCA	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	4 cut(s)	93, 611, 627, 636
MslI	CAYNNNNRTG	3 cut(s)	72, 588, 636
Msp20I	TGGCCA	1 cut(s)	539
MspI	CCGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	3 cut(s)	95, 173, 683
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	61, 602
NlaIII	CATG	7 cut(s)	184, 224, 304, 395, 503, 510, 587
NlaIV	GGNNCC	2 cut(s)	126, 676
NspV	TTCGAA	1 cut(s)	550
PkrI	GCNGC	4 cut(s)	88, 175, 178, 656
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	126, 676
PspOMI	GGGCCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	124, 125
PsrI	GAACNNNNNNTAC	2 cut(s)	444, 476
PsuI	RGATCY	2 cut(s)	61, 602
RsaI	GTAC	2 cut(s)	410, 574
RsaNI	GTAC	2 cut(s)	409, 573
RseI	CAYNNNNRTG	3 cut(s)	72, 588, 636
SaqAI	TTAA	4 cut(s)	93, 611, 627, 636
SatI	GCNGC	4 cut(s)	87, 174, 177, 655
Sau3AI	GATC	2 cut(s)	61, 602
Sau96I	GGNCC	2 cut(s)	124, 125
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	550
SmiMI	CAYNNNNRTG	3 cut(s)	72, 588, 636
SmlI	CTYRAG	2 cut(s)	420, 528
SmoI	CTYRAG	2 cut(s)	420, 528
Sse9I	AATT	6 cut(s)	19, 471, 480, 485, 541, 612
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	2 cut(s)	414, 480
TaqI	TCGA	1 cut(s)	550
TasI	AATT	6 cut(s)	19, 471, 480, 485, 541, 612
Tru1I	TTAA	4 cut(s)	93, 611, 627, 636
Tru9I	TTAA	4 cut(s)	93, 611, 627, 636
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	4 cut(s)	86, 173, 176, 654
TspDTI	ATGAA	5 cut(s)	317, 360, 387, 433, 495
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	1 cut(s)	601
VspI	ATTAAT	1 cut(s)	93
XapI	RAATTY	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.